View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10161_low_42 (Length: 229)

Name: NF10161_low_42
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10161_low_42
NF10161_low_42
[»] chr7 (24 HSPs)
chr7 (25-132)||(48705644-48705750)
chr7 (38-123)||(33474361-33474445)
chr7 (168-229)||(48646057-48646118)
chr7 (168-229)||(44333147-44333208)
chr7 (168-228)||(35727707-35727767)
chr7 (170-229)||(10899127-10899186)
chr7 (172-229)||(8374926-8374983)
chr7 (168-229)||(21062825-21062886)
chr7 (168-229)||(43457465-43457526)
chr7 (168-229)||(7258283-7258344)
chr7 (168-228)||(12223754-12223814)
chr7 (168-229)||(8375637-8375698)
chr7 (168-229)||(45583692-45583753)
chr7 (168-229)||(46286511-46286572)
chr7 (168-229)||(48647497-48647558)
chr7 (168-229)||(48777264-48777325)
chr7 (168-228)||(44334504-44334564)
chr7 (168-228)||(48788727-48788787)
chr7 (168-229)||(5930186-5930247)
chr7 (168-229)||(30925062-30925123)
chr7 (168-229)||(34704917-34704978)
chr7 (168-229)||(35729140-35729201)
chr7 (176-229)||(42477397-42477450)
chr7 (87-159)||(5082481-5082552)
[»] chr3 (34 HSPs)
chr3 (21-133)||(21814202-21814312)
chr3 (21-121)||(15502622-15502721)
chr3 (21-120)||(41998907-41999005)
chr3 (39-117)||(1165784-1165861)
chr3 (39-121)||(15005830-15005911)
chr3 (36-133)||(3084012-3084107)
chr3 (21-120)||(34060751-34060850)
chr3 (168-229)||(52318371-52318432)
chr3 (168-229)||(2591635-2591696)
chr3 (168-229)||(2592061-2592122)
chr3 (168-229)||(33428489-33428550)
chr3 (168-229)||(45600992-45601053)
chr3 (168-229)||(48572993-48573054)
chr3 (169-229)||(19331117-19331177)
chr3 (168-229)||(17700526-17700587)
chr3 (168-229)||(19114541-19114602)
chr3 (168-229)||(55388081-55388142)
chr3 (168-228)||(50753825-50753885)
chr3 (168-227)||(47118107-47118166)
chr3 (39-121)||(21195283-21195364)
chr3 (168-226)||(47428614-47428672)
chr3 (192-229)||(11773105-11773142)
chr3 (168-229)||(17701973-17702034)
chr3 (168-229)||(19115200-19115261)
chr3 (168-229)||(34263813-34263874)
chr3 (168-229)||(36278960-36279021)
chr3 (169-229)||(20464078-20464138)
chr3 (51-118)||(54143822-54143889)
chr3 (62-116)||(22455369-22455423)
chr3 (74-123)||(28954253-28954302)
chr3 (168-229)||(52316987-52317048)
chr3 (168-229)||(55389523-55389584)
chr3 (185-229)||(47427885-47427929)
chr3 (197-229)||(49261588-49261620)
[»] scaffold0045 (2 HSPs)
scaffold0045 (40-121)||(62583-62663)
scaffold0045 (40-121)||(69915-69995)
[»] chr8 (20 HSPs)
chr8 (39-132)||(43819551-43819643)
chr8 (41-159)||(7207194-7207310)
chr8 (21-123)||(24066973-24067074)
chr8 (21-115)||(617525-617617)
chr8 (21-115)||(623918-624010)
chr8 (21-123)||(42542994-42543095)
chr8 (168-229)||(32898499-32898560)
chr8 (168-228)||(41754006-41754066)
chr8 (21-108)||(589913-589998)
chr8 (187-229)||(41754849-41754891)
chr8 (168-229)||(35178858-35178919)
chr8 (85-131)||(12221022-12221068)
chr8 (176-229)||(28005359-28005412)
chr8 (176-229)||(28062662-28062715)
chr8 (172-229)||(35177407-35177464)
chr8 (21-121)||(27737704-27737803)
chr8 (158-222)||(59548-59614)
chr8 (82-121)||(8210174-8210213)
chr8 (74-120)||(4308834-4308880)
chr8 (168-229)||(30134574-30134635)
[»] chr1 (23 HSPs)
chr1 (39-123)||(51046645-51046728)
chr1 (52-121)||(32268033-32268102)
chr1 (41-133)||(13925101-13925191)
chr1 (38-115)||(1107386-1107462)
chr1 (172-229)||(5782426-5782483)
chr1 (176-229)||(7945608-7945661)
chr1 (168-228)||(10332994-10333054)
chr1 (21-115)||(39421026-39421126)
chr1 (168-229)||(32665824-32665885)
chr1 (85-133)||(12173173-12173221)
chr1 (171-229)||(9339657-9339715)
chr1 (85-159)||(46289632-46289705)
chr1 (53-113)||(3894800-3894861)
chr1 (168-229)||(52439487-52439548)
chr1 (180-228)||(52440614-52440662)
chr1 (174-229)||(7944169-7944224)
chr1 (21-88)||(46289579-46289645)
chr1 (187-229)||(5783163-5783205)
chr1 (75-121)||(27210749-27210795)
chr1 (58-120)||(41898878-41898940)
chr1 (168-229)||(6612427-6612488)
chr1 (168-229)||(22856688-22856749)
chr1 (168-228)||(8975167-8975227)
[»] chr6 (8 HSPs)
chr6 (21-133)||(1947417-1947528)
chr6 (21-132)||(16441775-16441885)
chr6 (52-115)||(19646027-19646090)
chr6 (168-229)||(30748007-30748068)
chr6 (168-229)||(31218963-31219024)
chr6 (168-229)||(31219214-31219275)
chr6 (52-115)||(5138503-5138565)
chr6 (21-115)||(27127493-27127586)
[»] scaffold0169 (1 HSPs)
scaffold0169 (53-121)||(9025-9093)
[»] chr4 (18 HSPs)
chr4 (38-133)||(4867772-4867866)
chr4 (38-123)||(45674164-45674248)
chr4 (168-229)||(31844730-31844791)
chr4 (168-229)||(53771103-53771164)
chr4 (66-123)||(45683989-45684046)
chr4 (168-229)||(47878538-47878599)
chr4 (157-229)||(42391942-42392016)
chr4 (157-229)||(47874559-47874633)
chr4 (168-229)||(42278057-42278118)
chr4 (168-229)||(53770341-53770402)
chr4 (172-212)||(26685488-26685528)
chr4 (170-229)||(39868932-39868991)
chr4 (21-107)||(29722067-29722152)
chr4 (85-159)||(35911151-35911224)
chr4 (187-229)||(54574452-54574494)
chr4 (168-229)||(4703271-4703332)
chr4 (40-121)||(45257608-45257688)
chr4 (168-229)||(48740074-48740135)
[»] chr2 (23 HSPs)
chr2 (52-123)||(7888572-7888643)
chr2 (39-115)||(10824259-10824334)
chr2 (168-229)||(31091581-31091642)
chr2 (168-229)||(32766293-32766354)
chr2 (168-229)||(39015013-39015074)
chr2 (21-113)||(803889-803980)
chr2 (168-229)||(24459500-24459561)
chr2 (168-229)||(40000388-40000449)
chr2 (168-229)||(2910108-2910169)
chr2 (172-228)||(31090176-31090232)
chr2 (77-123)||(445602-445648)
chr2 (171-229)||(17330284-17330342)
chr2 (168-229)||(24458068-24458129)
chr2 (39-123)||(6975837-6975919)
chr2 (157-226)||(14887555-14887626)
chr2 (191-229)||(15442025-15442063)
chr2 (74-120)||(33726405-33726451)
chr2 (75-120)||(2239607-2239652)
chr2 (168-229)||(5915046-5915107)
chr2 (168-229)||(32764946-32765007)
chr2 (168-229)||(34037727-34037788)
chr2 (181-229)||(17466882-17466930)
chr2 (168-229)||(39016433-39016496)
[»] scaffold0209 (1 HSPs)
scaffold0209 (21-115)||(29349-29441)
[»] chr5 (20 HSPs)
chr5 (168-229)||(13651174-13651234)
chr5 (168-229)||(28591168-28591229)
chr5 (168-228)||(18400198-18400258)
chr5 (168-229)||(8074459-8074520)
chr5 (168-229)||(546090-546150)
chr5 (168-229)||(9538103-9538164)
chr5 (168-229)||(21069297-21069358)
chr5 (168-229)||(40612713-40612774)
chr5 (181-229)||(19182971-19183019)
chr5 (170-229)||(9537033-9537092)
chr5 (168-227)||(14891199-14891258)
chr5 (56-123)||(28782706-28782773)
chr5 (168-229)||(4592869-4592930)
chr5 (168-229)||(16611736-16611797)
chr5 (180-229)||(25590451-25590499)
chr5 (52-108)||(10317259-10317315)
chr5 (168-229)||(2464677-2464738)
chr5 (168-205)||(24900410-24900447)
chr5 (168-228)||(2466829-2466889)
chr5 (181-229)||(8075887-8075935)
[»] scaffold0034 (1 HSPs)
scaffold0034 (168-229)||(116063-116124)
[»] scaffold0039 (2 HSPs)
scaffold0039 (172-228)||(79085-79141)
scaffold0039 (172-229)||(74367-74424)


Alignment Details
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 48705750 - 48705644
Alignment:
Q  25 gagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagta 124  Q
    ||||| |||| | |||||| ||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  48705750 gagtggccttggggcattgtttaagag-aacataaatagaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttctaaaagttaaaaagtt 48705652  T
Q  125 ataatttc 132  Q
     |||||||    
T  48705651 gtaatttc 48705644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 33474445 - 33474361
Alignment:
Q  38 gcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 123  Q
    |||||||||||||| |||| ||||||||||||||| |||||||||  |||||| |||||||||||||||||||||||| |||||||    
