View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10161_low_3 (Length: 618)
Name: NF10161_low_3
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10161_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 552; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 30 - 601
Target Start/End: Original strand, 40843599 - 40844170
Alignment:
| Q |
30 |
acacttttaatttgaagtttctgtactatgtagatcaatagactcttatgctcatgaatacatccttaaacacaaaccttaaggaaagccaaaggtccat |
129 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40843599 |
acacttttaatttgaagtgtctgtactatgtagatcaatagactcttatgctcatgaatacatccttaaacacaaaccttaaggaaagccaaaggtccat |
40843698 |
T |
|
| Q |
130 |
ggcttttcagaattcctgcttcttcactatcaaccaaaaatgaagttgtaggagactccttaaatgttgtctgacctgaccacttcatggcatcaaccca |
229 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40843699 |
ggcttttcagaattcctgcttcttcactatccaccaaaaatgaagttgtaggagactccttaaatgttgtctgacctgaccacttcatggcatcaaccca |
40843798 |
T |
|
| Q |
230 |
cctcgaattccctaacaaatgagaagcacatttagagttctataactaactaatttgtatcttgtttaagattggaaaaattaattgagcttaccaagcc |
329 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40843799 |
cctcgaattccctaacaaatgagaagcacatttagagttctataactaactaatttgtatcttgtttaagattggaaaaattaattgagcttaccaagcc |
40843898 |
T |
|
| Q |
330 |
aattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaagaagagtaggaatacccacttcaagatttttcatccaatcctc |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40843899 |
aattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaagaagagcaggaatacccacttcaagatttttcatccaatcctc |
40843998 |
T |
|
| Q |
430 |
cgtcaaggcagcgtgtactaagaaactgcaatattcaaatttcaagtccccaacacctaaagcttcctttactgtcttcatgttcaacaatgtctctatg |
529 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40843999 |
cgtcaaggcagcatgtactaagaaactgcaatattcaaatttcaagtccccaacacctaaagcttcctttactgtcttcatgttcaacaatgtctctatg |
40844098 |
T |
|
| Q |
530 |
tcagagaagtcctgacaatgaccgaaacctccctcacatttctttctaatgtcgtagtactgcagttggaat |
601 |
Q |
| |
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| T |
40844099 |
tcagagaagtcctgacaatgaccgaaagctccctcacatttctttctaatgtcgtagtactgcagttggaat |
40844170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 12 - 271
Target Start/End: Original strand, 40838964 - 40839222
Alignment:
| Q |
12 |
acatatgtcgaaaaccagaca--cttttaatttgaagtttctgtactatgtagatcaatagactcttatgctcatgaatacatccttaaacacaaacctt |
109 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||||||| ||||| |
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| T |
40838964 |
acatatgtcgaacaccagacaaacttttaatttgaagtgtctgtacattgtagacgaatagccgcttatgctcatgaatacatccttaaact---acctt |
40839060 |
T |
|
| Q |
110 |
aaggaaagccaaaggtccatggcttttcagaattcctgcttcttcactatcaaccaaaaatgaagttgtaggagactccttaaatgttgtctgacctgac |
209 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||||||||||| |
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| T |
40839061 |
gcggaaagccaatggtccatggcttttcagaattcctgcttcttcactatcaaccaaaaacggagttgtaggagactccttatatgctgtctgacctgac |
40839160 |
T |
|
| Q |
210 |
cacttcatggcatcaacccacctcgaattccctaacaaatgagaagcacatttagagttcta |
271 |
Q |
| |
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|||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| ||||| |
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| T |
40839161 |
cacttcatggcatcaatccaccttgaattccctaccaaatgagaagcacatttagaattcta |
40839222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 317 - 601
Target Start/End: Original strand, 40839448 - 40839726
Alignment:
| Q |
317 |
agcttaccaagccaattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaagaagagtaggaatacccacttcaagatttt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40839448 |
agcttaccaagccaattgcatattagatctttttctccggcatacacaagtaacttgattccatcctcaagaagagcaggaatacccacttcaagatttt |
40839547 |
T |
|
| Q |
417 |
tcatccaatcctccgtcaaggcagcgtgtactaagaaactgcaatattcaaatttcaagtccccaacacctaaagcttcctttactgtcttcatgttcaa |
516 |
Q |
| |
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|||||||||||| | || || | || |||| | ||||||| | |||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40839548 |
