View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10161_low_44 (Length: 224)
Name: NF10161_low_44
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10161_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 48693856 - 48693664
Alignment:
| Q |
18 |
ctatgattgatacttcttctaacatatcttgatcatttcctggcttttctatattgaactgctttccaacatcagctccaatatcttctggccacattga |
117 |
Q |
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| T |
48693856 |
ctatgattgatacttcttctaacacatcttgatcatttcctggcttttctatattgaactgctttccaacatcagctccaatatcttctggccacattga |
48693757 |
T |
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| Q |
118 |
aggaaggacttcaatttccataatatcctcaacacactctttttccataatatcttctattctatactacacaactttgtgatatcaattctt |
210 |
Q |
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| T |
48693756 |
aggaaggacttcaatttccataatatcctcaacacactctttttccataatatcttctattctatactacacaactttgtgatatcaattctt |
48693664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 3456967 - 3457064
Alignment:
| Q |
22 |
gattgatacttcttctaacatatcttgatcatttcctggcttttctatattgaactgctttccaacatcagctccaatatcttctggccacattgaag |
119 |
Q |
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||||| ||||||||| |||||||||||||| ||||||| |||||||| ||||| || ||||||||||||| ||||| |||||||||||||||||||| |
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| T |
3456967 |
gattgttacttcttccaacatatcttgatctcttcctggtttttctatgttgaattgttttccaacatcagttccaacatcttctggccacattgaag |
3457064 |
T |
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