View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10161_low_26 (Length: 285)

Name: NF10161_low_26
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10161_low_26
NF10161_low_26
[»] chr2 (7 HSPs)
chr2 (6-267)||(38259479-38259739)
chr2 (166-267)||(38239362-38239464)
chr2 (57-142)||(22878167-22878252)
chr2 (47-139)||(43529777-43529869)
chr2 (23-137)||(28803451-28803565)
chr2 (47-140)||(41905834-41905927)
chr2 (45-145)||(15120240-15120340)
[»] chr3 (3 HSPs)
chr3 (62-140)||(48286728-48286806)
chr3 (57-139)||(49845459-49845541)
chr3 (47-139)||(45541630-45541722)
[»] chr1 (4 HSPs)
chr1 (57-147)||(5157141-5157231)
chr1 (52-139)||(23373232-23373319)
chr1 (79-139)||(12564418-12564478)
chr1 (47-139)||(33723301-33723393)
[»] chr7 (5 HSPs)
chr7 (52-139)||(22387815-22387902)
chr7 (57-139)||(30535632-30535714)
chr7 (57-132)||(2825162-2825237)
chr7 (52-126)||(48157052-48157126)
chr7 (47-104)||(36537967-36538024)
[»] chr6 (4 HSPs)
chr6 (69-139)||(13908321-13908391)
chr6 (52-104)||(32917261-32917313)
chr6 (47-104)||(27595521-27595578)
chr6 (58-139)||(28088142-28088223)
[»] chr8 (2 HSPs)
chr8 (52-137)||(39551130-39551215)
chr8 (52-93)||(29699337-29699378)
[»] chr4 (2 HSPs)
chr4 (57-125)||(18628486-18628554)
chr4 (52-131)||(4691912-4691991)
[»] chr5 (1 HSPs)
chr5 (47-139)||(34205300-34205392)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 267
Target Start/End: Complemental strand, 38259739 - 38259479
Alignment:
Q  6 ataagccataagctctcttcttaagcgatcctggagagttaatgatcatgccataagttgtttccataagttatcccaaagagtctcagaagtgtttata 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||  |||||||||||||||||||||||     
T  38259739 ataagccataagctctcttcttaagcgatcctggagagttaatgatcataccataagttgtttccataagctatttcaaagagtctcagaagtgtttatg 38259640  T
Q  106 tccgtaaataagatcaaataaatcaattcaaacatatcctaagaaagaaatagttggtgttccaaacagtcgaaacacaacaaacccaaaccacaaagta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  38259639 tccgtaaataagatcaaataaatcaattcaaacatatcctaag-atcaaatagttggtgttccaaagagtcgaaacgcaacaaacccaaaccacaaagta 38259541  T
Q  206 gatggtgttgcaaatagttaaccacacagtttggtcaaaagcaactttagtagggacaaccc 267  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  38259540 gatggtgttgcaaatagttgaccacacagtttggtcaaaagcaactttaatagggacaaccc 38259479  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 166 - 267
Target Start/End: Complemental strand, 38239464 - 38239362
Alignment:
Q  166 tccaaacagtcgaaacacaacaaacccaaa-ccacaaagtagatggtgttgcaaatagttaaccacacagtttggtcaaaagcaactttagtagggacaa 264  Q
    |||||| ||||||||| |||||| |||||| ||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||| ||||||||    
T  38239464 tccaaagagtcgaaacgcaacaagcccaaaaccacaaagtagatggtgttccaaatagctgaccacacagtttggtcaaaagcaactttagcagggacaa 38239365  T
Q  265 ccc 267  Q
    |||    
T  38239364 ccc 38239362  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 22878167 - 22878252
Alignment:
Q  57 cataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaattcaaacatat 142  Q
    ||||| ||||||||||||| | ||||||| ||||||| ||||| |||| || ||  ||||| |||||||| ||||| |||||||||    
T  22878167 cataatttgtttccataaggtctcccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatccaaacatat 22878252  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 139
Target Start/End: Complemental strand, 43529869 - 43529777
Alignment:
Q  47 atgatcatgccataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaattcaaaca 139  Q
    |||| |||| |||||| ||||| ||||| || ||||||| ||| ||||||||| ||||| |  || ||||| |||||||| ||||||||||||    
T  43529869 atgaacatggcataagctgttttcataaattctcccaaacagtgtcagaagtgcttataccaatagataagctcaaataagtcaattcaaaca 43529777  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 28803565 - 28803451
Alignment:
Q  23 ttcttaagcgatcctggagagttaatgatcatgccataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaa 122  Q
    ||||||| | ||||||||||| | |||  |||| ||||||||||||||||| ||| || |||| ||||||| | ||| ||||  | ||| ||||| ||||    
T  28803565 ttcttaaactatcctggagagcttatggacatgtcataagttgtttccatatgttctctcaaacagtctcacatgtgcttatgccggtagataagctcaa 28803466  T
Q  123 ataaatcaattcaaa 137  Q
    |||| ||||| ||||    
T  28803465 ataagtcaatccaaa 28803451  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 41905927 - 41905834