T  33474445 gcattggttaagag-aacaaaaatagaaataatttgttgaaaaattatgaaaagtgttgaattcaactttctaaaagtcaaaaagt 33474361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 48646057 - 48646118
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  48646057 tcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatac 48646118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 44333147 - 44333208
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||    
T  44333147 tcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatac 44333208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 35727707 - 35727767
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaata 228  Q
    |||||||  ||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  35727707 tcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaata 35727767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 10899186 - 10899127
Alignment:
Q  170 actttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||| |||||||||||||    
T  10899186 actttggtccctgactctgcacctcgctgtcacatagatccttgacccaggattaaatac 10899127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 8374926 - 8374983
Alignment:
Q  172 tttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||| |||||||||||||||||||| || ||||||||| |||||||||    
T  8374926 tttagtccctgactctgcacctcgctgtcacataggtctctgactcagaattaaatac 8374983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 21062825 - 21062886
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||||| ||||||||||||||| | || ||| ||||||||||||||||||    
T  21062825 tcactttagtccctgactttgcacctcgctgtcataaaggtccttgactcaggattaaatac 21062886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 43457465 - 43457526
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||| | |||| ||||||||| ||||| ||||||||||||||||||||||    
T  43457465 tcactttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatac 43457526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 7258283 - 7258344
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||| |||||||||| | ||||||| |||||||||| ||||| ||||||||||||||||    
T  7258283 tcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatac 7258344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 12223814 - 12223754
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaata 228  Q
    |||||||||||||||||  ||||| ||  |||||||||| |||||||||||||||||||||    
T  12223814 tcactttagtccctgacactgcacatcaatgtcacataggtccctgactcaggattaaata 12223754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 8375698 - 8375637
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||| |||||||||||||  ||||| | ||||||||||| ||||||||||| ||||||||||    
T  8375698 tcacattagtccctgacttcgcaccgcactgtcacataggtccctgactcatgattaaatac 8375637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 45583692 - 45583753
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||| | ||||  ||||| |||||||| |||||||||||| |||||||||    
T  45583692 tcactttagtccctgattctgcagttcgctatcacataggtccctgactcagaattaaatac 45583753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 46286511 - 46286572
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||||| | || |||||||| | | || ||||||||||||||||||||||    
T  46286511 tcactttagtccctgactcttcatctcgctgttagaaaggtccctgactcaggattaaatac 46286572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 48647558 - 48647497
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||| |||||| | | || |||||| |||||||| ||||||||||||||||||||||    
T  48647558 tcactttagaccctgattctacagctcgctatcacataggtccctgactcaggattaaatac 48647497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 48777264 - 48777325
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||||| |||| | |||| ||||||||||||||  ||||||||||| ||||||||||    
T  48777264 tcactttagtctctgattctgcagctcgctgtcacataagtccctgactcatgattaaatac 48777325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 44334564 - 44334504
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaata 228  Q
    |||||||||| ||||| | |||| |||||||| |||||| ||||||||||| |||||||||    
T  44334564 tcactttagttcctgattctgcagctcgctgttacataggtccctgactcatgattaaata 44334504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 48788787 - 48788727
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaata 228  Q
    |||||||  ||| ||||| |||||||||||||||||||| |||||||||||  ||||||||    
T  48788787 tcactttgatccttgactttgcacctcgctgtcacataggtccctgactcataattaaata 48788727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 5930247 - 5930186
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||||| || ||| ||||| ||||| ||||| || ||||| ||||||||||||||||    
T  5930247 tcactttagtctcttactttgcacttcgctatcacaaaggtccctaactcaggattaaatac 5930186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 30925123 - 30925062
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||| ||||||| | |||| ||| | ||||||||| ||| ||||||||||||||||||    
T  30925123 tcactttaatccctgattctgcagctcccagtcacataggtccttgactcaggattaaatac 30925062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 34704917 - 34704978
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||||| | |||| ||||||||| ||||||| ||  | |||||||||||||||||||    
T  34704917 tcactttagtctccgactctgcacctcgttgtcacaaaggcctctgactcaggattaaatac 34704978  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 35729201 - 35729140
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||| ||||||| | |||| ||||||||||||||| ||| ||||| ||||||| ||||    
T  35729201 tcactttattccctgattttgcagctcgctgtcacataggtccttgacttaggattacatac 35729140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 42477397 - 42477450
Alignment:
Q  176 gtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||| ||||| ||||||||| |||| ||||| || |||||||||||||||||||    
T  42477397 gtccttgactctgcacctcgttgtcgcataggtctctgactcaggattaaatac 42477450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 5082552 - 5082481
Alignment:
Q  87 aaaaatgttgaattcaactttctaaaagttaaaaagtaataatttccgggtgcaaaattattacttttagttt 159  Q
    |||| |||||||||||||||| ||||||| |||||||  ||||||||   ||||||| || ||||||||||||    
T  5082552 aaaagtgttgaattcaactttttaaaagtcaaaaagttgtaatttcc-aatgcaaaactactacttttagttt 5082481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 21814312 - 21814202
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 120  Q
    ||||||||||| |||| |||||||||||||  |||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||| ||||    
T  21814312 taaagagtgtc-tttgggcattggttaagat-aacataaatagaaataatttgttgaaaagtggtgaaaagtgttgaattcaattttctaaaagtcaaaa 21814215  T
Q  121 agtaataatttcc 133  Q
    ||| |||||||||    
T  21814214 agttataatttcc 21814202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 15502622 - 15502721
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 120  Q
    ||||||||||||||    ||||||||||||| |||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  15502622 taaagagtgtccttgagacattggttaagag-aacaaaaatagaaataatttgttgaaaaatggtaaaaaatgttgaattcaactttttaaaagttaaaa 15502720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 41999005 - 41998907
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 120  Q
    ||||||||| |||| |  ||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  41999005 taaagagtgcccttgggacattggttaagag-aacataaatagaaataatttgttgaaaaatggtgaaaagtgttaaattcaactttataaaagtaaaaa 41998907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 1165861 - 1165784
Alignment:
Q  39 cattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagtta 117  Q
    ||||||||| ||| |||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||    
