View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10161_low_33 (Length: 249)

Name: NF10161_low_33
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10161_low_33
NF10161_low_33
[»] chr2 (15 HSPs)
chr2 (18-239)||(32534099-32534306)
chr2 (19-239)||(32174106-32174324)
chr2 (19-195)||(32147545-32147719)
chr2 (19-195)||(32156374-32156548)
chr2 (19-161)||(32212171-32212311)
chr2 (19-185)||(32118463-32118628)
chr2 (19-133)||(32182298-32182410)
chr2 (19-187)||(32152314-32152475)
chr2 (95-239)||(32182135-32182279)
chr2 (19-129)||(32157550-32157658)
chr2 (19-133)||(32153370-32153482)
chr2 (19-144)||(2821292-2821414)
chr2 (19-147)||(32207096-32207222)
chr2 (97-217)||(2821410-2821529)
chr2 (19-105)||(32110280-32110364)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 32534306 - 32534099
Alignment:
Q  18 atgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagag 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||            |||||||    
T  32534306 atgaaattgtagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctc--caagccaa------------agaagag 32534221  T
Q  118 gtaaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtactataaaacattaagctaagctaat 217  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32534220 gtaaggaatgaagaaaatatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtactataaaacattaagctaagctaat 32534121  T
Q  218 aagtaaatactctcatcctttg 239  Q
    ||||||||||||||||||||||    
T  32534120 aagtaaatactctcatcctttg 32534099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 32174324 - 32174106
Alignment:
Q  19 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 118  Q
    ||||||||||||| ||||||| ||||||  |||||||||||||||||||||||||||||| | || ||||  ||||| |||||||||||||| |||||||    
T  32174324 tgaaattgcagaagagctaaccaaggattgtgatgctacagaatgcctacaagaccttataatattcctc--caagcaaagaaaatgatcaaggaagagg 32174227  T
Q  119 taaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtactataaaacattaagctaagctaata 218  Q
    |||  ||||||||||  || ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||    
T  32174226 taaaaaatgaagaaaacattaaagaagaaggtgaactaggtagagaaaatatataggtcatgtttggttctgtactgtaaaacattaagctaagctcata 32174127  T
Q  219 agtaaatactctcatcctttg 239  Q
    |||| | | ||||||||||||    
T  32174126 agtagacattctcatcctttg 32174106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 32147719 - 32147545
Alignment:
Q  19 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 118  Q
    ||||||||||||| || |||||||||||  ||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||| ||||||     
T  32147719 tgaaattgcagaagagttaacaaaggattgtgatgctacagaatgcctacaagaccttatcaaattcctc--caagccaagaaaatgatcaaggaagaga 32147622  T
Q  119 taaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtacta 195  Q
    ||| || |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  32147621 taaagattgaagaaaataacaaagaagaaggtgaactaggtagagaaaatatataggccatgtttggttatgtacta 32147545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 32156548 - 32156374
Alignment:
Q  19 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 118  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||  ||||||||||  || ||||||     
T  32156548 tgaaattgcagaagagcttacaaaggatgttgatgctacagaatgcctacaagaccttatcaaattc--ctccaagtaaagaaaatgaaaaaggaagaga 32156451  T
Q  119 taaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtacta 195  Q
    ||| ||| ||||||| | |||||||||||  |||| |||| || ||||||||||||||||||||||||| |||||||    
T  32156450 taaagaaggaagaaaatgtcaaagaagaatctgaactagggagtgaaaatatataggccatgtttggttatgtacta 32156374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 32212171 - 32212311
Alignment:
Q  19 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 118  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || || ||||||     
T  32212171 tgaaattgcagaagagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatcc--ctccaagccaagaaaatcatgaaggaagaga 32212268  T
Q  119 taaggaatgaagaaagtatcaaagaagaaggtgaattaggtag 161  Q
    |||  |||||||||| |||||||||||||  |||| |||||||    
T  32212269 taaaaaatgaagaaaatatcaaagaagaacatgaactaggtag 32212311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 32118628 - 32118463
Alignment:
Q  19 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 118  Q
    ||||||||| ||| ||||||| ||||||  ||||||||||||||||||||||||||||||  |||||  ||||||||||||||||||||||| ||||||     
T  32118628 tgaaattgctgaagagctaacgaaggattgtgatgctacagaatgcctacaagaccttattgaatcc--ctccaagccaagaaaatgatcaaggaagaga 32118531  T
Q  119 t-aaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttgg 185  Q
    | |  ||||||||||| |||||||||||||  |||| ||| ||||||||||||||||| |||||||||    
T  32118530 tgatagaatgaagaaaatatcaaagaagaacatgaactagatagagaaaatatataggtcatgtttgg 32118463  T