tcatccaatcctgcaacatggtattgtatactgtgctactgcaagaaacaaattccaagtccccaacacctaaagcttcctttactatcttcatgttcaa |
40839647 |
T |
|
| Q |
517 |
caatgtctctatgtcagagaagtcctgacaatgaccgaaacctccctcacatttctttctaatgtcgtagtactgcagttggaat |
601 |
Q |
| |
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| T |
40839648 |
gaacgtctctatgccggagaagtaaaaacaatg------atctccctcacatttctttctgatgtcgtagcactgcagtttgaat |
40839726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 305 - 522
Target Start/End: Original strand, 40849988 - 40850205
Alignment:
| Q |
305 |
aaaaattaattgagcttaccaagccaattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaagaagagtaggaataccca |
404 |
Q |
| |
|
||||| |||| || ||||||||||||||||||||| ||||||| |||||| || |||||||| | ||||||||||||||| ||||||| ||||||||| | |
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| T |
40849988 |
aaaaagtaatcgaacttaccaagccaattgcatatgagatcttcttctccagcatacacaagcaccttgattccatcctccagaagagcaggaataccaa |
40850087 |
T |
|
| Q |
405 |
cttcaagatttttcatccaatcctccgtcaaggcagcgtgtactaagaaactgcaatattcaaatttcaagtccccaacacctaaagcttcctttactgt |
504 |
Q |
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|||||||||||||||||||||||| | || |||| || |||| | ||||||| | |||||| ||||||||||||||||||||||||| |||||| |
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| T |
40850088 |
cttcaagatttttcatccaatcctgcaacatggcactgtatactgtgctactgcaagaaacaaattccaagtccccaacacctaaagcttcccttactga |
40850187 |
T |
|
| Q |
505 |
cttcatgttcaacaatgt |
522 |
Q |
| |
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|||||||||||| ||||| |
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| T |
40850188 |
cttcatgttcaagaatgt |
40850205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 85 - 263
Target Start/End: Original strand, 40849594 - 40849773
Alignment:
| Q |
85 |
gaatacatccttaaacacaaaccttaaggaaagccaaaggtccatggcttttcagaattcctgcttcttcactatcaaccaaaaatgaagttgtaggaga |
184 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| | |||||| |||||||||||| ||||||||||||||||||||||||| ||| || |||||||| |
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|
| T |
40849594 |
gaatacatccttcaacacaaaccttgaggaaagcaagaggtccgtggcttttcagatctcctgcttcttcactatcaaccaaatatggggtcgtaggaga |
40849693 |
T |
|
| Q |
185 |
ctccttaaatgttgtctgacctgaccacttcatggcatcaacccacctcgaattccctaac-aaatgagaagcacattta |
263 |
Q |
| |
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| |||||||| | | |||||||||||| |||||||||| |||||||| ||||||||| | ||||||||| |||||||| |
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|
| T |
40849694 |
caccttaaattctttttgacctgaccacgtcatggcatcgacccaccttgaattccctgccaaaatgagaaacacattta |
40849773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 319 - 423
Target Start/End: Original strand, 19574291 - 19574395
Alignment:
| Q |
319 |
cttaccaagccaattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaagaagagtaggaatacccacttcaagatttttc |
418 |
Q |
| |
|
|||||||||||| |||||||| ||||| | ||| || || || ||||| || | |||||||||||||||||| |||||||||| ||||||||||| || |
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|
| T |
19574291 |
cttaccaagccagttgcatatgagatcatattccccagcataaacaagcaaatcgattccatcctcaagaaggataggaataccaacttcaagattcctc |
19574390 |
T |
|
| Q |
419 |
atcca |
423 |
Q |
| |
|
||||| |
|
|
| T |
19574391 |
atcca |
19574395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 321 - 427
Target Start/End: Complemental strand, 42339020 - 42338914
Alignment:
| Q |
321 |
taccaagccaattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaagaagagtaggaatacccacttcaagatttttcat |
420 |
Q |
| |
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|||||||||| ||||| || ||||| | ||| || || || ||||| || ||||||||||||||||| || | ||||||||| ||||||||||| |||| |
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| T |
42339020 |
taccaagccagttgcagatgagatcatattccccagcataaacaagcaaattgattccatcctcaagcagggcaggaataccgacttcaagattcctcat |
42338921 |
T |
|
| Q |
421 |
ccaatcc |
427 |
Q |
| |
|
||||||| |
|
|
| T |
42338920 |
ccaatcc |
42338914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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