View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10161_low_6 (Length: 470)

Name: NF10161_low_6
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10161_low_6
NF10161_low_6
[»] chr3 (3 HSPs)
chr3 (20-459)||(49431230-49431668)
chr3 (286-331)||(30080713-30080758)
chr3 (247-328)||(30681913-30681993)
[»] chr8 (2 HSPs)
chr8 (283-343)||(43950379-43950439)
chr8 (245-302)||(27563022-27563078)
[»] chr5 (3 HSPs)
chr5 (254-302)||(34278717-34278764)
chr5 (272-302)||(26440619-26440649)
chr5 (285-341)||(25773384-25773440)
[»] chr1 (3 HSPs)
chr1 (285-337)||(30005789-30005841)
chr1 (257-302)||(32834860-32834904)
chr1 (245-302)||(43891471-43891527)
[»] chr7 (3 HSPs)
chr7 (282-345)||(42669409-42669472)
chr7 (290-372)||(7380964-7381045)
chr7 (282-342)||(16870652-16870712)
[»] chr6 (3 HSPs)
chr6 (296-342)||(406875-406921)
chr6 (285-342)||(34500902-34500959)
chr6 (254-306)||(24718140-24718191)
[»] chr4 (1 HSPs)
chr4 (275-341)||(19533988-19534054)
[»] chr2 (2 HSPs)
chr2 (254-304)||(14802918-14802967)
chr2 (275-347)||(15300334-15300406)


Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 20 - 459
Target Start/End: Original strand, 49431230 - 49431668
Alignment:
Q  20 aaagcgatgagtttctttcacaaacca-tttcattaatgtgaaaattcaatcaaaacgaaataaattggtttaaagttcaaatcaaattgagcagcacaa 118  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49431230 aaagtgatgagtttctttcacaaaccagtttcattaatgtgaaaattcaatcaaaacgaaataaattggtttaaagttcaaatcaaattgagcagcacaa 49431329  T
Q  119 gattaagaacaagttaattatacctgcaaggttaattaagaatgctactctcactccttcctctttgaagcacccaattcctcttcagccttttgcctct 218  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49431330 gattaagaacaagttaattataccggcaagtttaattaagaatgctactctcactccttcctctttgaagcacccaattcctcttcagccttttgcctct 49431429  T
Q  219 ggcctcgcacaaaataataatatcaaagacaaatccaacatcttaaatgttactattttgtcgttatatattagtagaaaaatatgataaaagtatgtaa 318  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49431430 ggcctcgcacaaaataataatatcaaagataaatccaacatcttaaatgttactattttgtcgttatatattaatagaaaaatatgataaaagtatgtaa 49431529  T
Q  319 tttgaatagtgcatattgtcaaactagatatcttattttgggacgaaggtagtaggatgtttcatattcttatgatacttaaaagtatgtaatttaggtg 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||     || |||    
T  49431530 tttgaatagtgcatattgtcaaactagatatcttattttgggacgaaggtagtaggatgtttcatattcttatgatactt-aatttatg-cggataagtg 49431627  T
Q  419 gagtattatttactctgatgtttcactttcctatgatactt 459  Q
     | ||||||||||||||||||||||||||| ||||||||||    
T  49431628 aaatattatttactctgatgtttcactttcttatgatactt 49431668  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 30080713 - 30080758
Alignment:
Q  286 atattagtagaaaaatatgataaaagtatgtaatttgaatagtgca 331  Q
    ||||||||||||||||||||| ||||||||| |  |||||||||||    
T  30080713 atattagtagaaaaatatgatcaaagtatgttacgtgaatagtgca 30080758  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 328
Target Start/End: Original strand, 30681913 - 30681993
Alignment:
Q  247 acaaatccaacatcttaaatgttactattttgtcgttatatattagtagaaaaatatgataaaagtatgtaatttgaatagt 328  Q
    |||||| |||||||||| |||||| || ||| || || ||||||| |||||||||||||| || |||||| || ||||||||    
T  30681913 acaaattcaacatcttatatgtta-taatttatctttgtatattattagaaaaatatgatcaaggtatgttatgtgaatagt 30681993  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 43950379 - 43950439
Alignment:
Q  283 tatatattagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaact 343  Q
    ||||||||||||||||||| || | ||||||||| || ||||||||||| || ||||||||    
T  43950379 tatatattagtagaaaaatttggtcaaagtatgttatgtgaatagtgcacatagtcaaact 43950439  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 27563022 - 27563078
Alignment:
Q  245 agacaaatccaacatcttaaatgttactattttgtcgttatatattagtagaaaaata 302  Q
    |||| |||||||||||||| ||| || |||||| || |||||||||||||||||||||    
T  27563022 agacgaatccaacatcttatatgcta-tattttatctttatatattagtagaaaaata 27563078  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 34278717 - 34278764
Alignment:
Q  254 caacatcttaaatgttactattttgtcgttatatattagtagaaaaata 302  Q
    |||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  34278717 caacatcttatatgtta-tattttgtctttatatattagtagaaaaata 34278764  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 302
Target Start/End: Original strand, 26440619 - 26440649
Alignment:
Q  272 tattttgtcgttatatattagtagaaaaata 302  Q
    |||||||||||||||||||||||||||||||    
T  26440619 tattttgtcgttatatattagtagaaaaata 26440649  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 341
Target Start/End: Original strand, 25773384 - 25773440
Alignment:
Q  285 tatattagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaa 341  Q
    |||||||||||||||||||| | ||||||||| |  | ||||||||| |||||||||    
T  25773384 tatattagtagaaaaatatggtcaaagtatgttaggtcaatagtgcacattgtcaaa 25773440  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 30005789 - 30005841
Alignment:
Q  285 tatattagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgt 337  Q
    |||||||||||||||||||||| |||||||||||| | || |||||| |||||    
T  30005789 tatattagtagaaaaatatgattaaagtatgtaatgtcaaaagtgcacattgt 30005841  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 32834904 - 32834860
Alignment:
Q  257 catcttaaatgttactattttgtcgttatatattagtagaaaaata 302  Q
    ||||||| |||||| ||||||||| |||||||||||||||||||||    
T  32834904 catcttatatgtta-tattttgtctttatatattagtagaaaaata 32834860  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 43891527 - 43891471
Alignment:
Q  245 agacaaatccaacatcttaaatgttactattttgtcgttatatattagtagaaaaata 302  Q
    |||| |||||||||||||| || ||| |||||||||  ||||||||||||||||||||    
T  43891527 agacgaatccaacatcttatatatta-tattttgtctgtatatattagtagaaaaata 43891471  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 345
Target Start/End: Original strand, 42669409 - 42669472
Alignment:
Q  282 ttatatattagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaactag 345  Q
    ||||||||| ||||||||||||| | ||||| ||| || ||||||||||| || ||||||||||    
T  42669409 ttatatattggtagaaaaatatggttaaagtgtgttatgtgaatagtgcacatagtcaaactag 42669472  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 372
Target Start/End: Original strand, 7380964 - 7381045
Alignment:
Q  290 tagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaactagatatcttattttgggacgaaggtagta 372  Q
    ||||||||||| ||||||||| ||||| ||||||||| || |||| ||| |||||  |  ||||||||| |||||||||||||    
T  7380964 tagtagaaaaacatgataaaaatatgttatttgaataatgtatatagtc-aactatgtcacttattttgagacgaaggtagta 7381045  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 16870652 - 16870712
Alignment:
Q  282 ttatatattagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaac 342  Q
    ||||||||||||  | ||||||| | |||||| || |||||||||||||||||||| ||||    
T  16870652 ttatatattagttaacaaatatggtcaaagtaagttatttgaatagtgcatattgtaaaac 16870712  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 406921 - 406875
Alignment:
Q  296 aaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaac 342  Q
    ||||||||||| ||||||| | ||||||||| |||||||||||||||    
T  406921 aaaaatatgattaaagtatatgatttgaataatgcatattgtcaaac 406875  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 342
Target Start/End: Complemental strand, 34500959 - 34500902
Alignment:
Q  285 tatattagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaac 342  Q
    |||||||||||||||||||||| ||||||||| |  | || |||||| ||||||||||    
T  34500959 tatattagtagaaaaatatgatcaaagtatgtcaggtcaaaagtgcacattgtcaaac 34500902  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 24718140 - 24718191
Alignment:
Q  254 caacatcttaaatgttactattttgtcgttatatattagtagaaaaatatgat 306  Q
    |||||||||| ||| |||||||| ||| ||||||| |||||||||||||||||    
T  24718140 caacatcttagatgctactattt-gtctttatataatagtagaaaaatatgat 24718191  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 19533988 - 19534054
Alignment:
Q  275 tttgtcgttatatattagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaa 341  Q
    |||||| || |||||||||||||||||||  | ||||||||| || |||||| |||||||| |||||    
T  19533988 tttgtctttgtatattagtagaaaaatattgtcaaagtatgttatatgaataatgcatattttcaaa 19534054  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 14802918 - 14802967
Alignment:
Q  254 caacatcttaaatgttactattttgtcgttatatattagtagaaaaatatg 304  Q
    |||||||||| ||| || ||||||||| |||||||||||||||||||||||    
T  14802918 caacatcttatatgcta-tattttgtctttatatattagtagaaaaatatg 14802967  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 15300334 - 15300406
Alignment:
Q  275 tttgtcgttatatattagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaactagat 347  Q
    |||||| |||||||||||||||||| |||| | ||||||||| || || ||| |||| || |||||| |||||    
T  15300334 tttgtctttatatattagtagaaaattatggttaaagtatgttatgtggataatgcacatggtcaaattagat 15300406  T

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