View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10161_low_39 (Length: 240)
Name: NF10161_low_39
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10161_low_39 |
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| [»] scaffold0073 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 14511325 - 14511101
Alignment:
| Q |
1 |
acaacattatcatatctttaatcttttctgattacnnnnnnngatttgttcaaaatcactatccaaaactattgtcattccgacaaacgtttgtacttat |
100 |
Q |
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| T |
14511325 |
acaacaatatcatatctttaatctttcctgattacaaaaaa-gatttgttcaaaatcactatctaaaactattgtcattccgacaaacgtttgtacttat |
14511227 |
T |
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| Q |
101 |
tgcgagannnnnnnnnncttctttctattatgtcatgcattaatcggtcaactacttcaaaactatattggtgcatcattgatgcctcatcccaaattaa |
200 |
Q |
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| T |
14511226 |
tgcgagattttttttttcttctttctattatgtcatgcattaatcggtcaactacttcaaaactatattggtgcattattgatgcctcatcccaaattaa |
14511127 |
T |
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| Q |
201 |
taatttcgtttgacgaagtagttttt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
14511126 |
taatttcgtttgacgaagtagttttt |
14511101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 52256061 - 52256139
Alignment:
| Q |
130 |
atgtcatgcattaatcggtcaactacttcaaaactatattggtgcatcattgatgcctcatcccaaattaataatttcg |
208 |
Q |
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| T |
52256061 |
atgtcatgcattgatcggtcaactatttcaaaataatatcggtacatcattgatgcatcatcccaaattaaaaatttcg |
52256139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 24542209 - 24542146
Alignment:
| Q |
147 |
gtcaactacttcaaaactatattggtgcatcattgatgcctcatcccaaattaataatttcgtt |
210 |
Q |
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| T |
24542209 |
gtcaactacttcaaaacaatatcggtgtatcattgatgtctcatcctaaattaataacttcgtt |
24542146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 21811123 - 21811194
Alignment:
| Q |
153 |
tacttcaaaactatattggtgcatcattgatgcctcatcccaaa-ttaataatttcgtttgacgaagtagtt |
223 |
Q |
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| T |
21811123 |
tactacaaaacaatattggtgcatcattggtacctcataccaaatttaataatatcgcttgacgaagaagtt |
21811194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 7037264 - 7037320
Alignment:
| Q |
143 |
atcggtcaactacttcaaaactatattggtgcatcattgatgcctcatcccaaatta |
199 |
Q |
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| T |
7037264 |
atcggtcaactacctcaaaacaccattggtgcatcattggagcctcaccccaaatta |
7037320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 10968467 - 10968401
Alignment:
| Q |
133 |
tcatgcattaatcggtcaactacttcaaaactatattggtgcatcattgatgcctcatcccaaatta |
199 |
Q |
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| T |
10968467 |
tcatgcattgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaatta |
10968401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 295 - 351
Alignment:
| Q |
143 |
atcggtcaactacttcaaaactatattggtgcatcattgatgcctcatcccaaatta |
199 |
Q |
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| T |
295 |
atcggtcaactacctcaaaacaccattggtgcatcattggagcctcaccccaaatta |
351 |
T |
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