View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10161_high_7 (Length: 372)

Name: NF10161_high_7
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10161_high_7
NF10161_high_7
[»] chr2 (24 HSPs)
chr2 (97-357)||(32310895-32311164)
chr2 (1-329)||(32813371-32813718)
chr2 (183-357)||(28222449-28222622)
chr2 (170-331)||(32792566-32792736)
chr2 (97-270)||(32799246-32799428)
chr2 (212-357)||(28213654-28213797)
chr2 (1-101)||(32310765-32310865)
chr2 (1-101)||(32786407-32786507)
chr2 (1-101)||(32799458-32799558)
chr2 (1-101)||(28213971-28214071)
chr2 (1-101)||(32306635-32306735)
chr2 (1-101)||(32792790-32792890)
chr2 (163-315)||(32563728-32563885)
chr2 (1-101)||(32563955-32564055)
chr2 (1-99)||(28222213-28222311)
chr2 (284-357)||(32790301-32790374)
chr2 (294-354)||(32799187-32799247)
chr2 (1-87)||(28177622-28177708)
chr2 (179-274)||(32785109-32785214)
chr2 (97-153)||(32306765-32306821)
chr2 (97-136)||(32563887-32563926)
chr2 (1-44)||(28161756-28161799)
chr2 (1-44)||(28171793-28171836)
chr2 (1-38)||(28158953-28158990)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 9e-89; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 97 - 357
Target Start/End: Original strand, 32310895 - 32311164
Alignment:
Q  97 atttgagggtagttttggccatgtaaagtgacaactgttacagaatttatagatttttgtggcaccgtgttaaaaaatgtttactatagtgttgcaaggc 196  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  |||||| | ||| ||||||||||||| ||||||||||||||    
T  32310895 atttgagggtagttttggccatgtaaagtgacagctgttacagaatttattgattttgatggcactgggttgaaaaatgtttactttagtgttgcaaggc 32310994  T
Q  197 tgcagtaaatataag---------gtgttatggtatgctttattaaaactttgattccaaggtattgaagtatatttttgtataagctccctattcaact 287  Q
    |||| |||||||||          ||||| || |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32310995 tgcaataaatataaacaagtcaaagtgttctgttatgttttattaaaacttggattccaaggtattgaagtatatttttgtataagctccctattcaact 32311094  T
Q  288 ctaacaattagagatccagaaatgattcctagatatgatattgcaagtcacaactgcttctgtgatggtt 357  Q
    || ||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32311095 cttacaattagagatcaataaatgattcttagatatgatattgcaagtcacaactgcttctgtgatggtt 32311164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 32813718 - 32813371
Alignment:
Q  1 gttttgactggaaatcaaggtccggttcgtctgaattgctcccatctcgtaagcccttaagtgagctggttcatatatttcattcttgtttagcaaattt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||| |||||| |||||||||| ||||||||||| |||||||| |||||| ||||||    
T  32813718 gttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatataattcattctggtttagaaaattt 32813619  T
Q  101 g----------agggtagttttggccatgtaaagtgacaactgttacagaatttatagatttttgtggcaccgtgttaaaaaatgtttactatagtgttg 190  Q
    |          | |  ||||||||||||||||| |||||| ||||||||||||||| ||||||  ||| || |||||||||| |||||||| ||||||||    
T  32813618 gttctcttcctatgcaagttttggccatgtaaaatgacaaatgttacagaatttattgattttgatggaactgtgttaaaaactgtttactttagtgttg 32813519  T
Q  191 caaggctgcagtaaatataag---------gtgttatggtatgctttattaaaactttgattccaaggtattgaagtatatttttgtataagctccctat 281  Q
    |||||||||| |||||||||          ||||| || |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32813518 caaggctgcaataaatataaacaaatcaaagtgttctgttatgttttattaaaacttggattccaaggtattgaagtatatttttgtataagctccctat 32813419  T
Q  282 tcaactctaacaattagagatccagaaatgattcctagatatgatatt 329  Q
    |||||||| ||||||||||||| | ||||||||| |||||||||||||    
T  32813418 tcaactcttacaattagagatcaataaatgattcttagatatgatatt 32813371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 183 - 357
Target Start/End: Original strand, 28222449 - 28222622
Alignment:
Q  183 tagtgttgcaaggctgcagtaaatataaggtgttatggtatgctttattaaaactttgattccaaggtattgaagtatatttttgtataagctccctatt 282  Q
    |||||||||||||||||| |||||  ||| |||| || ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28222449 tagtgttgcaaggctgcaataaatcaaag-tgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtataagctccctatt 28222547  T
Q  283 caactctaacaattagagatccagaaatgattcctagatatgatattgcaagtcacaactgcttctgtgatggtt 357  Q
    ||||||| ||||||| ||||| || ||| |||| ||||||||||| | ||||||||| |||||||||||||||||    
T  28222548 caactcttacaattatagatcaaggaatcattcttagatatgataatacaagtcacagctgcttctgtgatggtt 28222622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 170 - 331
Target Start/End: Complemental strand, 32792736 - 32792566
Alignment:
Q  170 aaaatgtttactatagtgttgcaaggctgcagtaaatataagg---------tgttatggtatgctttattaaaactttgattccaaggtattgaagtat 260  Q
    ||||||||||||||||||||||||||||||| |||||||||           |||| || |||||||||||||||||| |||||||||||||||||||||    
