View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10161_low_9 (Length: 428)
Name: NF10161_low_9
Description: NF10161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10161_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Complemental strand, 8789049 - 8788646
Alignment:
| Q |
12 |
atcaagaacatgttctatattgtcattattatggctgatatcattttcatttaatcaactttttctcattattttaaaaggtttaattttcatgcacatg |
111 |
Q |
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| T |
8789049 |
atcaagaacatgttctatattgtcattattatggctgatatcattttcatttaatcaactttttctcattattttaaa-ggtttaattttcatgcacatg |
8788951 |
T |
|
| Q |
112 |
taaatttaacaagttttacattaatatcaggataacttagctagtgtgcacttataagcccaccctaccattgagtaaggccgaaagagaagggaggcca |
211 |
Q |
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| T |
8788950 |
taaatttaacaagttttacattaatatcagcataacttagctagtgtgcacttataagcccaccctaccattgagtaaggccgaaagagaagggaggcca |
8788851 |
T |
|
| Q |
212 |
cctcataaagctgttaaagagagggattaacactgtatattgtacagtgggggagggggtgaaagtaggactatatatataggaggaagtggtcctatat |
311 |
Q |
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| T |
8788850 |
cctcataaagctgttaaagagagggattaacactgtatattgtacagtgggggagggggtgaaagtaggactatatagataggaggaagtggtcctatat |
8788751 |
T |
|
| Q |
312 |
cctaagttcctaacaacaaatgctatatgcatgtagctcatgctatagctatatttgagaagacaacagtttccccgtacccttaattattgtcatccat |
411 |
Q |
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| T |
8788750 |
cctaagttcctaacaacaaatgctatatgcatgtagctcatgctatagctatatttgagaagacaacagtttccccgtacccttaattattgtcatccat |
8788651 |
T |
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| Q |
412 |
accta |
416 |
Q |
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| T |
8788650 |
accta |
8788646 |
T |
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