View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10161_low_15 (Length: 356)
Name: NF10161_low_15
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10161_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 26166023 - 26165685
Alignment:
| Q |
1 |
aattttgcagtgtattgtattgttgtgattaagcacgctggaaggtagattccaattgcttgtgtgagaaacatgatcaatcggttttgttgcttctgga |
100 |
Q |
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| T |
26166023 |
aattttgcagtgtattgtattgttgcgattaagcctgctggaaggcagattccaattgcttgtgtgagaaacatgatcaatcggttttgttgcttctgga |
26165924 |
T |
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| Q |
101 |
gtcttggttaattttgtgttgtacacctcattttctaaggcacaatggtgcatatgtgtacaaggtttcttatatgtatcacccatttttggctttcaat |
200 |
Q |
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| T |
26165923 |
gtctttgttaattttgtgttgtacacctcattttctaaggcacaatggtgcatatgtgtacaaggtttcttatatgtatcacccatttttggctttcaat |
26165824 |
T |
|
| Q |
201 |
caccaaatttgtctatgttctttctgtatagcaatcatttagtttaaatg-ttaggcaaatatctgagtttcactctaattaactccacacaaattgtga |
299 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
26165823 |
caccaattttgtctatgttctttctgtatagcaatcatttagtttaaatgtttaggcaaatatctgagtttcactctaattaattccacacaagttgtga |
26165724 |
T |
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| Q |
300 |
ttaaaataatttattttgattgttttctcttgcactaaa |
338 |
Q |
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| T |
26165723 |
ttaaaataatttattttgattgttttctcttgcactaaa |
26165685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 22900991 - 22901061
Alignment:
| Q |
96 |
ctggagtcttggttaattttgtgttgtacacctcattttctaaggcacaatggtgcatatgtgtacaaggt |
166 |
Q |
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| T |
22900991 |
ctggagcctttgttaattttgtgttgtacacctcattttctaaggcacaatggtgaatatgtgtacaaggt |
22901061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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