View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10161_low_45 (Length: 210)
Name: NF10161_low_45
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10161_low_45 |
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| [»] scaffold1918 (5 HSPs) |
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Alignment Details
Target: scaffold1918 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: scaffold1918
Description:
Target: scaffold1918; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 49 - 200
Target Start/End: Complemental strand, 360 - 209
Alignment:
| Q |
49 |
ttacatttacaagtcgccaccgcctccctcaccgtcacctccaccatcttacatttacaaatctccaccacctccaccctatgagcacaagtctccatct |
148 |
Q |
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| T |
360 |
ttacatttacaagtcaccaccgcctccctcaccgtcacctccaccatcttacatttacaaatctccaccacctccaccctatgagcacaagtctccatct |
261 |
T |
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| Q |
149 |
tatgaatataagtctcccccacctccttcaccatcacccccaccaccctatg |
200 |
Q |
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| T |
260 |
tatgaatataagtctcccccacctccttcaccatcacccccaccaccctatg |
209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1918; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 518 - 450
Alignment:
| Q |
56 |
tacaagtcgccaccgcctccctcaccgtcacctccaccatcttacatttacaaatctccaccacctcca |
124 |
Q |
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| T |
518 |
tacaagtcacccccacctccatcaccatcacctccaccaccttacatttacaagtcaccaccacctcca |
450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1918; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 434 - 361
Alignment:
| Q |
122 |
ccaccctatgagcacaagtctccatcttatgaatataagtctcccccacctccttcaccatcacccccaccacc |
195 |
Q |
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| T |
434 |
ccaccatatgagcacaaggctccatcttaccagtacaagtcacccccaccaccatcaccatcaccaccaccacc |
361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1918; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 477 - 432
Alignment:
| Q |
49 |
ttacatttacaagtcgccaccgcctccctcaccgtcacctccacca |
94 |
Q |
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| T |
477 |
ttacatttacaagtcaccaccacctccatcaccgtcacctccacca |
432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1918; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 559 - 478
Alignment:
| Q |
114 |
caccacctccaccctatgagcacaagtctccatcttatgaatataagtctcccccacctccttcaccatcacccccaccacc |
195 |
Q |
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| T |
559 |
caccaccgcctccatatgagcacaaggcaccatcttaccagtacaagtcacccccacctccatcaccatcacctccaccacc |
478 |
T |
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