View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10161_low_43 (Length: 227)
Name: NF10161_low_43
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10161_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 43548049 - 43547921
Alignment:
| Q |
1 |
aactaatgcaatgcttcaacccaaagcaaacggttataaaagagaaagtcatgatttgaacataaataggttcaatacaatacaaaaagcataatgaaat |
100 |
Q |
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| T |
43548049 |
aactaatgcaatgcttcaacccaaagcaaacggttataaaagagaaagtcatgatttgaacataaataggttcaatacaatacaaaaagcataatgaaat |
43547950 |
T |
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| Q |
101 |
caaattgatcctagactagtagaaatagg |
129 |
Q |
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| T |
43547949 |
caaatcgatcctagactagtagaaatagg |
43547921 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 227
Target Start/End: Complemental strand, 43547853 - 43547823
Alignment:
| Q |
197 |
tagttaaccataacaagacattctagagtgc |
227 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
43547853 |
tagttaaccataacaagacattctagagtgc |
43547823 |
T |
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