View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10162_high_1 (Length: 719)

Name: NF10162_high_1
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10162_high_1
NF10162_high_1
[»] chr2 (19 HSPs)
chr2 (19-707)||(10618353-10619041)
chr2 (30-104)||(44439249-44439324)
chr2 (104-199)||(36307044-36307139)
chr2 (32-168)||(4894099-4894244)
chr2 (110-199)||(11759770-11759859)
chr2 (112-184)||(42774783-42774854)
chr2 (34-98)||(42982544-42982608)
chr2 (19-96)||(3476452-3476530)
chr2 (32-98)||(42740975-42741041)
chr2 (47-104)||(33961996-33962053)
chr2 (121-197)||(4007116-4007192)
chr2 (29-85)||(12037056-12037112)
chr2 (160-195)||(5973619-5973654)
chr2 (116-199)||(12110918-12111001)
chr2 (104-198)||(680203-680296)
chr2 (32-98)||(3352074-3352140)
chr2 (114-200)||(6767764-6767850)
chr2 (48-98)||(16488342-16488392)
chr2 (19-85)||(22535983-22536049)
[»] chr3 (36 HSPs)
chr3 (35-197)||(35264324-35264495)
chr3 (19-96)||(35058346-35058423)
chr3 (19-195)||(37334949-37335134)
chr3 (137-193)||(50427184-50427240)
chr3 (19-104)||(36302168-36302253)
chr3 (19-104)||(44958621-44958706)
chr3 (19-91)||(40147878-40147950)
chr3 (104-191)||(584712-584799)
chr3 (115-197)||(31766160-31766242)
chr3 (104-198)||(32112073-32112167)
chr3 (36-168)||(3776524-3776665)
chr3 (121-197)||(42644302-42644379)
chr3 (44-105)||(51285580-51285641)
chr3 (60-104)||(46853549-46853593)
chr3 (19-104)||(30301013-30301099)
chr3 (116-182)||(52925551-52925617)
chr3 (113-186)||(1441331-1441404)
chr3 (121-182)||(25577696-25577757)
chr3 (133-197)||(30958145-30958209)
chr3 (133-197)||(30973957-30974021)
chr3 (135-199)||(42913164-42913228)
chr3 (167-199)||(49356304-49356336)
chr3 (123-198)||(25620179-25620254)
chr3 (30-85)||(52364047-52364102)
chr3 (19-73)||(7717367-7717421)
chr3 (54-104)||(23187865-23187915)
chr3 (122-180)||(24916581-24916639)
chr3 (104-198)||(25129451-25129545)
chr3 (30-104)||(25359589-25359663)
chr3 (27-97)||(27499383-27499453)
chr3 (19-88)||(41115392-41115462)
chr3 (104-194)||(41591269-41591359)
chr3 (112-182)||(48089618-48089688)
chr3 (130-199)||(44958553-44958622)
chr3 (161-198)||(49158656-49158693)
chr3 (110-199)||(53567961-53568050)
[»] chr6 (21 HSPs)
chr6 (18-104)||(1485161-1485247)
chr6 (104-199)||(1499979-1500074)
chr6 (19-98)||(2234500-2234579)
chr6 (18-164)||(34620870-34621025)
chr6 (18-164)||(34748307-34748462)
chr6 (20-104)||(30926793-30926878)
chr6 (44-199)||(9505780-9505944)
chr6 (30-104)||(34898691-34898766)
chr6 (121-186)||(7953079-7953144)
chr6 (113-197)||(46201-46285)
chr6 (113-197)||(765298-765382)
chr6 (47-95)||(10874507-10874555)
chr6 (122-197)||(3436796-3436871)
chr6 (44-98)||(31305868-31305922)
chr6 (113-168)||(882774-882829)
chr6 (104-199)||(3525004-3525099)
chr6 (107-182)||(22692639-22692714)
chr6 (19-105)||(852517-852603)
chr6 (151-197)||(20871627-20871673)
chr6 (19-96)||(5724653-5724730)
chr6 (61-98)||(34027438-34027475)
[»] chr7 (22 HSPs)
chr7 (30-148)||(41788312-41788439)
chr7 (30-94)||(27571858-27571922)
chr7 (18-91)||(5489874-5489947)
chr7 (104-197)||(40491657-40491750)
chr7 (104-182)||(40795917-40795995)
chr7 (32-105)||(30182310-30182383)
chr7 (29-98)||(38123687-38123756)
chr7 (131-183)||(39734639-39734691)
chr7 (19-98)||(45005005-45005084)
chr7 (100-197)||(42481803-42481900)
chr7 (121-197)||(35105254-35105330)
chr7 (113-168)||(29829311-29829366)
chr7 (120-198)||(48158913-48158991)
chr7 (44-168)||(15050303-15050436)
chr7 (135-191)||(597862-597918)
chr7 (18-98)||(1410946-1411026)
chr7 (30-104)||(597961-598034)
chr7 (33-83)||(28725088-28725138)
chr7 (122-199)||(5489781-5489857)
chr7 (113-154)||(35222074-35222115)
chr7 (25-98)||(41386836-41386909)
chr7 (117-182)||(44856719-44856784)
[»] chr1 (31 HSPs)
chr1 (18-104)||(10324953-10325039)
chr1 (36-197)||(3515820-3515979)
chr1 (32-104)||(20026179-20026251)
chr1 (44-195)||(33693031-33693172)
chr1 (104-199)||(11817228-11817323)
chr1 (32-98)||(28083909-28083975)
chr1 (29-91)||(47892416-47892478)
chr1 (121-197)||(13344837-13344913)
chr1 (19-94)||(6021789-6021864)
chr1 (29-104)||(28287351-28287426)
chr1 (161-199)||(22548210-22548248)
chr1 (159-197)||(47899387-47899425)
chr1 (104-197)||(7524192-7524285)
chr1 (29-98)||(11049245-11049314)