T  1165861 cattggttatgag-aacataaatagaaataatttgttgaaaagtgatgaaaaatgttgaattcaactttctaaaagtta 1165784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 15005911 - 15005830
Alignment:
Q  39 cattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaa 121  Q
    ||||||||||||| |||||||| ||||||||||| | |||||||||| |||| |||||||||||||||| |||||||||||||    
T  15005911 cattggttaagag-aacataaacagaaataatttatggaaaaatggtaaaaagtgttgaattcaactttgtaaaagttaaaaa 15005830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 3084107 - 3084012
Alignment:
Q  36 gtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagtaataatttcc 133  Q
    |||||||||||||||| |||||||||||| ||||||| |||||||||||| |||| |||||| || |||||||||||| |||||||||  ||||||||    
T  3084107 gtgcattggttaagag-aacataaatagatataatttgttgaaaaatggtaaaaagtgttgagtttaactttctaaaa-ttaaaaagttgtaatttcc 3084012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 34060751 - 34060850
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 120  Q
    |||||||||||||| ||||||||||||||| ||  | ||||| ||||| | | ||||||||||||||||| || |||||| |||||| ||||||||||||    
T  34060751 taaagagtgtccttggtgcattggttaagaagataaaaaataaaaatattgtattgaaaaatggtgaaaagtgatgaatttaactttttaaaagttaaaa 34060850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 52318432 - 52318371
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||| ||| |||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  52318432 tcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatac 52318371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 2591635 - 2591696
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||| | |||| || |||||||||||| ||||||||||||||||||||||    
T  2591635 tcactttagtccctgattctgcagcttgctgtcacataggtccctgactcaggattaaatac 2591696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 2592122 - 2592061
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||| | | |||| ||||||||||||||| ||||||||||||||||||||||    
T  2592122 tcactttagtccctaattctgcagctcgctgtcacataggtccctgactcaggattaaatac 2592061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 33428550 - 33428489
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||| |||||||||| ||||||||| |||||||||| |||||||||||| |||||||||    
T  33428550 tcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatac 33428489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 45601053 - 45600992
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||||| ||  |||||||||||||||| ||||||| ||||||||||||||    
T  45601053 tcactttagtccctgactctgtccctcgctgtcacataggtccctgattcaggattaaatac 45600992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 48572993 - 48573054
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||| |||||||||| ||||||||| | |||||||| ||||||||||||||||||||||    
T  48572993 tcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatac 48573054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 19331117 - 19331177
Alignment:
Q  169 cactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||| || ||||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  19331117 cactttcgttcctgactctgcaccttgctgtcacataggtccctgactcaggattaaatac 19331177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 17700526 - 17700587
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||  ||||| ||||||||| |||||||||| | ||||||||||||||||||||    
T  17700526 tcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatac 17700587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 19114541 - 19114602
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||||| ||||| ||| ||||||| || ||||||||||| ||||||||||    
T  19114541 tcactttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagattaaatac 19114602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 55388081 - 55388142
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||| | |||| |||||||||| |||| || |||||||||||||||||||    
T  55388081 tcactttagtccctgattctgcagctcgctgtcatataggtctctgactcaggattaaatac 55388142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 50753825 - 50753885
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaata 228  Q
    ||||||||||||||  || |||||||||||||||||||| ||||| | |||||||||||||    
T  50753825 tcactttagtccctagctctgcacctcgctgtcacataggtccctaattcaggattaaata 50753885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 47118166 - 47118107
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaat 227  Q
    |||||||||||||||||| ||||||||| ||||| |||  |||| |||||||||||||||    
T  47118166 tcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggattaaat 47118107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 21195283 - 21195364
Alignment:
Q  39 cattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaa 121  Q
    |||||||||| ||||||| |||||||||||  || ||| ||| || |||||| || ||||||||||||| |||||||||||||    
T  21195283 cattggttaa-aggaacaaaaatagaaatatcttgttggaaagtgatgaaaagtggtgaattcaactttttaaaagttaaaaa 21195364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 47428672 - 47428614
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaa 226  Q
    |||||||| ||||||||| |||||||| ||||||||||| ||| ||||||| |||||||    
T  47428672 tcactttaatccctgactttgcacctctctgtcacataggtccgtgactcaagattaaa 47428614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 11773142 - 11773105
Alignment:
Q  192 ctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  11773142 ctcgctgtcacataggtccctgactcaggattaaatac 11773105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 17702034 - 17701973
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||||| |||| | |||| |||||||||| |||| ||||||||||| ||||||||||    
T  17702034 tcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatac 17701973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 19115261 - 19115200
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||| | ||||| ||||||||| |||||||||| ||| | ||||||||||||||||    
T  19115261 tcactttagttcgtgactctgcacctcgatgtcacataggtccttcactcaggattaaatac 19115200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 34263813 - 34263874
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||| | |||||||| ||||||||||||||||| || ||| ||| ||||||||||||||    
T  34263813 tcactttggcccctgactctgcacctcgctgtcacagaggtccttgattcaggattaaatac 34263874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 36278960 - 36279021
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||| | | || |||| |||||||||| ||||||| ||||||||||||||    
T  36278960 tcactttagtccctgattatacagctcgttgtcacataggtccctgattcaggattaaatac 36279021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 20464078 - 20464138
Alignment:
Q  169 cactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||| |||| ||||||||| ||||||| || |||||| |||| ||||||||||    
T  20464078 cactttagtccccgactctgcacctcgttgtcacaaaggtccctggctcatgattaaatac 20464138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 54143822 - 54143889
Alignment:
Q  51 ggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaa 118  Q
    |||||| |||||||||||  || ||||||| || ||||||||| | ||||||||||| ||||||||||    
T  54143822 ggaacaaaaatagaaatatcttattgaaaagtgatgaaaaatggtaaattcaactttttaaaagttaa 54143889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 22455369 - 22455423
Alignment:
Q  62 agaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagtt 116  Q
    ||||||||| | || |||| ||||||||||| || ||||||||||||||||||||    
T  22455369 agaaataatgtattaaaaagtggtgaaaaatattaaattcaactttctaaaagtt 22455423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 28954302 - 28954253
Alignment:
Q  74 ttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 123  Q
