View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10161_low_18 (Length: 319)

Name: NF10161_low_18
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10161_low_18
NF10161_low_18
[»] chr8 (2 HSPs)
chr8 (26-254)||(441192-441424)
chr8 (252-305)||(37011519-37011572)
[»] chr4 (3 HSPs)
chr4 (25-254)||(45781367-45781611)
chr4 (75-254)||(14565115-14565297)
chr4 (26-116)||(19599939-19600029)
[»] scaffold0005 (1 HSPs)
scaffold0005 (75-254)||(252078-252260)
[»] chr2 (1 HSPs)
chr2 (27-116)||(8040859-8040948)
[»] chr1 (1 HSPs)
chr1 (151-254)||(23629347-23629450)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 26 - 254
Target Start/End: Original strand, 441192 - 441424
Alignment:
Q  26 caaggacataatagacaaactggaatattatataatataattgtttaacaaaagtgtagaattgatttggtttaccgcaaaagcttcaaatactagagtc 125  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||||||    
T  441192 caaggacaaaatagacaaactggaatattatataatataactgtttaacaaaagtgtagaattgatttggctcaccgtaaaagcttcgaatactagagtc 441291  T
Q  126 tg---aacgtgcgattgctatccagaaacaatttacc-ttttttaaaaccaaacataaatattttgatcaaattgcatttgattgttgtaaacgtgagtt 221  Q
    ||   |||||||  ||||||||||||| ||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||| ||||||| | |||||||    
T  441292 tggtaaacgtgcagttgctatccagaagcaatttaccgttttttaaagccaaacaaaaatattttgatcaaattgcgtttgaatgttgtagatgtgagtt 441391  T
Q  222 tgaaagcacctaccgtgcaaccaaacaggcact 254  Q
    || ||||||| |||||||||||||||| |||||    
T  441392 tggaagcacccaccgtgcaaccaaacaagcact 441424  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 37011519 - 37011572
Alignment:
Q  252 actaaaataagttttggaattttatctagttggaaattcttgtagtgataatat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37011519 actaaaataagttttggaattttatctagttggaaattcttgtagtgataatat 37011572  T

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Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 25 - 254
Target Start/End: Original strand, 45781367 - 45781611
Alignment:
Q  25 gcaaggacataatagacaaactggaatattatataatata------------attgtttaacaaaagtgtagaattgatttggtttaccgcaaaagcttc 112  Q
    ||||||||||||||||||||||||||||||||||||||||            ||||||||| |||| | |||||||||||||||| ||||||||||||||    
T  45781367 gcaaggacataatagacaaactggaatattatataatatactagagtgtagaattgtttaataaaaatatagaattgatttggttcaccgcaaaagcttc 45781466  T
Q  113 aaatactagagtctg---aacgtgcgattgctatccagaaacaatttaccttttttaaaaccaaacataaatattttgatcaaattgcatttgattgttg 209  Q
    ||||  |||||||||   |||||| | ||||||| ||||||||||||||||||||| ||  ||||||||||||||||||| ||||||  |||||||||||    
T  45781467 aaatgttagagtctggtaaacgtgtggttgctattcagaaacaatttacctttttttaagtcaaacataaatattttgataaaattgtgtttgattgttg 45781566  T
Q  210 taaacgtgagtttgaaagcacctaccgtgcaaccaaacaggcact 254  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||||    
T  45781567 taaacgtgagtttggaagcacctaccgtgcaatcaaacagacact 45781611  T

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Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 75 - 254
Target Start/End: Original strand, 14565115 - 14565297
Alignment:
Q  75 aaaagtgtagaattgatttggtttaccgcaaaagcttcaaatactagagtctg---aacgtgcgattgctatccagaaacaatttaccttttttaaaacc 171  Q
    ||||||||||||||||||||| | |||| ||||||||| ||||||||||||||   |||||||  ||||||||||||| |||||||||||||||||| ||    
T  14565115 aaaagtgtagaattgatttggctcaccgtaaaagcttcgaatactagagtctggtaaacgtgcagttgctatccagaagcaatttaccttttttaaagcc 14565214  T
Q  172 aaacataaatattttgatcaaattgcatttgattgttgtaaacgtgagtttgaaagcacctaccgtgcaaccaaacaggcact 254  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||| |||||||||||||||| |||||    
T  14565215 aaacataaatattttgatcaaattgcgtttgaatgttgtagacgtgagtttggaagcacccaccgtgcaaccaaacaagcact 14565297  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 19599939 - 19600029
Alignment:
Q  26 caaggacataatagacaaactggaatattatataatataattgtttaacaaaagtgtagaattgatttggtttaccgcaaaagcttcaaat 116  Q
    ||||| |||||| ||||||| || ||||||||||| |||||||||||| ||||| |||||  ||| || | || ||||| |||||||||||    
T  19599939 caagggcataatggacaaacagggatattatataaaataattgtttaataaaagagtagatatgagttaggttgccgcagaagcttcaaat 19600029  T

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Target: scaffold0005 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 75 - 254
Target Start/End: Complemental strand, 252260 - 252078
Alignment:
Q  75 aaaagtgtagaattgatttggtttaccgcaaaagcttcaaatactagagtctg---aacgtgcgattgctatccagaaacaatttaccttttttaaaacc 171  Q
    ||||||||||||||||||||| | |||| ||||||||| ||||||||||||||   |||||||  ||||||||||||| |||||||||||||||||| ||    
T  252260 aaaagtgtagaattgatttggctcaccgtaaaagcttcgaatactagagtctggtaaacgtgcagttgctatccagaagcaatttaccttttttaaagcc 252161  T
Q  172 aaacataaatattttgatcaaattgcatttgattgttgtaaacgtgagtttgaaagcacctaccgtgcaaccaaacaggcact 254  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||| |||||||||||||||| |||||    
T  252160 aaacataaatattttgatcaaattgcgtttgaatgttgtagacgtgagtttggaagcacccaccgtgcaaccaaacaagcact 252078  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 8040948 - 8040859
Alignment:
Q  27 aaggacataatagacaaactggaatattatataatataattgtttaacaaaagtgtagaattgatttggtttaccgcaaaagcttcaaat 116  Q
    |||| ||||||  |||||| || ||||||||||| |||||||||||| ||||| |||||||||| || | || ||||| |||||||||||    
T  8040948 aagggcataatgaacaaacagggatattatataaaataattgtttaataaaagagtagaattgagtttggttgccgcataagcttcaaat 8040859  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 23629347 - 23629450
Alignment:
Q  151 caatttaccttttttaaaaccaaacataaatattttgatcaaattgcatttgattgttgtaaacgtgagtttgaaagcacctaccgtgcaaccaaacagg 250  Q
    |||||||||||||| ||| |||||||||||| || | || |||| || ||| ||||  ||||||||||||||    ||||  |||||||||||||||| |    
T  23629347 caatttacctttttgaaagccaaacataaattttattatgaaatagcttttcattgccgtaaacgtgagttttggtgcactcaccgtgcaaccaaacaag 23629446  T
Q  251 cact 254  Q
    ||||    
T  23629447 cact 23629450  T

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