View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10161_low_14 (Length: 369)
Name: NF10161_low_14
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10161_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 15 - 350
Target Start/End: Original strand, 14249423 - 14249758
Alignment:
| Q |
15 |
atgaatacccaaactttcactctcaatcaggaaagtaaaagtcataaaaattcaaaacccaccaggaaaaagaaacagaagcaacaactcaactcatcac |
114 |
Q |
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| T |
14249423 |
atgaatacccaaactttcactctcaatcaggaaagtaaaagtcataaaaattcaaaacccaccaggaaaaagaaacagaagcaacaactcaactcatcac |
14249522 |
T |
|
| Q |
115 |
tcccggttcgatcttcacattccattctgttccattatgctcgcatttgcataccaatcaagcttcaatcactagttattcatcatccatatgctttcct |
214 |
Q |
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| T |
14249523 |
tcccggttcgatcttcacattccattctgttccattacgctcgcatttgcataccaatcaagcttcaatcactagttattcatcatccatatgctttcct |
14249622 |
T |
|
| Q |
215 |
tccttcaatcactaaacaaataattcaccatattctaaaaccctaatcagttttcccacctaggaaaaccctaactctaattgaacccctcaattcaagg |
314 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14249623 |
tccttcaatcactaaacaaataattcaccatcttctaaaaccctaatcagttttcccacctaggaaaaccctaactctaattgaactcctcaattcaagg |
14249722 |
T |
|
| Q |
315 |
acttcatcactcaaaaataacaataacctaacccta |
350 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
14249723 |
acttcatcactcaaaaataacaataacctaacccta |
14249758 |
T |
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