    |||| |||||||| ||| |||||||||||||| |||||||||| ||||||    
T  28954302 ttgataaatggtggaaagtgttgaattcaactgtctaaaagtttaaaagt 28954253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 52316987 - 52317048
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||||| |||| | |||| |||||||||| |||| || |||||||| ||||||||||    
T  52316987 tcactttagtctctgattctgcagctcgctgtcatataggtctctgactcatgattaaatac 52317048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 55389584 - 55389523
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||| |||||| ||| |||||||||||||||||||| ||  |||||||  |||||||||    
T  55389584 tcactttggtccctaactctgcacctcgctgtcacataggtcattgactcaaaattaaatac 55389523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 47427885 - 47427929
Alignment:
Q  185 tgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||||||||| ||| |||||||  |||||||||    
T  47427885 tgtgcacctcgctgtcacataggtccttgactcaaaattaaatac 47427929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 49261620 - 49261588
Alignment:
Q  197 tgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||| ||||||||||||||||||||||    
T  49261620 tgtcacataggtccctgactcaggattaaatac 49261588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 62583 - 62663
Alignment:
Q  40 attggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaa 121  Q
    |||||||||||  |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  62583 attggttaagat-aacataaatagaaataattttttgaaaaatggtgaaaagtgttgaattcaactttctaaaagttaaaaa 62663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 69915 - 69995
Alignment:
Q  40 attggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaa 121  Q
    |||||||||||  |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  69915 attggttaagat-aacataaatagaaataattttttgaaaaatggtgaaaagtgttgaattcaactttctaaaagttaaaaa 69995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 43819643 - 43819551
Alignment:
Q  39 cattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagtaataatttc 132  Q
    ||||||||||||| ||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||  |||||||    
T  43819643 cattggttaagag-aacatgaatagaaataatttgttgaaaaatgatgaaaaatgttgaattcaactttctaaaagtcaaaaagttgtaatttc 43819551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 7207310 - 7207194
Alignment:
Q  41 ttggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagtaataatttccgggtgca 140  Q
    ||||||||||| |||||||||| ||||||||| |||||||||| |||||| |||||||||||| |||||||||||||||||||  ||| ||||   ||||    
T  7207310 ttggttaagag-aacataaatataaataatttgttgaaaaatgatgaaaagtgttgaattcaaatttctaaaagttaaaaagttgtaa-ttcccaatgca 7207213  T
Q  141 aaattattacttttagttt 159  Q
    |||||| ||||||||||||    
T  7207212 aaattactacttttagttt 7207194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 24067074 - 24066973
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 120  Q
    |||||||||||||| | ||||| |||||||  |||||||||| ||||||||| |||  |||||||||||| ||||||||||||| |||||||||||||||    
T  24067074 taaagagtgtccttggggcatttgttaagaa-aacataaatataaataatttgttgggaaatggtgaaaagtgttgaattcaaccttctaaaagttaaaa 24066976  T
Q  121 agt 123  Q
    |||    
T  24066975 agt 24066973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 617617 - 617525
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagt 115  Q
    |||||||||||||| |  |||| |||||||| |||||||||| ||||||||| || ||||||||||| ||||||| |||||||||||||||||||    
T  617617 taaagagtgtccttggaacattcgttaagag-aacataaataaaaataatttgttaaaaaatggtgagaaatgtt-aattcaactttctaaaagt 617525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 624010 - 623918
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagt 115  Q
    |||||||||||||| |  |||| |||||||| |||||||||| ||||||||| || ||||||||||| ||||||| |||||||||||||||||||    
T  624010 taaagagtgtccttggaacattcgttaagag-aacataaataaaaataatttgttaaaaaatggtgagaaatgtt-aattcaactttctaaaagt 623918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 42543095 - 42542994
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 120  Q
    ||||||||| |||| | ||||||||||| | ||||||||||| ||| ||||| || |||||| ||||||| |||||||||||||| ||||||||| ||||    
T  42543095 taaagagtgcccttggggcattggttaa-atgaacataaataaaaacaatttgtttaaaaatagtgaaaagtgttgaattcaactctctaaaagtaaaaa 42542997  T
Q  121 agt 123  Q
    |||    
T  42542996 agt 42542994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 32898560 - 32898499
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||||| |||| ||| ||||||||||| ||||||||| ||||||||||||    
T  32898560 tcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatac 32898499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 41754006 - 41754066
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaata 228  Q
    |||||||||||||||  | ||||||| |||||||||||| |||||||||||||||||||||    
T  41754006 tcactttagtccctggttctgcaccttgctgtcacataggtccctgactcaggattaaata 41754066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 589913 - 589998
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttc 108  Q
    |||||||||||||| |  |||| |||||||| |||||||||| ||||||||| || ||||||||||| ||||||| ||||||||||||    
T  589913 taaagagtgtccttggaacattcgttaagag-aacataaataaaaataatttgttaaaaaatggtgagaaatgtt-aattcaactttc 589998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 41754891 - 41754849
Alignment:
Q  187 tgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  41754891 tgcacctcgctgtcacatagatctctgactcaggattaaatac 41754849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 35178919 - 35178858
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||| |||||||||| ||||| ||||||||| || | ||||||||||||||||||||||    
T  35178919 tcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatac 35178858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 12221068 - 12221022
Alignment:
Q  85 tgaaaaatgttgaattcaactttctaaaagttaaaaagtaataattt 131  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||    
T  12221068 tgaaaaatgttgaattcaactttttaaaagtttaaaagttataattt 12221022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 28005359 - 28005412
Alignment:
Q  176 gtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||| | ||||||| ||||||| |||||||||||||||||| ||||||    
T  28005359 gtccctgactctacacctcgttgtcacaaagatccctgactcaggatcaaatac 28005412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 28062662 - 28062715
Alignment:
Q  176 gtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||| | ||||||| ||||||| |||||||||||||||||| ||||||    
T  28062662 gtccctgactctacacctcgttgtcacaaagatccctgactcaggatcaaatac 28062715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 35177407 - 35177464
Alignment:
Q  172 tttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||| | | |||| ||||||||||||||| |||||||||| |||||||||||    
T  35177407 tttagtccctaattctgcagctcgctgtcacataggtccctgactccggattaaatac 35177464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 27737704 - 27737803
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 120  Q
    ||||||||||| || |  |||| |||||||| ||||||| |||||||||| | || ||||||  | |||| ||||||||| |||||||||||||| ||||    
T  27737704 taaagagtgtctttggaacattagttaagag-aacataattagaaataatatgttaaaaaataattaaaagtgttgaatttaactttctaaaagtcaaaa 27737802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 59548 - 59614
Alignment:
Q  158 ttgagtaaat--tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggat 222  Q
    ||||||||||  |||||||||||||||||| | |||||||||||||| |   |||||||||||||||    
T  59548 ttgagtaaatagtcactttagtccctgactttacacctcgctgtcactttagtccctgactcaggat 59614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 8210213 - 8210174
