View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10161_low_22 (Length: 303)
Name: NF10161_low_22
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10161_low_22 |
 | |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 2018191 - 2017899
Alignment:
| Q |
11 |
gagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtggaaaaggtacaaattgcag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2018191 |
gagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtggaaaaggtacaaattgcag |
2018092 |
T |
|
| Q |
111 |
agttaatcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatgg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2018091 |
agttaatcaagtgtctcatggaaggggaagaaggtgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatgg |
2017992 |
T |
|
| Q |
211 |
atcttttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaacaagttgtatgacaatatgtattatgagatcaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2017991 |
atcttttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaacaagttgtatgacaatatgtattatgagatcaa |
2017899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 2014808 - 2014529
Alignment:
| Q |
11 |
gagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtggaaaaggtacaaattgcag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2014808 |
gagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtggaaaaggtacaaattgcag |
2014709 |
T |
|
| Q |
111 |
agttaatcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatgg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
2014708 |
agttaatcaagtgtctcatggaaggggaagaaggtgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgacgg |
2014609 |
T |
|
| Q |
211 |
atcttttacaaagacactttctcaattagcactcaagtggagaaa-tttggtatagaaaaacaagttgtatgacaatatg |
289 |
Q |
| |
|
||| ||||||||| ||||||||||||| || ||||||||||| |||||||| |||||||||||| ||||||||||| |
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|
| T |
2014608 |
gtctgctacaaagactctttctcaattagttcttaagtggagaaactttggtattgaaaaacaagtttaatgacaatatg |
2014529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 1963621 - 1963906
Alignment:
| Q |
11 |
gagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtggaaaaggtacaaattgcag |
110 |
Q |
| |
|
||||||||||| ||||| |||||| | ||||||| |||||||||||||||||||||| | |||| |||||||||||||||||| |||| ||||||| | |
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|
| T |
1963621 |
gagcagagaacaaatgcagttttgctctgtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtggaaagggtagaaattgctg |
1963720 |
T |
|
| Q |
111 |
agttaatcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatgg |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||| |||||| ||||| ||||||||| ||||| |
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|
| T |
1963721 |
agttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagtgtacataaagaagatgg |
1963820 |
T |
|
| Q |
211 |
atcttttacaaagacactttctcaattagcactcaagtggag-aaatttggtatagaaaaacaagttgtatgacaatatgtattat |
295 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1963821 |
ttctactacaaagactctttctcaattagcactcaagtggagtaactttggtatagaaaaacaagttttatgacaatatgtattat |
1963906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 2004408 - 2004148
Alignment:
| Q |
11 |
gagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtggaaaaggtacaaattgcag |
110 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| | |||||||| ||||||| |||| | |||| |
|
|
| T |
2004408 |
gagcagaaaatgaatgcggttttgttgagtgaaggactaaaagtgggattgagggcaagtgttaatgaaaatggcatagtggaaagggtagaggttgcta |
2004309 |
T |
|
| Q |
111 |
agttaatcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatgg |
210 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||| | |||| ||||||| || |||||||||||||||||||||||| | ||| ||||| ||||| |
|
|
| T |