T  32792736 aaaatgtttactatagtgttgcaaggctgcaataaatataaacaaatcaaattgttctgttatgctttattaaaacttggattccaaggtattgaagtat 32792637  T
Q  261 atttttgtataagctccctattcaactctaacaattagagatccagaaatgattcctagatatgatattgc 331  Q
    ||||||||||||||||| |||| |||||| ||||||||||||| | ||||||||| ||||||||| |||||    
T  32792636 atttttgtataagctccgtattgaactcttacaattagagatcaataaatgattcttagatatgagattgc 32792566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 97 - 270
Target Start/End: Complemental strand, 32799428 - 32799246
Alignment:
Q  97 atttgagggtagttttggccatgtaaagtgacaactgttacagaatttatagatttttgtggcaccgtgttaaaaaatgtttactatagtgttgcaaggc 196  Q
    |||| |||||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||| || |||||| ||||||||| ||||||||||||||    
T  32799428 attttagggtagttttggccatgtaaagtgacagctattatagaatttataaatttttgtggcactgttttaaaatatgtttactctagtgttgcaaggc 32799329  T
Q  197 tgcagtaaatat---------aaggtgttatggtatgctttattaaaactttgattccaaggtattgaagtatatttttgtat 270  Q
    |||| |||||||         || ||||| |  ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  32799328 tgcaataaatatcaacaaatcaaagtgttcttttatgccttattaaaacttagattccaaggtattgaagtatatttttgtat 32799246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 212 - 357
Target Start/End: Complemental strand, 28213797 - 28213654
Alignment:
Q  212 gtgttatggtatgctttattaaaactttgattccaaggtattgaagtatatttttgtataagctccctattcaactctaacaattagagatccagaaatg 311  Q
    ||||| || ||||| ||| |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||  | |||     
T  28213797 gtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgta--agctccctattcaactcttacaattagagatcttggaata 28213700  T
Q  312 attcctagatatgatattgcaagtcacaactgcttctgtgatggtt 357  Q
    ||||   |||||||||||||||||||||||||||||||||||||||    
T  28213699 attctatgatatgatattgcaagtcacaactgcttctgtgatggtt 28213654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 32310765 - 32310865
Alignment:
Q  1 gttttgactggaaatcaaggtccggttcgtctgaattgctcccatctcgtaagcccttaagtgagctggttcatatatttcattcttgtttagcaaattt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||| |||||||||||||    
T  32310765 gttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctagtttagcaaattt 32310864  T
Q  101 g 101  Q
    |    
T  32310865 g 32310865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 32786507 - 32786407
Alignment:
Q  1 gttttgactggaaatcaaggtccggttcgtctgaattgctcccatctcgtaagcccttaagtgagctggttcatatatttcattcttgtttagcaaattt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||  ||||||||||||||||||| |||||||||||||    
T  32786507 gttttgactggaaatcaaggtcaggttcgtctgaattgctcccatcttgtaagctcttaagtgagtcggttcatatatttcattctggtttagcaaattt 32786408  T
Q  101 g 101  Q
    |    
T  32786407 g 32786407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 32799558 - 32799458
Alignment:
Q  1 gttttgactggaaatcaaggtccggttcgtctgaattgctcccatctcgtaagcccttaagtgagctggttcatatatttcattcttgtttagcaaattt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||| |||||||||||||    
T  32799558 gttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctagtttagcaaattt 32799459  T
Q  101 g 101  Q
    |    
T  32799458 g 32799458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 28214071 - 28213971
Alignment:
Q  1 gttttgactggaaatcaaggtccggttcgtctgaattgctcccatctcgtaagcccttaagtgagctggttcatatatttcattcttgtttagcaaattt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||| | |||||||| |||||| ||| |||||||||||||||||||| |||||||||||||    
T  28214071 gttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtgtcgtaagctcttaagcgagttggttcatatatttcattctggtttagcaaattt 28213972  T
Q  101 g 101  Q
    |    
T  28213971 g 28213971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 32306635 - 32306735
Alignment:
Q  1 gttttgactggaaatcaaggtccggttcgtctgaattgctcccatctcgtaagcccttaagtgagctggttcatatatttcattcttgtttagcaaattt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||| |||| | |||||||||| |||||||||||||||||||| |||||||||||||    
T  32306635 gttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtcttgtaaactcttaagtgagttggttcatatatttcattctagtttagcaaattt 32306734  T
Q  101 g 101  Q
    |    
T  32306735 g 32306735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 32792890 - 32792790
Alignment:
Q  1 gttttgactggaaatcaaggtccggttcgtctgaattgctcccatctcgtaagcccttaagtgagctggttcatatatttcattcttgtttagcaaattt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||| ||||| |||||||    
T  32792890 gttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctagtttatcaaattt 32792791  T
Q  101 g 101  Q
    |    
T  32792790 g 32792790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 32563885 - 32563728