Alignment:
Q  82 tggtgaaaaatgttgaattcaactttctaaaagttaaaaa 121  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  8210213 tggtgaaaaatgatgaattcaactttttaaaagttaaaaa 8210174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 4308880 - 4308834
Alignment:
Q  74 ttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 120  Q
    |||||||||||| ||||||| |||||| |||||| ||||||||||||    
T  4308880 ttgaaaaatggtaaaaaatgatgaatttaactttataaaagttaaaa 4308834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 30134574 - 30134635
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||| | ||| ||||||||||||||||| || ||||  ||||| ||||||||||    
T  30134574 tcactttagtccttaactctgcacctcgctgtcacaaaggtcccctactcatgattaaatac 30134635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 51046645 - 51046728
Alignment:
Q  39 cattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 123  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| |||||||    
T  51046645 cattggttaagag-aacataaatagaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttttaaaagtcaaaaagt 51046728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 32268102 - 32268033
Alignment:
Q  52 gaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaa 121  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  32268102 gaacataaataaaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttctaaaagtcaaaaa 32268033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 13925191 - 13925101
Alignment:
Q  41 ttggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagtaataatttcc 133  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||| ||||||||| ||||||||| |||||||  ||||||||    
T  13925191 ttggttaagag-aacataaatagaaataatttgttgaaaaatagtgaaaagtgtt-aattcaactatctaaaagtcaaaaagttgtaatttcc 13925101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 1107386 - 1107462
Alignment:
Q  38 gcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagt 115  Q
    |||||||||||||| |||||||||| ||||||||| || | ||| |||||||| ||||||||||||||| ||||||||    
T  1107386 gcattggttaagag-aacataaataaaaataatttgttaataaacggtgaaaagtgttgaattcaacttcctaaaagt 1107462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 5782426 - 5782483
Alignment:
Q  172 tttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||| |||||||||||||||||||| || |||||||| ||||||||||    
T  5782426 tttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatac 5782483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 7945661 - 7945608
Alignment:
Q  176 gtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||| |||||||||||||||||||| | ||||||||||||||||||||    
T  7945661 gtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatac 7945608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 10332994 - 10333054
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaata 228  Q
    |||||||||||||||||| ||||||||| |||||||||| ||| ||| |||||||||||||    
T  10332994 tcactttagtccctgactttgcacctcgttgtcacataggtccttgattcaggattaaata 10333054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 39421126 - 39421026
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatgg-------tgaaaaatgttgaattcaactttctaaaa 113  Q
    |||| ||||||||| |  ||||||||||||| |||||||||||||||||||| |||||||| ||       |||||| ||||||||||||||||||||||    
T  39421126 taaacagtgtccttgggacattggttaagag-aacataaatagaaataatttgttgaaaaacggtggaaactgaaaagtgttgaattcaactttctaaaa 39421028  T
Q  114 gt 115  Q
    ||    
T  39421027 gt 39421026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 32665885 - 32665824
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||| | |||| ||||||||||||||| || |||||||| ||||||||||    
T  32665885 tcactttagtccctgattctgcagctcgctgtcacataggtctctgactcatgattaaatac 32665824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 12173173 - 12173221
Alignment:
Q  85 tgaaaaatgttgaattcaactttctaaaagttaaaaagtaataatttcc 133  Q
    ||||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  12173173 tgaaaaatgttgaattcaactttgtaaaagtcaaaaagttataatttcc 12173221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 9339657 - 9339715
Alignment:
Q  171 ctttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||||||| | |||| |||| ||| |||||| ||||||||||||||||||||||    
T  9339657 ctttagtccctgattctgcagctcgttgttacataggtccctgactcaggattaaatac 9339715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 46289632 - 46289705
Alignment:
Q  85 tgaaaaatgttgaattcaactttctaaaagttaaaaagtaataatttccgggtgcaaaattattacttttagttt 159  Q
    ||||||||||||||||| ||||| |||||||||||||||  ||||||||   ||||||| || ||||||||||||    
T  46289632 tgaaaaatgttgaattcgactttttaaaagttaaaaagttgtaatttcc-aatgcaaaactactacttttagttt 46289705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 3894861 - 3894800
Alignment:
Q  53 aacataaatagaaataatttctt-gaaaaatggtgaaaaatgttgaattcaactttctaaaa 113  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||||| | |||| |||||    
T  3894861 aacataaatagaaataatttgttagaaaaatagtgaaaaatgttgaatttagctttttaaaa 3894800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 52439487 - 52439548
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||| |||||| | |||| ||||||||||||||| || ||| |||||||||||||||    
T  52439487 tcactttagcccctgattctgcagctcgctgtcacataggtctctggctcaggattaaatac 52439548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 52440662 - 52440614
Alignment:
Q  180 ctgactgtgcacctcgctgtcacatagatccctgactcaggattaaata 228  Q
    |||||| ||||| |||||||||||||| ||||||| |||||||||||||    
T  52440662 ctgactttgcacatcgctgtcacataggtccctgagtcaggattaaata 52440614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 7944169 - 7944224
Alignment:
Q  174 tagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||| | |||| ||||||||||||||| |||||||||||  |||||||||    
T  7944169 tagtccctgattttgcaactcgctgtcacataggtccctgactcaaaattaaatac 7944224  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 46289579 - 46289645
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaa 88  Q
    ||||||||||| || | ||||||||||| || || ||||||||||||||||| |||||||||| ||||    
T  46289579 taaagagtgtctttagggcattggttaaaag-aatataaatagaaataatttgttgaaaaatgttgaa 46289645  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 5783205 - 5783163
Alignment:
Q  187 tgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||||||||||||||||||  ||||||| |||||||||    
T  5783205 tgcacctcgctgtcacatagatcctcgactcagaattaaatac 5783163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 27210795 - 27210749
Alignment:
Q  75 tgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaa 121  Q
    ||||||||||||||||||| | |||| |||||| |||||||||||||    
T  27210795 tgaaaaatggtgaaaaatgatcaatttaactttttaaaagttaaaaa 27210749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 41898878 - 41898940
Alignment:
Q  58 aaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 120  Q
    ||||||||||| | | |||||||||||| |||| || |||||| |||||| ||||||||||||    
T  41898878 aaatagaaatattgtattgaaaaatggtaaaaagtgatgaatttaactttttaaaagttaaaa 41898940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 6612427 - 6612488
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||||| ||||||||||||| | | |  || |||||||| ||||||||||    
T  6612427 tcactttagtccctgactctgcacctcgctgttataaatgtctctgactcatgattaaatac 6612488  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 22856688 - 22856749
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||||| |||||| |||||| || ||| ||| |||| | ||||||||||||||||||    
T  22856688 tcactttagtcactgactctgcaccacgttgttacaaagattcttgactcaggattaaatac 22856749  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 8975167 - 8975227