Alignment:
Q  47 atgatcatgccataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaattcaaacat 140  Q
    |||| ||||| ||||||||||| |||||| | || | |||||||||| ||||||||||     |||||||| |||||||| |||| ||||||||    
T  41905927 atgaacatgcaataagttgttttcataagctctctcgaagagtctcataagtgtttatgcaaataaataagttcaaataagtcaaatcaaacat 41905834  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 15120240 - 15120340
Alignment:
Q  45 taatgatcatgccataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaattcaaacatatcc 144  Q
    |||||| |||| ||||||||||||||||||| | ||||||| ||  ||| || |||||||    ||| ||||| |||||||| ||||| |||||| ||||    
T  15120240 taatgaacatgtcataagttgtttccataagctctcccaaacagattcacaactgtttatgctagtagataagttcaaataagtcaatccaaacagatcc 15120339  T
Q  145 t 145  Q
    |    
T  15120340 t 15120340  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 48286806 - 48286728
Alignment:
Q  62 gttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaattcaaacat 140  Q
    ||||||| |||||||| |||| || ||||||| | |||||| | |||||| ||||| ||||||||||||||||||||||    
T  48286806 gttgttttcataagttctccctaatagtctcaaaggtgtttttgtccgtagataagctcaaataaatcaattcaaacat 48286728  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 49845541 - 49845459
Alignment:
Q  57 cataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaattcaaaca 139  Q
    ||||||||||||||||||| | ||||||| ||| ||| |||| ||||||   ||| ||||| |||||||| ||||| ||||||    
T  49845541 cataagttgtttccataagctctcccaaatagtttcataagtttttatactagtatataagctcaaataagtcaatccaaaca 49845459  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 45541630 - 45541722
Alignment:
Q  47 atgatcatgccataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaattcaaaca 139  Q
    |||| |||| |||||| ||||| |||||||| | | ||| ||||| | ||||||||||| |  |||||||| |||||||| ||||| ||||||    
T  45541630 atgaacatgtcataagctgttttcataagttcttctaaacagtcttacaagtgtttataccattaaataagctcaaataagtcaatccaaaca 45541722  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 5157141 - 5157231
Alignment:
Q  57 cataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaattcaaacatatcctaa 147  Q
    ||||||||||||| ||||| | ||||||| ||| ||| |||||||||| |||||| ||||| |||||||| ||||| |||| | |||||||    
T  5157141 cataagttgtttctataagctctcccaaacagtttcacaagtgtttatgtccgtagataagttcaaataagtcaatccaaatagatcctaa 5157231  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 23373319 - 23373232
Alignment:
Q  52 catgccataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaattcaaaca 139  Q
    |||| ||||||||||||| ||||| | ||||||| | ||||| ||||| ||||||| ||| | ||| |||||||| ||||||||||||    
T  23373319 catgtcataagttgtttctataagctctcccaaacaatctcacaagtgcttatatcagtagacaagttcaaataagtcaattcaaaca 23373232  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 12564478 - 12564418
Alignment:
Q  79 tcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaattcaaaca 139  Q
    ||||||| |||| || ||||| ||||||| ||| ||||| |||||||| ||||||||||||    
T  12564478 tcccaaacagtcacacaagtgcttatatcagtatataagctcaaataagtcaattcaaaca 12564418  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 139
Target Start/End: Complemental strand, 33723393 - 33723301
Alignment:
Q  47 atgatcatgccataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaattcaaaca 139  Q
    |||| |||| ||| || |||||||||||||| ||||||  ||||||| ||||||||||    ||| ||||| |||||||| ||||| ||||||    
T  33723393 atgaacatgtcatgagctgtttccataagttttcccaagcagtctcacaagtgtttatggtagtagataagttcaaataagtcaatccaaaca 33723301  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 22387902 - 22387815
Alignment:
Q  52 catgccataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaattcaaaca 139  Q
    ||||||||||||||||| |||||| | ||||||| ||||||| | |||||||| || ||||||||| || | ||| ||||| ||||||    
T  22387902 catgccataagttgttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaaataagttctagtaagtcaatccaaaca 22387815  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 30535632 - 30535714
Alignment:
Q  57 cataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaattcaaaca 139  Q
    |||||||||||| |||||||| ||| ||| ||||||  |||||||||| || |||||| |  |||||||| ||||||||||||    
