View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10161_low_7 (Length: 466)
Name: NF10161_low_7
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10161_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 37214849 - 37215295
Alignment:
| Q |
1 |
ttaccaagagtggtggtccacagaaagtattaccaattgagataccctcgatatcattggctgagttaaatagattaacaggaaactttggttcaaaggc |
100 |
Q |
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| T |
37214849 |
ttaccaagagtggtggtccacagaaagtattaccaattgagataccctcgatatcattggctgagttaaatagattaacaggaaactttggttcaaaggc |
37214948 |
T |
|
| Q |
101 |
cttcattggtgaaggttcgtatggaagggtttactatgcaaaaatgaatgatggtactgaagctgcaatcaaaaggctggatacaagttcttcacctgat |
200 |
Q |
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| T |
37214949 |
cttcattggtgaaggttcgtatggaagggtttactatgcaaaaatgaatgatggtactgaagctgcaatcaaaaggctggatacaagttcttcacctgat |
37215048 |
T |
|
| Q |
201 |
tccgactccaacgatttcgcggctcaggtaagnnnnnnntatttaaagcaatgatttggctctttgtgttgtcactcatattttatcatgttactatatg |
300 |
Q |
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| T |
37215049 |
tccgactccaacgatttcgcggctcaggtaagaaaaaattatttaaagcaatgatttggctcttggtgttgtcactcatattttatcatgttactatatg |
37215148 |
T |
|
| Q |
301 |
gattttgcagttatcagttgtttcaagactcaagcatgacaattttgtagagttgacgggatattgtctagaagcagacaacagaattttggtttatcaa |
400 |
Q |
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| T |
37215149 |
gattttgcagttatcagttgtttcaagactcaagcatgacaattttgtagagttgacgggatattgtctagaagcagacaacagaattttggtttatcaa |
37215248 |
T |
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| Q |
401 |
tatgcaagtttgggttctttgcatgatgtattacatggtaggcctat |
447 |
Q |
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| T |
37215249 |
tatgcaagtttgggttctttgcatgatgtattacacggtaggcctat |
37215295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 423
Target Start/End: Original strand, 23408553 - 23408668
Alignment:
| Q |
308 |
cagttatcagttgtttcaagactcaagcatgacaattttgtagagttgacgggatattgtctagaagcagacaacagaattttggtttatcaatatgcaa |
407 |
Q |
| |
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|||||| || ||||||||||||| ||| |||| | ||||| | ||||| |||||||| ||| || ||| | ||||||||||||||||| |||||||||| |
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| T |
23408553 |
cagttagcaattgtttcaagactgaagaatgaacactttgtggggttgatgggatattctcttgaggcaaataacagaattttggtttaccaatatgcaa |
23408652 |
T |
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| Q |
408 |
gtttgggttctttgca |
423 |
Q |
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| T |
23408653 |
gtcttggttcgttgca |
23408668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 52717091 - 52717148
Alignment:
| Q |
84 |
aactttggttcaaaggccttcattggtgaaggttcgtatggaagggtttactatgcaa |
141 |
Q |
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|||||||| |||||||| || ||||||||||| |||||||| ||||| || ||||||| |
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| T |
52717091 |
aactttggatcaaaggcattgattggtgaagggtcgtatgggagggtgtattatgcaa |
52717148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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