View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10161_low_16 (Length: 337)
Name: NF10161_low_16
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10161_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 32 - 321
Target Start/End: Complemental strand, 42956768 - 42956479
Alignment:
| Q |
32 |
acgttggagaagaagaataaagtcatatatgacaatgacatagtgtgtgtttaattatgcggttatnnnnnnnttattttgatttaattggttttggctt |
131 |
Q |
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| T |
42956768 |
acgttggagaagaagaataaagtcatatatgacaatgacatagtgtgtgtttaattatgcggttataaaaaaattattttgatttaattgattttggctt |
42956669 |
T |
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| Q |
132 |
acttgaagcgaagtaaaaatatgcatgtaaatgtgaatttgacgacataatcgaaatgtttaattgaccccataatatgagaaaataacggaggtgctaa |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42956668 |
acttgaagcgaagtaaaaatatgcatgtaaatgtgaatttgacgacataatcgaaatgtttaattgaccccataatatgagaaaataacggaggtgctaa |
42956569 |
T |
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| Q |
232 |
ttagtctcgcaaccaagaatttatttgttggnnnnnnnaggtaaatttatttgtttgtcaaccactagagaaaagtcaaagtgagttttt |
321 |
Q |
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||||||||||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42956568 |
ttagtctcgcacccaagaatttatttgttggttttttcagataaatttagttgtttgtcaaccactagagaaaagtcaaagtgagttttt |
42956479 |
T |
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