2004308 |
aggtgatcaagtgtctcatggaaggggaagaaggtgagaaattgcgcaataacatgaaggaattaaaagaatctgcttcgaatgctgtcaaagaagatgg |
2004209 |
T |
|
| Q |
211 |
atcttttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaac |
271 |
Q |
| |
|
|||| |||||| || ||||||||||||||||||||||||||||||| || ||| ||||| |
|
|
| T |
2004208 |
ttcttctacaaacactatttctcaattagcactcaagtggagaaatttagtgtaggaaaac |
2004148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 2007788 - 2007528
Alignment:
| Q |
11 |
gagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtggaaaaggtacaaattgcag |
110 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||| ||||||| |||| | |||| |
|
|
| T |
2007788 |
gagcagaaaatgaatgcggttttgttgagtgaaggactaaaagtgggactgagggcaagtgttaatgaaaatggcatagtggaaagggtagaggttgcta |
2007689 |
T |
|
| Q |
111 |
agttaatcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatgg |
210 |
Q |
| |
|
|| | ||||||| |||||||||||| || || || | |||| | ||||| || |||||||||||||||||| ||||| | |||| ||||| ||||| |
|
|
| T |
2007688 |
aggtgatcaagtatctcatggaaggagacgagggtgagaaattacgcaataacatgaaggaattaaaagaagctgcttcaaatgcagtcaaagaagatgg |
2007589 |
T |
|
| Q |
211 |
atcttttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaac |
271 |
Q |
| |
|
|||| |||||| || |||||||| ||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
2007588 |
ttcttctacaaaaactatttctcaaatagcacttaagtggagaaatttggtgtagaaaaac |
2007528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 1969233 - 1969493
Alignment:
| Q |
11 |
gagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtggaaaaggtacaaattgcag |
110 |
Q |
| |
|
||||||| || |||||| |||||| |||||||||| |||||||||||||||||||||| | ||||| | || ||||||||||||| | | | ||| |
|
|
| T |
1969233 |
gagcagaaaatgaatgccgttttgctgagtgaaggcctaaaagtgggactgaggccaagagttaatgaaaacggcattgtggaaagagaagaggttgtta |
1969332 |
T |
|
| Q |
111 |
agttaatcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatgg |
210 |
Q |
| |
|
|| | |||||| ||||||||||||| |||||||| | ||| ||||||| || |||||||||||||||||| ||||| | |||| ||||| ||||| |
|
|
| T |
1969333 |
aggtgatcaagcgtctcatggaaggagaagaaggtgagaagttgcgcaataacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatgg |
1969432 |
T |
|
| Q |
211 |
atcttttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaac |
271 |
Q |
| |
|
|||| |||||| || |||||||| ||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
1969433 |
ttcttctacaaaaactatttctcaaatagcactcaagtggagaaatttggtgtaggaaaac |
1969493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 2011392 - 2011143
Alignment:
| Q |
22 |
gaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtggaaaaggtacaaattgcagagttaatcaag |
121 |
Q |
| |
|
|||||| |||||| ||| ||| || || ||||||||||||||||||| | |||| | ||||| ||||| |||| ||| | |||| || | |||||| |
|
|
| T |
2011392 |
gaatgcagttttggtgactgagggccttaaagtgggactgaggccaagagttaacgaaaatggtattgtcgaaagggtggaggttgctaaggtgatcaag |
2011293 |
T |
|
| Q |
122 |
tgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatggatcttttacaa |
221 |
Q |
| |
|
||||||||||||| ||||| | | |||| ||| ||| ||||||||||||||||||||| |||| || ||||| ||||| |||||||||| ||||| |
|
|
| T |
2011292 |
cgtctcatggaaggagaagagtgtgagaaattgcacaataatatgaaggaattaaaagaagttgcttctaatgcactcaaagaagatggatcttctacaa |
2011193 |
T |
|
| Q |
222 |
agacactttctcaattagcactcaagtggagaaatttggtatagaaaaac |
271 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
2011192 |
agactatttctcaattaacactcaagtggagaaatttggtgcagaaaaac |
2011143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 2437033 - 2437292
Alignment:
| Q |
11 |
gagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtggaaaaggtacaaattgcag |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | || || | |||||||||||||||| |||| | |||| |
|
|
| T |
2437033 |
