View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10161_low_17 (Length: 333)

Name: NF10161_low_17
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10161_low_17
NF10161_low_17
[»] chr7 (2 HSPs)
chr7 (43-173)||(35702637-35702767)
chr7 (243-316)||(35702824-35702897)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 43 - 173
Target Start/End: Original strand, 35702637 - 35702767
Alignment:
Q  43 aacgccgtcgtatcagcattatgaaccctaatcaaattacttgtagattatgctttattgtaatttgaattttgtggatttaattatgggtttgatcttg 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  35702637 aacgccgtcgtatcagcattatgaaccctaatcaaattacttgtagattatgctttattgtaatttgagttttgtggatttcattatgggtttgatcttg 35702736  T
Q  143 aacaactcatgaaagataaagtcccaaaatt 173  Q
    |||||||||||||||||||||| ||||||||    
T  35702737 aacaactcatgaaagataaagttccaaaatt 35702767  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 35702824 - 35702897
Alignment:
Q  243 gtcttagcagtaataatctgttttgaggttattacactannnnnnnatgttattttttatgttaacagtctgtg 316  Q
    ||||||||||||||||||||||||||||||||||| |||       ||||||||||| ||||||||||||||||    
T  35702824 gtcttagcagtaataatctgttttgaggttattacgctatttttttatgttatttttcatgttaacagtctgtg 35702897  T

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