View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10161_low_40 (Length: 239)

Name: NF10161_low_40
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10161_low_40
NF10161_low_40
[»] chr1 (12 HSPs)
chr1 (1-223)||(2006674-2006896)
chr1 (1-223)||(2012167-2012389)
chr1 (14-221)||(2019972-2020179)
chr1 (15-221)||(2010759-2010965)
chr1 (15-175)||(4334603-4334763)
chr1 (1-160)||(3379027-3379186)
chr1 (14-175)||(3341385-3341546)
chr1 (14-116)||(3362048-3362150)
chr1 (14-219)||(6601372-6601577)
chr1 (22-175)||(4322720-4322873)
chr1 (14-149)||(3349682-3349817)
chr1 (67-131)||(9818558-9818622)
[»] chr2 (4 HSPs)
chr2 (14-175)||(20953263-20953424)
chr2 (15-164)||(20927352-20927501)
chr2 (14-212)||(20934688-20934886)
chr2 (67-174)||(39274324-39274431)
[»] chr5 (1 HSPs)
chr5 (14-175)||(17970132-17970293)
[»] chr4 (1 HSPs)
chr4 (16-56)||(21237925-21237965)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2006896 - 2006674
Alignment:
Q  1 acaaatacataatctaattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttgagatttggtgcgtgaatgtttattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2006896 acaaatacataatctaattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttaagatttggtgcgtgaatgtttattt 2006797  T
Q  101 gggtgaaaccatcaagttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcatactgagacatgctaacatgatccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2006796 gggtgaaaccatcaagttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcatactgagacatgctaacatgatccaa 2006697  T
Q  201 atcaagactttttaagttcttca 223  Q
    |||||||||||||||||||||||    
T  2006696 atcaagactttttaagttcttca 2006674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2012389 - 2012167
Alignment:
Q  1 acaaatacataatctaattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttgagatttggtgcgtgaatgtttattt 100  Q
    |||| |||||||| |||| || ||||||| |||||||||||||||||||||||||||   ||| | | | | ||||||||||||||||||||||||||||    
T  2012389 acaattacataatttaataggtaagtgttttcaaagctaatatcctcaaatttaccaacaatacctagaccgttgagatttggtgcgtgaatgtttattt 2012290  T
Q  101 gggtgaaaccatcaagttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcatactgagacatgctaacatgatccaa 200  Q
    |||||||||| |||| ||||| |||  |||| |||||||||||||||||||||||||||||| ||||||||||||  ||||| ||  |||| | | | ||    
T  2012289 gggtgaaaccgtcaaattctgccaacatcaatttttcaagcagagggcaactagatatcaaactctcaaaagcatcttgagaaatagtaactttaactaa 2012190  T
Q  201 atcaagactttttaagttcttca 223  Q
    || ||||||||| ||||||||||    
T  2012189 ataaagacttttcaagttcttca 2012167  T

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Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 2020179 - 2019972
Alignment:
Q  14 ctaattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttgagatttggtgcgtgaatgtttatttgggtgaaaccatc 113  Q
    |||||||| |||| || ||||| ||||||||| ||||||||||   |||| | | ||||||||||||||||||||||||||||||||  |||||||||||    
T  2020179 ctaattgggaagttttttcaaacctaatatccacaaatttacctacgatagctagaaccttgagatttggtgcgtgaatgtttatttttgtgaaaccatc 2020080  T
Q  114 aagttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcatactgagacatgctaacatgatccaaatcaagacttttt 213  Q
    || |||  ||||| ||||  |||||||||||||||||| |||||||||| |||||||| |||  ||||||||  |||  |||||||| | |||||||||     
T  2020079 aaattcaatcaatatcaatctttcaagcagagggcaaccagatatcaaaatctcaaaatcatcttgagacatagtaatgtgatccaacttaagacttttc 2019980  T
Q  214 aagttctt 221  Q
    ||||||||    
T  2019979 aagttctt 2019972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 2010965 - 2010759
Alignment:
Q  15 taattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttgagatttggtgcgtgaatgtttatttgggtgaaaccatca 114  Q
    ||||| |||||||||   ||||||||||||||||||||||||| ||||| | | |  ||||||||||||||||| |||||||||||  |||||||| |||    
T  2010965 taatttgaaagtgtttataaagctaatatcctcaaatttaccagagatacctagagacttgagatttggtgcgttaatgtttatttttgtgaaaccctca 2010866  T
Q  115 agttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcatactgagacatgctaacatgatccaaatcaagacttttta 214  Q
    | |||    ||| |||| |||||||||| |||||||| | ||| |||||||||||||||||  ||||||||  |||  |||||||| ||||||||||| |    
T  2010865 aattcatcgaatatcaatttttcaagcaaagggcaaccaaataacaaattctcaaaagcatcttgagacatagtaaagtgatccaactcaagacttttca 2010766  T
Q  215 agttctt 221  Q
    |||||||    