T  30535632 cataagttgttttcataagttctccaaaacagtctctcaagtgtttatgtcagtaaattaactcaaataagtcaattcaaaca 30535714  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 2825237 - 2825162
Alignment:
Q  57 cataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaat 132  Q
    |||||| || || |||||||| | ||||||||||||| ||||| ||||||  ||| ||||| ||||||||||||||    
T  2825237 cataagatggtttcataagttcttccaaagagtctcacaagtgcttatataagtagataagctcaaataaatcaat 2825162  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 48157126 - 48157052
Alignment:
Q  52 catgccataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataa 126  Q
    |||| ||||||||||||| ||||| | ||||||| ||||||| || || ||| ||| ||||||||| ||||||||    
T  48157126 catggcataagttgtttctataagctctcccaaacagtctcacaaatgcttaaatcagtaaataagctcaaataa 48157052  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 36537967 - 36538024
Alignment:
Q  47 atgatcatgccataagttgtttccataagttatcccaaagagtctcagaagtgtttat 104  Q
    |||| |||| ||||||||||||||||||||| || |||| | ||||| ||||||||||    
T  36537967 atgaacatgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttat 36538024  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 13908321 - 13908391
Alignment:
Q  69 ccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaattcaaaca 139  Q
    ||||||||| ||| ||||||| ||| |||||||||| || ||| ||||| |||||||| ||||||||||||    
T  13908321 ccataagttctcctaaagagtgtcacaagtgtttatgtcagtagataagttcaaataagtcaattcaaaca 13908391  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 32917261 - 32917313
Alignment:
Q  52 catgccataagttgtttccataagttatcccaaagagtctcagaagtgtttat 104  Q
    |||| ||||||||||||||||||| | ||||||| ||||||| ||||||||||    
T  32917261 catgtcataagttgtttccataagctctcccaaacagtctcacaagtgtttat 32917313  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 27595578 - 27595521
Alignment:
Q  47 atgatcatgccataagttgtttccataagttatcccaaagagtctcagaagtgtttat 104  Q
    |||| |||| |||||||||||||||||| || ||||||| ||||||| ||||| ||||    
T  27595578 atgaacatgtcataagttgtttccataaattctcccaaacagtctcataagtgcttat 27595521  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 28088223 - 28088142
Alignment:
Q  58 ataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaattcaaaca 139  Q
    ||||||||||||||||||  || |||||  |||||| ||||| |||||||  |||||||| |||||||| || || ||||||    
T  28088223 ataagttgtttccataagccattccaaactgtctcaaaagtggttatatcaataaataagctcaaataagtctatccaaaca 28088142  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 39551215 - 39551130
Alignment:
Q  52 catgccataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaattcaaa 137  Q
    |||| |||||||||||||||||| || ||||||| ||| ||| || || ||||||||||| ||||  |||||||| ||||| ||||    
T  39551215 catgtcataagttgtttccataaattctcccaaacagtttcacaaatgcttatatccgtagataatctcaaataagtcaatccaaa 39551130  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 29699337 - 29699378
Alignment:
Q  52 catgccataagttgtttccataagttatcccaaagagtctca 93  Q
    |||||||||||||||||| ||||||| ||||||| |||||||    
T  29699337 catgccataagttgtttctataagttctcccaaacagtctca 29699378  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 18628554 - 18628486
Alignment:
Q  57 cataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaata 125  Q
    |||||||||||| |||||| | ||||||| ||||||| |||||||||| || ||| ||||| |||||||    
T  18628554 cataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaata 18628486  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 4691912 - 4691991
Alignment:
Q  52 catgccataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaa 131  Q
    |||| ||||||||||||||||||||| || |||| ||||||| ||||| || |  | ||| ||||| |||||||||||||    
T  4691912 catgtcataagttgtttccataagttttctcaaatagtctcacaagtgattgtgacagtagataagctcaaataaatcaa 4691991  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 34205300 - 34205392
Alignment:
Q  47 atgatcatgccataagttgtttccataagttatcccaaagagtctcagaagtgtttatatccgtaaataagatcaaataaatcaattcaaaca 139  Q
    |||| |||| ||||||||||||||||||| | ||| ||| |||  || || || |||| || ||||||||| |||||||| ||||| ||||||    
T  34205300 atgaacatgacataagttgtttccataagctctccaaaatagttccataaatgcttatgtcagtaaataagttcaaataagtcaatccaaaca 34205392  T

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