View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10161_high_5 (Length: 459)
Name: NF10161_high_5
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10161_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 564698 - 564258
Alignment:
| Q |
1 |
gaaagaggcagcaccacttgagagatggcttgatgttaagaatgatctagcttctacagtaatctatttaatcagtgatgggtcatgctacatgacagga |
100 |
Q |
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| T |
564698 |
gaaagaggcagcaccacttgagagatggcttgatgttaagaatgatctagcttctacagtaatctatttaatcagtgatgggtcatgctacatgacagga |
564599 |
T |
|
| Q |
101 |
acaaccatatatgtcgatggagcacagtctataaccaggcctaggatgcgttcctttatgtgattgtttcaaaggttgtttgttcatgcatctgattaaa |
200 |
Q |
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| T |
564598 |
acaaccatatatgtcgatggagcacagtctataaccaggcctaggatgcgttcctttatgtgattgtttcaaaggttgtttgttcatgcatctgattaaa |
564499 |
T |
|
| Q |
201 |
tcttctacacacgacacagatatcacacagttaaaatttgggtttggtagcaattttttgctatgcccatccatagataggacatgatttgtcacagtta |
300 |
Q |
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| T |
564498 |
tcttctacacacgacacagatatcacacagttaaaatttgggtttggtagcaatgttttgctatgcccatccatagataggacatgatttgtcacagtta |
564399 |
T |
|
| Q |
301 |
aaattttggttttgttccaatgtttgcatgtgcctttagatatacacagtatatgttaagttgcagcttcactaaataaatttgtgggaacatataattg |
400 |
Q |
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| T |
564398 |
aaattttggttttgttccaatgtttgcctgtgcctttagatatacacggtatatgttaagttgcagcttcactaaataaatttgtgggaacatataattg |
564299 |
T |
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| Q |
401 |
tatgtaatgtaatgctctaatgaatgaaccatggtgatagg |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
564298 |
tatgtaatgtaatgctctaatgaatgaaccatggtgatagg |
564258 |
T |
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