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaata 228  Q
    ||||||| |||||| ||| ||||||| | ||||||| || ||||||||||| |||||||||    
T  8975167 tcactttggtccctaactttgcaccttgttgtcacaaaggtccctgactcaagattaaata 8975227  T

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Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 1947528 - 1947417
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 120  Q
    |||||||||| |||   |||||||||||||| |||||||||||||||||||| ||| |||||||| |||| |||| ||||||||||||||||||| ||||    
T  1947528 taaagagtgttcttgaggcattggttaagag-aacataaatagaaataatttgttggaaaatggtaaaaagtgttaaattcaactttctaaaagtcaaaa 1947430  T
Q  121 agtaataatttcc 133  Q
    |||  ||||||||    
T  1947429 agttgtaatttcc 1947417  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 16441775 - 16441885
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 120  Q
    |||||||||| |||||  |||||||||| || || ||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  16441775 taaagagtgttctttggacattggttaaaag-aatataaatataaataatttgttgaaaagtggtgaaaaatgttgaattcaaatttctaaaagtaaaaa 16441873  T
Q  121 agtaataatttc 132  Q
    |||  |||||||    
T  16441874 agttgtaatttc 16441885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 19646090 - 19646027
Alignment:
Q  52 gaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagt 115  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||    
T  19646090 gaacataaatagaaaaaatttgttgaaaaatggtgaaaagtgttgaattcaactttttaaaagt 19646027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 30748007 - 30748068
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||    
T  30748007 tcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatac 30748068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 31218963 - 31219024
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||| || |||||| |||||||||||||||||||| ||| | ||||||||||||||||    
T  31218963 tcactttaatctctgactctgcacctcgctgtcacataggtccttaactcaggattaaatac 31219024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 31219275 - 31219214
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||| ||||||||| |||||||||||||||||||| ||  | ||||||||||||||||    
T  31219275 tcactttaatccctgactctgcacctcgctgtcacataggtcattaactcaggattaaatac 31219214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 5138565 - 5138503
Alignment:
Q  52 gaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagt 115  Q
    ||||||||||| ||||| ||| || ||||||  ||||||||||||||||||| |||||||||||    
T  5138565 gaacataaatacaaatattttattaaaaaata-tgaaaaatgttgaattcaaatttctaaaagt 5138503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 27127493 - 27127586
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagt 115  Q
    |||||||||||| |  ||||||| |||||| ||  | ||||||||||| | | |||| ||||||||||||||| |||||| |||||| |||||||    
T  27127493 taaagagtgtccatgatgcattgtttaagatgataa-aaatagaaatattgtattgagaaatggtgaaaaatgatgaatttaactttttaaaagt 27127586  T

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Target: scaffold0169 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 9025 - 9093
Alignment:
Q  53 aacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaa 121  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| |||||    
T  9025 aacataaatagaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttttaaaagtcaaaaa 9093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 4867772 - 4867866
Alignment:
Q  38 gcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagtaataatttcc 133  Q
    |||||||||||||| |||||||||| ||||||||| ||||||| ||||||||| |||||||||||| ||| ||||||| |||||||  ||||||||    
T  4867772 gcattggttaagag-aacataaataaaaataatttgttgaaaagtggtgaaaagtgttgaattcaaatttttaaaagtcaaaaagttgtaatttcc 4867866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 45674164 - 45674248
Alignment:
Q  38 gcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 123  Q
    ||||||||||| || || |||||||||| |||||| ||||||||| ||||||| |||||||||||||||||| |||||||||||||    
T  45674164 gcattggttaaaagaaa-ataaatagaattaatttgttgaaaaatagtgaaaagtgttgaattcaactttcttaaagttaaaaagt 45674248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 31844730 - 31844791
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||||||||  || |||||||||||||||||||| ||||||||||||||||||||||    
T  31844730 tcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggattaaatac 31844791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 53771164 - 53771103
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||||||||| |||||||||    
T  53771164 tcactttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatac 53771103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 45684046 - 45683989
Alignment:
Q  66 ataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 123  Q
    ||||||| ||||||| ||||||||| |||||||||||| ||| |||||||||||||||    
T  45684046 ataatttgttgaaaagtggtgaaaagtgttgaattcaaatttataaaagttaaaaagt 45683989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 47878599 - 47878538
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||  ||||||||| ||||||||||||| |||||| |||||||||| |||||||||||    
T  47878599 tcactttgatccctgactctgcacctcgctgttacataggtccctgactctggattaaatac 47878538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 42392016 - 42391942
Alignment:
Q  157 tttgagtaaat--tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||  ||||||||||| ||||||  ||||||| ||||||||||| || |||||||| ||||||||||    
T  42392016 tttgagtaaatgatcactttagtctctgactccgcacctcactgtcacataggtctctgactcatgattaaatac 42391942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 47874559 - 47874633
Alignment:
Q  157 tttgagtaaat--tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||  ||||||||||| |||| | |||| |||||| |||||||| ||||||||||| ||||||||||    
T  47874559 tttgagtaaatagtcactttagtctctgattctgcagctcgctatcacataggtccctgactcaagattaaatac 47874633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 42278057 - 42278118
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||| ||| | |||| || |||||||||||| |||||||||| |||||||||||    
T  42278057 tcactttagtccttgattctgcagcttgctgtcacataggtccctgactcgggattaaatac 42278118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 53770341 - 53770402
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||||| |||||| ||||||||||  |||||||| | |||||||||| |||||||||    
T  53770341 tcactttagtctctgactctgcacctcgcattcacataggttcctgactcagaattaaatac 53770402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 26685528 - 26685488
Alignment:
Q  172 tttagtccctgactgtgcacctcgctgtcacatagatccct 212  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  26685528 tttagtccctgactctgcacctcgctgtcacataggtccct 26685488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 39868932 - 39868991
Alignment:
Q  170 actttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||| |||||| ||||||||||||| ||| || |||||||||||  |||||||||    
T  39868932 actttagtctctgactctgcacctcgctgttacaaaggtccctgactcataattaaatac 39868991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 29722067 - 29722152
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaacttt 107  Q
    ||||||||| |||| | |||||||||| | |||||| ||||||| ||| | | |||||| ||||||||||||| |||||| ||||||    
T  29722067 taaagagtgcccttagggcattggttagg-ggaacaaaaatagatatattgtgttgaaatatggtgaaaaatgatgaatttaacttt 29722152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 35911224 - 35911151
Alignment:
Q  85 tgaaaaatgttgaattcaactttctaaaagttaaaaagtaataatttccgggtgcaaaattattacttttagttt 159  Q