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Target: chr2; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 32182410 - 32182298
Alignment:
Q  19 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 118  Q
    |||||||| |||| ||||||||||||||  ||||||||||||||||||||||||||||||||||| |  || |||||||||||||||||||| |||||||    
T  32182410 tgaaattggagaagagctaacaaaggattgtgatgctacagaatgcctacaagaccttatcaaattc--ctgcaagccaagaaaatgatcaaggaagagg 32182313  T
Q  119 taaggaatgaagaaa 133  Q
    ||| |||||||||||    
T  32182312 taaagaatgaagaaa 32182298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 32152475 - 32152314
Alignment:
Q  19 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 118  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||     |||||| ||  |||||||||||||||||||| |||||      
T  32152475 tgaaattgcagaagagctaacaaaggattgtgatgctacagaatgcctacaagacc-----aaatccttc--caagccaagaaaatgatcaaggaagaca 32152383  T
Q  119 taaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggtt 187  Q
    | |  |||||||||| |||||||| ||||  |||| || ||||||||||||||||||| ||||||||||    
T  32152382 ttaaaaatgaagaaattatcaaaggagaacatgaactatgtagagaaaatatataggctatgtttggtt 32152314  T

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Target: chr2; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 32182279 - 32182135
Alignment:
Q  95 ccaagaaaatgatcaaagaagaggtaaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtact 194  Q
    |||||||||||||| | ||||||  || ||||||||||| ||||||||||||||||||| ||||||| |||||||||||||  |||||||||| |||||     
T  32182279 ccaagaaaatgatcgaggaagagacaaagaatgaagaaaatatcaaagaagaaggtgaactaggtagtgaaaatatataggttatgtttggttatgtacc 32182180  T
Q  195 ataaaacattaagctaagctaataagtaaatactctcatcctttg 239  Q
     |||||||||||||||| || |||||||   | ||||||||||||    
T  32182179 gtaaaacattaagctaaactcataagtagtcattctcatcctttg 32182135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 32157658 - 32157550
Alignment:
Q  19 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 118  Q
    |||||||| |||| |||| |||||||||  ||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||| ||||||     
T  32157658 tgaaattggagaagagctcacaaaggattgtgatgctacagaatgcctacaagaccttatcaaattc--ctccaagccaagaaaatgatcaaggaagaga 32157561  T
Q  119 taaggaatgaa 129  Q
    | |||||||||    
T  32157560 ttaggaatgaa 32157550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 32153482 - 32153370
Alignment:
Q  19 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 118  Q
    |||||||| |||| ||||||||||||| ||||||||| |||||||||||||| |||||||||||| |  ||||||||||||||||| |||||| | |||     
T  32153482 tgaaattgtagaagagctaacaaaggaggttgatgctgcagaatgcctacaataccttatcaaattc--ctccaagccaagaaaatcatcaaacatgaga 32153385  T
Q  119 taaggaatgaagaaa 133  Q
    ||| |||||||||||    
T  32153384 taaagaatgaagaaa 32153370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 2821292 - 2821414
Alignment:
Q  19 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 118  Q
    ||||||||||||| ||||||||||||||  |||||||||| |||||||||||||||||||||||| |  |||||||||||| ||| ||| || ||||||     
T  2821292 tgaaattgcagaagagctaacaaaggattgtgatgctacaaaatgcctacaagaccttatcaaattc--ctccaagccaag-aaacgatgaaggaagaga 2821388  T
Q  119 taaggaatgaagaaagtatcaaagaa 144  Q
    ||| |||||||||||  |||||||||    
T  2821389 taaagaatgaagaaaacatcaaagaa 2821414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 32207096 - 32207222
Alignment:
Q  19 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatgatcaaagaagagg 118  Q
    ||||||||||||| |||||||||||||   |||||| |||||||| ||| |||||||||||||||||  ||||||||||||||||||||||| |||||      
T  32207096 tgaaattgcagaagagctaacaaaggactgtgatgcaacagaatgtctagaagaccttatcaaatcc--ctccaagccaagaaaatgatcaaggaagaca 32207193  T
Q  119 taaggaatgaagaaagtatcaaagaagaa 147  Q
    | |  |||||||||| | |||||||||||    
T  32207194 ttaataatgaagaaaatgtcaaagaagaa 32207222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 217
Target Start/End: Original strand, 2821410 - 2821529
Alignment:
Q  97 aagaaaatgatcaaagaagaggtaaggaatgaagaaagtatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtactat 196  Q
    |||||||||||| | || ||| ||| ||||||||||| |||| ||||||||  |||| ||||||||||||||||||||||||||||||||| |||||||     
T  2821410 aagaaaatgatcgaggatgagataaagaatgaagaaaatatccaagaagaatctgaactaggtagagaaaatatataggccatgtttggttatgtacta- 2821508  T
Q  197 aaaacattaagctaagctaat 217  Q
     ||| | ||||||||||||||    
T  2821509 gaaataataagctaagctaat 2821529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 32110364 - 32110280
Alignment:
Q  19 tgaaattgcagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctctccaagccaagaaaatg 105  Q
    |||||||||||||  | ||||||||||||||||||||||||||||| |||||||||||||||||| |  ||||||||||||||||||    
T  32110364 tgaaattgcagaagtgttaacaaaggatgttgatgctacagaatgcttacaagaccttatcaaattc--ctccaagccaagaaaatg 32110280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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