T  2010765 agttctt 2010759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 4334603 - 4334763
Alignment:
Q  15 taattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttgagatttggtgcgtgaatgtttatttgggtgaaaccatca 114  Q
    |||||||||||||||| ||||| ||| | ||||||||| ||||  ||| || |||| ||||||||||||||| ||||| || ||||| || ||||||| |    
T  4334603 taattggaaagtgttgccaaaggtaacaacctcaaattcaccaacgatttcaaaaaacttgagatttggtgcatgaatattaatttgcgttaaaccataa 4334702  T
Q  115 agttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcat 175  Q
    | |||| ||||| |||| ||||||||||  ||||| ||||| || || || ||||||||||    
T  4334703 aattctctcaatctcaacttttcaagcaaggggcacctagagataaagttttcaaaagcat 4334763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 3379186 - 3379027
Alignment:
Q  1 acaaatacataatctaattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttgagatttggtgcgtgaatgtttattt 100  Q
    |||||||||| |  |||||||||| ||||  ||||| |||||||||||||||||||||  || |  |||||||| |||||||||||||||   || ||||    
T  3379186 acaaatacattagttaattggaaattgtttccaaagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaattt 3379087  T
Q  101 gggtgaaaccatcaagttctgtcaatgtcaaattttcaagcagagggcaactagatatca 160  Q
    | ||||||||||||| |||   ||||| ||||| |||||| |||||||| | ||||||||    
T  3379086 gtgtgaaaccatcaacttccaacaatgccaaatcttcaagtagagggcagccagatatca 3379027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 3341546 - 3341385
Alignment:
Q  14 ctaattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttgagatttggtgcgtgaatgtttatttgggtgaaaccatc 113  Q
    ||||||| ||||||| ||||||| |||||  |||||||| ||   ||||||| |||  ||||||||||||||| ||||| || || || || ||||||||    
T  3341546 ctaattgtaaagtgtcgtcaaagttaatactctcaaattcacataagatatctaaacacttgagatttggtgcatgaatattaatctgtgttaaaccatc 3341447  T
Q  114 aagttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcat 175  Q
    || |||| |||||||||| | |||||| || ||||| ||||||||||  || ||||||||||    
T  3341446 aatttctttcaatgtcaattcttcaagtagggggcagctagatatcatgttttcaaaagcat 3341385  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 3362150 - 3362048
Alignment:
Q  14 ctaattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttgagatttggtgcgtgaatgtttatttgggtgaaaccatc 113  Q
    ||||| |||||||||| |||||||||||||||||||||| ||||| |||||    |||||| ||||||||| |||| || || |||||| ||||||||||    
T  3362150 ctaatcggaaagtgttttcaaagctaatatcctcaaattcaccactgatatgagcaaccttcagatttggtccgtggatattaatttggctgaaaccatc 3362051  T
Q  114 aag 116  Q
    |||    
T  3362050 aag 3362048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 6601372 - 6601577
Alignment:
Q  14 ctaattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttgagatttggtgcgtgaatgtttatttgggtgaaaccatc 113  Q
    |||||||  ||||||| | |||||||||||||||||||||||| | ||| || |||| || ||||||||| || || || || |  | | ||||||||||    
T  6601372 ctaattgagaagtgttcttaaagctaatatcctcaaatttacccccgatgtcaaaaaactggagatttggggcatggatattaagatagttgaaaccatc 6601471  T
Q  114 -aagttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcatactgagacatgctaacatgatccaaatcaagactttt 212  Q
     ||||||  ||||||||||   |||||||| ||||||| |||||||||| || ||||||||||  ||||||| | ||||||| | || ||||||||| ||    
T  6601472 aaagttc-atcaatgtcaatcgttcaagcaaagggcaagtagatatcaagttttcaaaagcatcttgagacaaggtaacatgttgcagatcaagactctt 6601570  T
Q  213 taagttc 219  Q
     ||||||    
T  6601571 caagttc 6601577  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 175
Target Start/End: Original strand, 4322720 - 4322873
Alignment:
Q  22 aaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttgagatttggtgcgtgaatgtttatttgggtgaaaccatcaagttctg 121  Q
    ||||||||||||||| ||||| |||| |||  |||   ||| || |||| ||||||||||||||| || || || |||||||| |||||||||| |||||    
T  4322720 aaagtgttgtcaaaggtaataccctcgaatagaccttcgatttcaaaaaacttgagatttggtgcatggatattaatttgggttaaaccatcaacttctg 4322819  T
Q  122 tcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcat 175  Q
    ||||| |||  ||||||||||  |||||  | |||||||  || ||||||||||    
T  4322820 tcaatttcatcttttcaagcaaggggcatttggatatcatgttttcaaaagcat 4322873  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 3349817 - 3349682
Alignment:
Q  14 ctaattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttgagatttggtgcgtgaatgtttatttgggtgaaaccatc 113  Q
    ||||||| ||||||||||||||| |||||  |||||||| | |   ||| || |||| ||||||| ||||||| || || || || ||||| ||||||||    