    |||||| |||||||||||| ||| ||||||| ||||||| ||||||| |   |||||||||| ||||||||||||    
T  35911224 tgaaaagtgttgaattcaaatttttaaaagtcaaaaagttataattttc-aatgcaaaattactacttttagttt 35911151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 54574452 - 54574494
Alignment:
Q  187 tgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||| ||||||||||||||| || |||||||||||||||||||    
T  54574452 tgcatctcgctgtcacataggtctctgactcaggattaaatac 54574494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 4703332 - 4703271
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||||  |||||| | || ||||||||||||||| ||||| |||||| |||||||||    
T  4703332 tcactttagttactgactctacatctcgctgtcacataggtccctaactcagaattaaatac 4703271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 45257608 - 45257688
Alignment:
Q  40 attggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaa 121  Q
    |||||||||||| |||| ||||||||||| ||| |||  || || |||||| || ||||||||||||| |||||| ||||||    
T  45257608 attggttaagag-aacaaaaatagaaatattttgttgggaagtgttgaaaagtggtgaattcaactttttaaaagctaaaaa 45257688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 48740135 - 48740074
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||| || || ||||||||  |||||| |||||||||||||||  |||||||||    
T  48740135 tcactttagtccatgtctctgcacctcattgtcacgtagatccctgactcataattaaatac 48740074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 7888572 - 7888643
Alignment:
Q  52 gaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 123  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| ||||||| |||||||    
T  7888572 gaacataaatagaaataatttcttgaaaaatggtgaaaagtgttgaatttaattttataaaagtaaaaaagt 7888643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 10824334 - 10824259
Alignment:
Q  39 cattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagt 115  Q
    ||||||||||||| |||||||||| ||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||    
T  10824334 cattggttaagag-aacataaataaaaataatttgttggaaagtggtgaaaaatgttgaatttaactttctaaaagt 10824259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 31091642 - 31091581
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||| |||||||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  31091642 tcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatac 31091581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 32766354 - 32766293
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||| |||||||||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  32766354 tcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatac 32766293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 39015013 - 39015074
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||||||||    
T  39015013 tcacttttgtccctgactctgcacctcgctgccacatagatccttgactcaggattaaatac 39015074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 803889 - 803980
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaa 113  Q
    ||||||||| | || | |||||||||||||| |||||||||| ||||||||| ||||||| ||||||||| | |||||||||| |||||||||    
T  803889 taaagagtgccattggagcattggttaagag-aacataaataaaaataatttgttgaaaagtggtgaaaagtattgaattcaaatttctaaaa 803980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 24459561 - 24459500
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||| |||||||||| |||| ||||||||||||||| ||||||| ||||||||||||||    
T  24459561 tcactttggtccctgactctgcatctcgctgtcacataggtccctgaatcaggattaaatac 24459500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 40000449 - 40000388
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||| |||||||||| ||||||||||||| |||||||||||||| | ||||||||||||    
T  40000449 tcactttggtccctgactctgcacctcgctgttacatagatccctgattgaggattaaatac 40000388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 2910108 - 2910169
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||  ||| | |||| |||||||||||||||||||||||||| |||||||||||    
T  2910108 tcactttagtctttgattttgcagctcgctgtcacatagatccctgactcgggattaaatac 2910169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 31090176 - 31090232
Alignment:
Q  172 tttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaata 228  Q
    |||||||||||| | |||| ||||||||||||||| ||| |||||||||||||||||    
T  31090176 tttagtccctgattctgcagctcgctgtcacataggtccttgactcaggattaaata 31090232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 445648 - 445602
Alignment:
Q  77 aaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 123  Q
    |||||||||||||| ||||||||||||||| |||||||| |||||||    
T  445648 aaaaatggtgaaaagtgttgaattcaacttcctaaaagtcaaaaagt 445602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 17330342 - 17330284
Alignment:
Q  171 ctttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||| ||| | |||| ||| ||||||||||| ||||||||||||||||||||||    
T  17330342 ctttagtccttgattctgcagctcactgtcacataggtccctgactcaggattaaatac 17330284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 24458068 - 24458129
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||| | |||| |||||| |||||||| |||||||||||  |||||||||    
T  24458068 tcactttagtccctgattatgcagctcgctatcacataggtccctgactcaaaattaaatac 24458129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 6975837 - 6975919
Alignment:
Q  39 cattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 123  Q
    |||||| |||||| |||| ||||| ||||||| | ||||||  |||||||||||||||||||||||| |||| ||||| ||||||    
T  6975837 cattggctaagag-aacaaaaataaaaataatatgttgaaag-tggtgaaaaatgttgaattcaactctctagaagtttaaaagt 6975919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 14887626 - 14887555
Alignment:
Q  157 tttgagtaaat--tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaa 226  Q
    |||||||||||  ||||||| |||||  ||| ||||||||||||||||  || |||||||||||||||||||    
T  14887626 tttgagtaaatggtcactttggtcccaaactctgcacctcgctgtcacgaaggtccctgactcaggattaaa 14887555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 15442063 - 15442025
Alignment:
Q  191 cctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  15442063 cctcgctgtcacaaagattcctgactcaggattaaatac 15442025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 33726451 - 33726405
Alignment:
Q  74 ttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 120  Q
    |||||||||||||||||||  | |||| |||||||||||||||||||    
T  33726451 ttgaaaaatggtgaaaaataataaatttaactttctaaaagttaaaa 33726405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 2239652 - 2239607
Alignment:
Q  75 tgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaa 120  Q
    ||||||||||| ||||||| |||||| |||||| ||||||||||||    
T  2239652 tgaaaaatggtaaaaaatgatgaatttaactttttaaaagttaaaa 2239607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 5915107 - 5915046
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||| ||||| ||||||||||| ||| |||| ||  |||||||| |||||||||    
T  5915107 tcactttagtccatgactctgcacctcgctttcaaataggtctttgactcagaattaaatac 5915046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 32764946 - 32765007
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||| | |||| || | ||||| |||| || |||||||||||||||||||    
T  32764946 tcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatac 32765007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 34037788 - 34037727
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||| ||||| ||||||| ||||||| | || ||| | ||||||||||||||||    
T  34037788 tcactttagtccttgactctgcaccttgctgtcataaaggtccataactcaggattaaatac 34037727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 17466930 - 17466882
Alignment:
Q  181 tgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||| |||||||||||||||||||   | |||||||||||||||||||    
