View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10161_low_11 (Length: 382)
Name: NF10161_low_11
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10161_low_11 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 124428 - 124788
Alignment:
| Q |
18 |
atctaaataacataagaataggatcgtactgtaagtctttcatccaaaagttgatttgaattttcctagatccaggcacagtttgagtgtatcctaattc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
124428 |
atctaaataacataagaataggatcgtactgtaagtctttcatccaaaagttgatttgaattttcctagatcgaggcacagtttgagtgtatcctaattc |
124527 |
T |
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| Q |
118 |
atgaaaggctccaatgacatctatcaagcacatcacaaattcgtattaaatacaaaatgcattaaacaaaagcttaattaaaagaatgatgatttaacct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
124528 |
atgaaaggctccaatgacatctatcaagcacatcacaaattcgtattaaatacaaaatgcattaaacaaaagcttaattaaaagaatgatgatttaacct |
124627 |
T |
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| Q |
218 |
ataaggacatcgggccttagtacgcccttctttatcatatcaaattccttgaagcagaatggtggtttgggtatgtcatgtttgtcgatgctatcaatag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
124628 |
ataaggacatcgggccttagtacgcccttctttatcatatcaaattccttgaagcagaatggtggtttgggtatgtcatgtttatcgatgctatcgatag |
124727 |
T |
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| Q |
318 |
ttgttgcagcattaaacaccagcctaaacttatgattagttgctttgatgtccatctcatt |
378 |
Q |
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| T |
124728 |
ttgttgcaacattaaacaccagcctaaacttatgattagttgctttgatggtcatctcatt |
124788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 23699617 - 23699709
Alignment:
| Q |
52 |
gtctttcatccaaaagttgatttgaattttcctagatccaggcacagtttgagtgtatcctaattcatgaaaggctccaatgacatctatcaa |
144 |
Q |
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| T |
23699617 |
gtctttcatccagaagttgatttgtattttcctagatccaggtacagtttgagtgtatcctaattcatgaaatactccaatgacatctatcaa |
23699709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 23699791 - 23699885
Alignment:
| Q |
209 |
atttaacctataaggacatcgggccttagtacgcccttctttatcatatcaaattccttgaagcagaatggtggtttgggtatgtcatgtttgtc |
303 |
Q |
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| T |
23699791 |
attttacctataaggacatctggccttactattcccttcttgatctcatcaaactccttgaaactgaatgatggtctaggtatgtcatgtttgtc |
23699885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 22079326 - 22079433
Alignment:
| Q |
43 |
gtactgtaagtctttcatccaaaagttgatttgaattttcctagatccaggcacagtttgagtgtatcctaattcatgaaaggctccaatgacatctatc |
142 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22079326 |
gtactttaagtctttcatccaaaagttgatttgtattttcctagatccagcttgagtctgattgtatcctaattcatgaaaggctccaatgacatctatc |
22079425 |
T |
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| Q |
143 |
aagcacat |
150 |
Q |
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|| ||||| |
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| T |
22079426 |
aaacacat |
22079433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 363
Target Start/End: Original strand, 22079490 - 22079639
Alignment:
| Q |
214 |
acctataaggacatcgggccttagtacgcccttctttatcatatcaaattccttgaagcagaatggtggtttgggtatgtcatgtttgtcgatgctatca |
313 |
Q |
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|||||| |||||||| ||||||||| | |||||||| ||| |||||| ||||| ||| ||| | ||||||||| |||||||| ||||| ||| | ||| |
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| T |
22079490 |
acctattaggacatctggccttagtgctcccttcttgatctcatcaaagtccttaaagttgaaagatggtttgggaatgtcatgcttgtcaatgttgtca |
22079589 |
T |
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| Q |
314 |
atagttgttgcagcattaaacaccagcctaaacttatgattagttgcttt |
363 |
Q |
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| T |
22079590 |
acacttgttccaccattaaacaccaaccaaaatggatgatcagttgcttt |
22079639 |
T |
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