T  3349817 ctaattgaaaagtgttgtcaaagttaatactctcaaattcatcttcgatttcaaaaaacttgagacttggtgcatggatattaatatgggttaaaccatc 3349718  T
Q  114 aagttctgtcaatgtcaaattttcaagcagagggca 149  Q
    || || ||||||||||||  | |||||||| |||||    
T  3349717 aatttttgtcaatgtcaatctctcaagcagggggca 3349682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 9818558 - 9818622
Alignment:
Q  67 aaaaccttgagatttggtgcgtgaatgtttatttgggtgaaaccatcaagttctgtcaatgtcaa 131  Q
    |||| ||||||||||||||| | ||| || || ||||| |||||||||| || ||||||||||||    
T  9818558 aaaaacttgagatttggtgcatcaatattaatatgggttaaaccatcaatttttgtcaatgtcaa 9818622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 20953424 - 20953263
Alignment:
Q  14 ctaattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttgagatttggtgcgtgaatgtttatttgggtgaaaccatc 113  Q
    ||||||| ||||||||||| ||| ||||| ||||| |||  |||   || ||||||| |||||||||||||||  |||| || |||||||||||||||||    
T  20953424 ctaattgaaaagtgttgtcgaagttaataccctcatattcgccatcaatttccaaaaacttgagatttggtgcacgaatattaatttgggtgaaaccatc 20953325  T
Q  114 aagttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcat 175  Q
    || |||| ||||| |||| ||||||||||||||||| | ||| ||||| || ||||||||||    
T  20953324 aacttctatcaatttcaatttttcaagcagagggcagccagagatcaagttttcaaaagcat 20953263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 20927501 - 20927352
Alignment:
Q  15 taattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttgagatttggtgcgtgaatgtttatttgggtgaaaccatca 114  Q
    |||||||||||| || |||||| ||||||||||| ||| ||||  ||| | ||||| |||||||||||||||  | || || | ||||||||| ||||||    
T  20927501 taattggaaagtattttcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 20927402  T
Q  115 agttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaatt 164  Q
    | |||||| ||| | || ||||||||||| ||||| | ||||||||||||    
T  20927401 acttctgtgaatttaaatttttcaagcagggggcagccagatatcaaatt 20927352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 20934886 - 20934688
Alignment:
Q  14 ctaattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttgagatttggtgcgtgaatgtttatttgggtgaaaccatc 113  Q
    |||||||||||||||||| |||| ||||| ||||| |||  |||  ||| ||||||| |||||||||||||||    || |  ||||||| ||| ||| |    
T  20934886 ctaattggaaagtgttgttaaagttaataccctcatattcgccatggatttccaaaaacttgagatttggtgcacagatatcaatttgggcgaagccacc 20934787  T
Q  114 aagttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcatactgagaca-tgctaacatgatccaaatcaagactttt 212  Q
    || ||| |||||| |||| ||||||||||| ||||| | ||||||||| || ||||||||||  |||| || |||| ||||||| || ||||||||||||    
T  20934786 aacttcggtcaatttcaatttttcaagcagggggcagccagatatcaagttttcaaaagcatcttgagccactgct-acatgattcagatcaagactttt 20934688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 39274431 - 39274324
Alignment:
Q  67 aaaaccttgagatttggtgcgtgaatgtttatttgggtgaaaccatcaagttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattct 166  Q
    |||| ||| ||||||||||| ||||| || | |||||| ||||||||| ||||| ||||  |||||| |||||| |||||||| |  |||||||  || |    
T  39274431 aaaaacttcagatttggtgcatgaatattaacttgggttaaaccatcaggttctatcaaactcaaatattcaagtagagggcagccggatatcatttttt 39274332  T
Q  167 caaaagca 174  Q
    ||||||||    
T  39274331 caaaagca 39274324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 17970293 - 17970132
Alignment:
Q  14 ctaattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttgagatttggtgcgtgaatgtttatttgggtgaaaccatc 113  Q
    ||||||| ||||||||||||||||| ||  ||||||||||||||  |||    |||| ||||||||||||||||||||| || |  || |||||||| |     
T  17970293 ctaattgcaaagtgttgtcaaagctgatgccctcaaatttaccattgatgcgaaaaaacttgagatttggtgcgtgaatattaaactgagtgaaaccctt 17970194  T
Q  114 aagttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcat 175  Q
    || |  ||||||| | || ||||||||| ||||||| |  |||||||| || ||||| ||||    
T  17970193 aactgatgtcaatattaatttttcaagctgagggcagccggatatcaagttttcaaaggcat 17970132  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 21237965 - 21237925
Alignment:
Q  16 aattggaaagtgttgtcaaagctaatatcctcaaatttacc 56  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  21237965 aattggaaagttttgtcaaagctaatatcgtcaaatttacc 21237925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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