gagcagagaacgaattcggttttgttgagtgagggactaaaagtgggactgaggccaagagttcatgaaaatggcattgtggaaagggtagaggttgcta |
2437132 |
T |
|
| Q |
111 |
agttaatcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatgg |
210 |
Q |
| |
|
|| | |||||||||||||||||||| |||||| ||| | | | |||||||| ||| |||||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
2437133 |
aggtgatcaagtgtctcatggaaggagaagaa----ctaaa--gtggagtaatatgaaagaactaaaagaagctgcttctaatgcactcaaagaagatgg |
2437226 |
T |
|
| Q |
211 |
atcttttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaacaagtt |
276 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||||||| ||||| || |||||||||| |
|
|
| T |
2437227 |
ttcttcgacaaagactatttctcaattaacactcaagtggagaagcttggtgcaggaaaacaagtt |
2437292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 261
Target Start/End: Original strand, 1965396 - 1965541
Alignment:
| Q |
116 |
atcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatggatctt |
215 |
Q |
| |
|
|||||||||||||||||||| ||||| | | |||| ||| ||| ||||||||||| ||||||| | |||| | ||||| ||||| |||||||||| |
|
|
| T |
1965396 |
atcaagtgtctcatggaaggagaagagtgtgagaaattgcacaataatatgaaggagttaaaaggagttgcttccaatgcactcaaagaagatggatctt |
1965495 |
T |
|
| Q |
216 |
ttacaaagacactttctcaattagcactcaagtggagaaatttggt |
261 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
1965496 |
ctacaaagactatatctcaattaacactcaagtggagaaatttggt |
1965541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 5906281 - 5906531
Alignment:
| Q |
11 |
gagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtggaaaaggtacaaattgcag |
110 |
Q |
| |
|
|||||||||| |||||| || || ||||||| || ||||| |||||| ||||||||| | ||||| | |||||||||||||||| | || | || | |
|
|
| T |
5906281 |
gagcagagaatgaatgcatttgtgctgagtgagggcctaaaggtgggagtgaggccaagagttaatgaaaatggcattgtggaaaggatagaggtttcta |
5906380 |
T |
|
| Q |
111 |
agttaatcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatgg |
210 |
Q |
| |
|
|| | ||||||||||||||||||||||||||| | | |||| ||||||| |||||||||||||| |||||| | |||| || ||||| | |||| ||||| |
|
|
| T |
5906381 |
aggtgatcaagtgtctcatggaaggggaagaatgtgagaaattgcgcaataatatgaaggaattgaaagaagcagctactaatgcacttcaagaagatgg |
5906480 |
T |
|
| Q |
211 |
atcttttacaaagacactttctcaattagcactcaagtggagaaatttggt |
261 |
Q |
| |
|
|||| || |||||| ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
5906481 |
gtcttctagaaagactgtttctcaattagcacacaagtggaaaaatttggt |
5906531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 5902797 - 5903047
Alignment:
| Q |
11 |
gagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtggaaaaggtacaaattgcag |
110 |
Q |
| |
|
||||| |||| |||||| ||| || ||||||| || || ||||||||||||||||||| ||||| | ||||||||||| |||| || ||||| | |
|
|
| T |
5902797 |
gagcaaagaatgaatgcagttgtgctgagtgagggccttaaagtgggactgaggccaagggttaatgataatggcattgttgaaagggaggaaatttcta |
5902896 |
T |
|
| Q |
111 |
agttaatcaagtgtctcatggaaggggaagaaggcgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatgg |
210 |
Q |
| |
|
| || |||||| ||||||||||||| |||||| | | ||| ||||||| ||||||||||||||||||||| || ||| || ||| | ||||| || || |
|
|
| T |
5902897 |
aattgatcaagggtctcatggaaggagaagaatgtgagaatttgcgcaataatatgaaggaattaaaagaagcttctactaatgcgctcaaagaagacgg |
5902996 |
T |
|
| Q |
211 |
atcttttacaaagacactttctcaattagcactcaagtggagaaatttggt |
261 |
Q |
| |
|
|||| || |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5902997 |
gtcttctagaaagaccatttctcaattagcactcaagtggagaaatttggt |
5903047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 5890631 - 5890603
Alignment:
| Q |
228 |
tttctcaattagcactcaagtggagaaat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5890631 |
tttctcaattagcactcaagtggagaaat |
5890603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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