View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10161_low_20 (Length: 310)

Name: NF10161_low_20
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10161_low_20
NF10161_low_20
[»] chr3 (1 HSPs)
chr3 (13-310)||(42815321-42815618)


Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 42815321 - 42815618
Alignment:
Q  13 caacattttttactaaattcaaattttcagagaaaaagtttgtttacattgtctggtatcaattatgtaagatttctaaattcatggtctattgtttgtt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42815321 caacattttttactaaattcaaattttcagagaaaaagtttgtttacattgtctggtatcaattctgtaagatttctaaattcatggtctattgtttgtt 42815420  T
Q  113 cctatccctttcatcctgtaaaattacaaaaccatcgctttcggtttaaaattttgttacactttaaaagttgaaaaatatcactgatcatagtctagga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42815421 cctatccctttcatcctgtaaaattacaaaaccatcgctttcggtttaaaattttgttacactttaaaagttgaaaaatatcactgatcatagtctagga 42815520  T
Q  213 ctctaggtcagattcatgcaatcatgcttggatcaagtggttctatatttatctgaataaaaactagctaacataaattttgtacatgttaatgttat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42815521 ctctaggtcagattcatgcaatcatgcttggatcaagtggttctatatttatctgaataaaaactagctaacataaattttgtacatgttaatgttat 42815618  T

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