View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10161_low_46 (Length: 203)
Name: NF10161_low_46
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10161_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 53431709 - 53431878
Alignment:
| Q |
15 |
atgaacaagacctaatccacccatcccttgcaccgttttaattttgttattggttgagtaatcatcatcacttattccatcacaaatgacaatctttcct |
114 |
Q |
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| T |
53431709 |
atgaacaagacctaatccacccatcccttgcaccgttttaattttgttattggttgagtaatcatcatcacttattccatcacaaatgacaatctttcct |
53431808 |
T |
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| Q |
115 |
ttgacttttttcttatttaatgaatttgggtgacattgcctgcatttcaaaaataaatgttagtttgtct |
184 |
Q |
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| T |
53431809 |
ttgacttttttcttatttaatgaatttgggtgacattgcctgcatttcaaaaataaatgttagtttgtct |
53431878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 53424560 - 53424691
Alignment:
| Q |
15 |
atgaacaagacctaatccacccatcccttgcaccgttttaattttgttattggttgagtaatcatcatcacttattccatcacaaatgacaatctttcct |
114 |
Q |
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| T |
53424560 |
atgaacaagacctaatccacccatctcttgcgccattttaatcttgtcatagattgtgtaaccatcatc---tatgccatcacatatgacaatctttcct |
53424656 |
T |
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| Q |
115 |
ttgacttttttcttatttaatgaatttgggtgaca |
149 |
Q |
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| T |
53424657 |
ttgactttgttcgtatctaatgaatttgggtgaca |
53424691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 48374005 - 48373843
Alignment:
| Q |
15 |
atgaacaagacctaatccacccatcccttgcaccgttttaattttgttattggttgagtaatcatcatcacttattccatcacaaatgacaatctttcct |
114 |
Q |
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| T |
48374005 |
atgaacaagacctaatccacccgcctcttgcaccgtcctaattttttcatcggttgaataatcaccatc---taccccatcgcagatgacaatatttcct |
48373909 |
T |
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| Q |
115 |
ttgacttttttcttatttaatgaatttgggtgacattgcctgcatttcaaaaataaatgttagtttg |
181 |
Q |
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| T |
48373908 |
tcaacttttttcttatctaatgaacttggatgacactgactgcacttcataaa-gaatgttagtttg |
48373843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 26096526 - 26096594
Alignment:
| Q |
92 |
catcacaaatgacaatctttcctttgacttttttcttatttaatgaatttgggtgacattgcctgcatt |
160 |
Q |
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| T |
26096526 |
catcacatatgacaatctttcctttgacttttttcttgtctaatgaacttggagaacattgcctacatt |
26096594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 53319799 - 53319837
Alignment:
| Q |
105 |
aatctttcctttgacttttttcttatttaatgaatttgg |
143 |
Q |
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| T |
53319799 |
aatctttcctttgacttttttcttatctagtgaatttgg |
53319837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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