View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10161_low_24 (Length: 294)
Name: NF10161_low_24
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10161_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 41 - 277
Target Start/End: Complemental strand, 49431907 - 49431665
Alignment:
| Q |
41 |
attagttttcctgctaacttataaaattctgacttcactattgaaacagaaaatatagtaacatttgaagaccattgagagtttgtcaacctcccctgcc |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49431907 |
attagttttcctgctaacttataaaattctgacttcactattgaaacagaaaatatagtaacatttgaagaccattgagagtttgtcaacctcccctgcc |
49431808 |
T |
|
| Q |
141 |
ctagtgtgctaaagttttcacagaacttc------ctacataattccaactcacccttctctaacatttattttagtgccaattatcattaccatgtagg |
234 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49431807 |
ctagtgtgctaaagttttcacagaacttcctactcctacataattccaactcacccttctctaacatttattttagtgccaattatcactaccatgtagg |
49431708 |
T |
|
| Q |
235 |
cattatgttatgccaaaatttagtaaaagaagaaaggtcaagt |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49431707 |
cattatgttatgccaaaatttagtaaaagaagaaaggccaagt |
49431665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 49422800 - 49422743
Alignment:
| Q |
190 |
cttctctaacatttattttagtgccaattatcattaccatgtaggcattatgttatgc |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49422800 |
cttctctaacatttattttagtgccaattatcactaccatgtaggcattatgttatgc |
49422743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University