T  17466930 tgactctgcacctcgctgtcacataagccgctgactcaggattaaatac 17466882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 39016496 - 39016433
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacataga--tccctgactcaggattaaatac 229  Q
    ||||||||||| |||| | |||| |||||||||||||| |  || |||||||||||||||||||    
T  39016496 tcactttagtctctgattctgcagctcgctgtcacatacatctctctgactcaggattaaatac 39016433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 29441 - 29349
Alignment:
Q  21 taaagagtgtcctttgtgcattggttaagaggaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagt 115  Q
    |||||||||||||| |  |||| |||||||| |||||||||| ||||||||| || ||||||||||| ||||||| |||||||||||||||||||    
T  29441 taaagagtgtccttggaacattcgttaagag-aacataaataaaaataatttgttaaaaaatggtgagaaatgtt-aattcaactttctaaaagt 29349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 13651234 - 13651174
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  13651234 tcactttagtccttgactgtgcacct-gctgtcacataggtccctgactcaggattaaatac 13651174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 28591229 - 28591168
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||  ||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  28591229 tcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatac 28591168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 18400198 - 18400258
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaata 228  Q
    |||||||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||    
T  18400198 tcactttagtccctgactctgcacctcactgtcacataggtccttgactcaggattaaata 18400258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 8074459 - 8074520
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||| | |||| ||||||||||||||  ||||||||||||||||||||||    
T  8074459 tcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatac 8074520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 546150 - 546090
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||||||| || | |||| ||||||||||||||| ||||||||||||||||||||||    
T  546150 tcactttagtccc-gattttgcagctcgctgtcacataggtccctgactcaggattaaatac 546090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 9538164 - 9538103
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||| |||||||||| |||| |||| ||||| |||| ||||||||||||||||||||||    
T  9538164 tcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatac 9538103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 21069297 - 21069358
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||||| |||||| ||||||||| ||||||| || || |||||||||||||||||||    
T  21069297 tcactttagtctctgactctgcacctcgttgtcacagaggtctctgactcaggattaaatac 21069358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 40612774 - 40612713
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||| | |||| ||| ||||||| ||| ||||||||||||||||||||||    
T  40612774 tcactttagtccctgattttgcagctcactgtcacgtaggtccctgactcaggattaaatac 40612713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 19182971 - 19183019
Alignment:
Q  181 tgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||| |||||||||||||||||||| || |||||||||||||||||||    
T  19182971 tgactttgcacctcgctgtcacataggtctctgactcaggattaaatac 19183019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 9537033 - 9537092
Alignment:
Q  170 actttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||| ||| |||||||||||||||||||| || |||||| || |||||||||    
T  9537033 actttagtccctcactctgcacctcgctgtcacataggtctctgacttagaattaaatac 9537092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 14891258 - 14891199
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaat 227  Q
    ||||||| |||||| ||| |||||||||||||||||||| || |||||||| ||||||||    
T  14891258 tcactttggtccctcactctgcacctcgctgtcacataggtctctgactcatgattaaat 14891199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 28782773 - 28782706
Alignment:
Q  56 ataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttctaaaagttaaaaagt 123  Q
    ||||||||||||||||| || |||||| || |||| ||||||||||||| || ||||||| |||||||    
T  28782773 ataaatagaaataatttgttaaaaaattgtaaaaagtgttgaattcaacattttaaaagtaaaaaagt 28782706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 4592869 - 4592930
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||||| | || | ||||||||||||||  ||||||||||| ||||||||||    
T  4592869 tcactttagtccctgattatgtagctcgctgtcacataagtccctgactcaagattaaatac 4592930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 16611736 - 16611797
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||| | | ||||| | |||||||||||||||||| || |||||||||||||||||||    
T  16611736 tcactttaattcttgactctacacctcgctgtcacataggtctctgactcaggattaaatac 16611797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 25590451 - 25590499
Alignment:
Q  180 ctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||| |||||||||||||||||||| |||||||||| |||||||||||    
T  25590451 ctgactctgcacctcgctgtcacataggtccctgactc-ggattaaatac 25590499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 10317315 - 10317259
Alignment:
Q  52 gaacataaatagaaataatttcttgaaaaatggtgaaaaatgttgaattcaactttc 108  Q
    ||||| ||||||||| ||| | |||||||||| |||||| |||||||||||||||||    
T  10317315 gaacaaaaatagaaagaatgtgttgaaaaatgatgaaaagtgttgaattcaactttc 10317259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 2464677 - 2464738
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||||||||| |||| | |||| |||||||||| |||| ||| ||||||| ||||||||||    
T  2464677 tcactttagtcactgattctgcagctcgctgtcatataggtccatgactcatgattaaatac 2464738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 24900447 - 24900410
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacata 205  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  24900447 tcactttggtccctgactctgcacctcgctgtcacata 24900410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 2466889 - 2466829
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaata 228  Q
    ||||||| ||| |||||| ||||||||||| |||||||| ||  ||| |||||||||||||    
T  2466889 tcactttggtctctgactctgcacctcgctatcacataggtcattgattcaggattaaata 2466829  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 8075935 - 8075887
Alignment:
Q  181 tgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    ||||| ||||||||||||| | |||||||||||| ||| ||||||||||    
T  8075935 tgactctgcacctcgctgttagatagatccctgattcaagattaaatac 8075887  T

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Target: scaffold0034 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 116063 - 116124
Alignment:
Q  168 tcactttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||| ||| | | |||| ||||||||||||||| ||||||||||||||||||||||    
T  116063 tcactttagttcctcattctgcagctcgctgtcacataggtccctgactcaggattaaatac 116124  T

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Target: scaffold0039 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 79085 - 79141
Alignment:
Q  172 tttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaata 228  Q
    |||||| ||||||| |||||||||||||||||||| ||| ||||||| |||||||||    
T  79085 tttagttcctgactctgcacctcgctgtcacataggtccttgactcatgattaaata 79141  T

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Target: scaffold0039; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 74424 - 74367
Alignment:
Q  172 tttagtccctgactgtgcacctcgctgtcacatagatccctgactcaggattaaatac 229  Q
    |||||||||||||| |||| ||| ||||||||||| ||||| ||||| ||||||||||    
T  74424 tttagtccctgactctgcaactcactgtcacataggtccctaactcatgattaaatac 74367  T

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