View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10161_low_19 (Length: 318)
Name: NF10161_low_19
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10161_low_19 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 318
Target Start/End: Complemental strand, 28599740 - 28599433
Alignment:
| Q |
11 |
gtgagatgaagagattaatggctgagaattttcatcaaacaaataatggtttgagaaggaatagagaagaagaagaacatgaaagctgcagatctggtag |
110 |
Q |
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| T |
28599740 |
gtgatatgaagagattaatggctgagaattttcatcaaacaaataatggtttgagaaggaatagagaagaagaagaacatgaaagctgcagatctggtag |
28599641 |
T |
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| Q |
111 |
tgataacatggatggtatttctggtgatgattttgatgctgccgacaatccgccaagaaaaaagcgttatcaccgacatactcctcaacaaattcaagaa |
210 |
Q |
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| T |
28599640 |
tgataacatggatggtatttctggtgatgattttgatgctgccgacaatccgccaagaaaaaagcgttatcaccgacatactcctcaacaaattcaagaa |
28599541 |
T |
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| Q |
211 |
cttgaatcgtatgtatcataatttccttcatgaaaaaattcatcttttttatgaagtttataaaaaataattgttgggtttttgtcttttatattttgta |
310 |
Q |
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| T |
28599540 |
cttgaatcgtatgtatcataatttccttcataaaaaaaatcatcttttttatgaagtttataaaaaataattgttgggtttttgtcttttatattttgta |
28599441 |
T |
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| Q |
311 |
ggatgttt |
318 |
Q |
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| T |
28599440 |
ggatgttt |
28599433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 216
Target Start/End: Complemental strand, 12327376 - 12327260
Alignment:
| Q |
100 |
agatctggtagtgataacatggatggtatttctggtgatgattttgatgctgccgacaatccgccaagaaaaaagcgttatcaccgacatactcctcaac |
199 |
Q |
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| T |
12327376 |
agatctggtagtgataacttggatggtgtttctggtgatgaacaagatgctgatgataagcctcctaggaagaagagatatcaccgacacactcctcaac |
12327277 |
T |
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| Q |
200 |
aaattcaagaacttgaa |
216 |
Q |
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| T |
12327276 |
agattcaagagcttgaa |
12327260 |
T |
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