View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10161_high_4 (Length: 490)

Name: NF10161_high_4
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10161_high_4
NF10161_high_4
[»] chr2 (2 HSPs)
chr2 (13-473)||(26666321-26666779)
chr2 (426-473)||(26662083-26662130)
[»] chr6 (4 HSPs)
chr6 (181-228)||(29301079-29301126)
chr6 (181-228)||(29307741-29307788)
chr6 (143-184)||(29307934-29307975)
chr6 (143-180)||(29301274-29301311)


Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 13 - 473
Target Start/End: Complemental strand, 26666779 - 26666321
Alignment:
Q  13 agaagaaccaagcaaagtccacaaacagaagctaacctccttgtgcaaaaccagaaaacagagaatgtcaccactcttacctcatcaaccaaatacaaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26666779 agaagaaccaagcaaagtccacaaacagaagctaacctccttgtgcaaaaccagaaaacagagaatgtcaccactcttacctcatcaaccaaatacaaat 26666680  T
Q  113 ctcagagtcatccttagtcactacttctacatcatgttctgcaatggtctacttttgagcttgtgtatgaaaaacataaaaccaatattctgtcacagta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26666679 ctcagagtcatccttagtcactacttctacatcatgttctgcaatggtctacttttgagcttgtgtatgaaaaacataaaaccaatattctgtcacagta 26666580  T
Q  213 ttgtaacatatattttttaacaatattacacaatttaaacataaagacaagatgtggcagtgatacttcagatattgaaccacacttttctaatgcagag 312  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  26666579 ttgtaacatatttttttttacaatattacacaatttaaacataaagacaagatgtggcagtgatacttcacatattgaaccacacttttctaatgcatag 26666480  T
Q  313 gactaccaatctgttaactttttgagtataaacctcacaacctgatgaattatattttcaataccaaaaacttaaatgtgacagaggtaaacaacaccaa 412  Q
        |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26666479 --tcaccaatctgttaactttttgagtataaaactcacaacctgatgaattatattttcaataccaaaaacttaaatgtgacagatgtaaacaacaccaa 26666382  T
Q  413 catcagactagtgacacaaccaatagagtaaatgaattcaaagtataattgatgtcattac 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26666381 catcagactagtgacacaaccaatagagtaaatgaattcaaagtataattgatgtcattac 26666321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 426 - 473
Target Start/End: Complemental strand, 26662130 - 26662083
Alignment:
Q  426 acacaaccaatagagtaaatgaattcaaagtataattgatgtcattac 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26662130 acacaaccaatagagtaaatgaattcaaagtataattgatgtcattac 26662083  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 29301126 - 29301079
Alignment:
Q  181 gaaaaacataaaaccaatattctgtcacagtattgtaacatatatttt 228  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||    
T  29301126 gaaaaacagaaaacaaatattctgtcacagtattgtaacatatatttt 29301079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 29307788 - 29307741
Alignment:
Q  181 gaaaaacataaaaccaatattctgtcacagtattgtaacatatatttt 228  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||    
T  29307788 gaaaaacagaaaaccaatattctgtcacagcattgtaacatatatttt 29307741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 29307975 - 29307934
Alignment:
Q  143 atcatgttctgcaatggtctacttttgagcttgtgtatgaaa 184  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  29307975 atcatattctgcaatggtctacttttgagcttgtgtatgaaa 29307934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 29301311 - 29301274
Alignment:
Q  143 atcatgttctgcaatggtctacttttgagcttgtgtat 180  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  29301311 atcatattctgcaatggtctacttttgagcttgtgtat 29301274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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