Alignment:
Q  163 gtgttaaaaaatgtttactatagtgttgcaaggctgcagtaaatataag---------gtgttatggtatgctttattaaaactttgattccaaggtatt 253  Q
    |||||||||||||||||||    ||||||||||||||| |||||||||          ||||| || |||||||||||||||||| ||||||||||||||    
T  32563885 gtgttaaaaaatgtttact----tgttgcaaggctgcaataaatataaacaaatcaaagtgttctgttatgctttattaaaacttggattccaaggtatt 32563790  T
Q  254 gaagtatatttttgtataagctccctattcaactctaacaattagagatccagaaatgattc 315  Q
    ||||||||||||| ||||||||||||||||| |||| ||||||||| ||| | |||||||||    
T  32563789 gaagtatatttttttataagctccctattcagctcttacaattagatatcaataaatgattc 32563728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 32564055 - 32563955
Alignment:
Q  1 gttttgactggaaatcaaggtccggttcgtctgaattgctcccatctcgtaagcccttaagtgagctggttcatatatttcattcttgtttagcaaattt 100  Q
    ||||||||| |||||||||||| |||||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||| |||||| ||||||    
T  32564055 gttttgacttgaaatcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctggtttagaaaattt 32563956  T
Q  101 g 101  Q
    |    
T  32563955 g 32563955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 28222213 - 28222311
Alignment:
Q  1 gttttgactggaaatcaaggtccggttcgtctgaattgctcccatctcgtaagcccttaagtgagctggttcatatatttcattcttgtttagcaaatt 99  Q
    |||||||||||||||||||||| |||||||||||||||||||| | |||||||| |||||| ||| |||||||||||||||||||| | ||||||||||    
T  28222213 gttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtgtcgtaagctcttaagcgagttggttcatatatttcattctggcttagcaaatt 28222311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 284 - 357
Target Start/End: Complemental strand, 32790374 - 32790301
Alignment:
Q  284 aactctaacaattagagatccagaaatgattcctagatatgatattgcaagtcacaactgcttctgtgatggtt 357  Q
    |||||| ||||||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32790374 aactcttacaattagagattaataaatgattcttagatatgatattgcaagtcacaactgcttctgtgatggtt 32790301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 32799247 - 32799187
Alignment:
Q  294 attagagatccagaaatgattcctagatatgatattgcaagtcacaactgcttctgtgatg 354  Q
    |||||||||| || |||||||| ||||||||||||||||||||||||||| || |||||||    
T  32799247 attagagatcaaggaatgattcttagatatgatattgcaagtcacaactgattatgtgatg 32799187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 28177622 - 28177708
Alignment:
Q  1 gttttgactggaaatcaaggtccggttcgtctgaattgctcccatctcgtaagcccttaagtgagctggttcatatatttcattctt 87  Q
    |||||||||||||||||||||| ||||||||||||||| |||||  |  ||||  ||||| |||| ||||| |||||||| ||||||    
T  28177622 gttttgactggaaatcaaggtcaggttcgtctgaattgttcccaaattataagttcttaactgagttggttgatatatttaattctt 28177708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 32785214 - 32785109
Alignment:
Q  179 actatagtgttgcaaggctgcagtaaatat---------aaggtgttatggtatgctttattaaaactttgattccaaggtattgaagtatat-ttttgt 268  Q
    ||||||||||||||||||||||||||||||         ||  |||| || ||||| |||||||||||| ||||||||||||||||||||||| |||||     
T  32785214 actatagtgttgcaaggctgcagtaaatatcaacaaatgaaaatgttctgttatgccttattaaaacttggattccaaggtattgaagtatatcttttga 32785115  T
Q  269 ataagc 274  Q
    ||||||    
T  32785114 ataagc 32785109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 32306765 - 32306821
Alignment:
Q  97 atttgagggtagttttggccatgtaaagtgacaactgttacagaatttatagatttt 153  Q
    |||| |||||||||||||||||||||||| ||| || ||||||||||||| ||||||    
T  32306765 attttagggtagttttggccatgtaaagttacagcttttacagaatttattgatttt 32306821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 32563926 - 32563887
Alignment:
Q  97 atttgagggtagttttggccatgtaaagtgacaactgtta 136  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  32563926 atttgagggtagttttggccatgtaaagtgacagctgtta 32563887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28161756 - 28161799
Alignment:
Q  1 gttttgactggaaatcaaggtccggttcgtctgaattgctccca 44  Q
    |||||||||||||||||||||| |||| |||||||||| |||||    
T  28161756 gttttgactggaaatcaaggtcaggtttgtctgaattgttccca 28161799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28171793 - 28171836
Alignment:
Q  1 gttttgactggaaatcaaggtccggttcgtctgaattgctccca 44  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||    
T  28171793 gttttgactggaaatcaaggtcaggttcatctgaattgttccca 28171836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28158953 - 28158990
Alignment:
Q  1 gttttgactggaaatcaaggtccggttcgtctgaattg 38  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  28158953 gttttgactggaaataaaggtcaggttcgtctgaattg 28158990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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