chr1 (104-181)||(15514998-15515075)
chr1 (54-99)||(29759632-29759677)
chr1 (32-85)||(48549046-48549099)
chr1 (30-98)||(24587905-24587976)
chr1 (159-199)||(38512453-38512493)
chr1 (116-183)||(4347033-4347100)
chr1 (103-182)||(28464923-28465002)
chr1 (104-191)||(35961447-35961534)
chr1 (151-202)||(49537195-49537246)
chr1 (62-104)||(213552-213594)
chr1 (29-98)||(6574175-6574245)
chr1 (26-104)||(7790657-7790735)
chr1 (20-86)||(29964085-29964151)
chr1 (32-98)||(34387714-34387780)
chr1 (63-104)||(17284125-17284166)
chr1 (103-176)||(26382761-26382834)
chr1 (104-197)||(32369944-32370037)
[»] chr4 (31 HSPs)
chr4 (44-104)||(33843987-33844047)
chr4 (104-199)||(43868215-43868310)
chr4 (19-184)||(55927696-55927870)
chr4 (44-104)||(37439155-37439215)
chr4 (19-98)||(2635148-2635227)
chr4 (19-98)||(32818391-32818470)
chr4 (115-197)||(38740287-38740369)
chr4 (44-85)||(8330126-8330167)
chr4 (32-98)||(2206364-2206431)
chr4 (53-104)||(4243406-4243457)
chr4 (19-197)||(22250211-22250398)
chr4 (113-199)||(20911810-20911896)
chr4 (53-107)||(33843702-33843756)
chr4 (33-98)||(1048716-1048781)
chr4 (44-105)||(10185204-10185265)
chr4 (135-199)||(24364103-24364167)
chr4 (26-98)||(30357504-30357576)
chr4 (135-199)||(48575494-48575558)
chr4 (124-199)||(5835778-5835853)
chr4 (111-182)||(17898057-17898127)
chr4 (30-104)||(18597035-18597110)
chr4 (47-94)||(20712664-20712710)
chr4 (121-179)||(1023849-1023907)
chr4 (15-96)||(2206498-2206580)
chr4 (48-98)||(2206850-2206900)
chr4 (32-94)||(9064229-9064291)
chr4 (117-191)||(35122301-35122375)
chr4 (19-85)||(51093243-51093309)
chr4 (121-182)||(2206622-2206683)
chr4 (164-201)||(25405729-25405766)
chr4 (122-195)||(50945390-50945463)
[»] scaffold0361 (1 HSPs)
scaffold0361 (30-180)||(14044-14202)
[»] chr5 (18 HSPs)
chr5 (115-197)||(14299416-14299498)
chr5 (44-105)||(24306110-24306171)
chr5 (44-105)||(24367145-24367206)
chr5 (26-85)||(3738142-3738201)
chr5 (23-90)||(34250380-34250447)
chr5 (19-98)||(42858093-42858172)
chr5 (122-182)||(5465398-5465458)
chr5 (144-199)||(707644-707699)
chr5 (152-199)||(4848064-4848111)
chr5 (103-198)||(4975053-4975147)
chr5 (103-198)||(6095243-6095338)
chr5 (19-58)||(14299726-14299765)
chr5 (104-199)||(14671104-14671198)
chr5 (123-186)||(35138947-35139010)
chr5 (104-186)||(117420-117502)
chr5 (161-199)||(2124244-2124282)
chr5 (32-101)||(18585325-18585394)
chr5 (44-85)||(36927744-36927785)
[»] chr8 (28 HSPs)
chr8 (29-184)||(26100072-26100236)
chr8 (133-196)||(7602042-7602105)
chr8 (104-197)||(32927971-32928064)
chr8 (103-197)||(10368043-10368137)
chr8 (103-200)||(3206135-3206231)
chr8 (104-185)||(28805254-28805335)
chr8 (147-199)||(1820460-1820512)
chr8 (147-199)||(1854905-1854957)
chr8 (18-98)||(13418840-13418920)
chr8 (30-100)||(4554330-4554401)
chr8 (104-199)||(9461450-9461544)
chr8 (141-195)||(4336571-4336625)
chr8 (110-180)||(4950568-4950638)
chr8 (32-98)||(13384675-13384741)
chr8 (161-199)||(18355760-18355798)
chr8 (104-197)||(18123305-18123398)
chr8 (115-183)||(1373081-1373149)
chr8 (58-94)||(3478728-3478764)
chr8 (29-85)||(15677850-15677906)
chr8 (141-181)||(30706283-30706323)
chr8 (103-191)||(38516328-38516416)
chr8 (23-98)||(38868487-38868562)
chr8 (151-197)||(26559864-26559910)
chr8 (135-197)||(32994153-32994215)
chr8 (161-199)||(35550309-35550347)
chr8 (121-199)||(38715192-38715270)
chr8 (145-198)||(5893332-5893385)
chr8 (135-176)||(32681238-32681279)
[»] scaffold0172 (1 HSPs)
scaffold0172 (116-199)||(15240-15323)


Alignment Details
Target: chr2 (Bit Score: 677; Significance: 0; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 19 - 707
Target Start/End: Complemental strand, 10619041 - 10618353
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtttttatataaatgta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10619041 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtttttatataaatgta 10618942  T
Q  119 tacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaattttaaacatacttttagccatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10618941 tacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaattttaaacatacttttagccatt 10618842  T
Q  219 cttgcatatttatttatttataaaagtacaagtaaatttgtccctccaacaggtaccaaaccctaattggccggaaaacaaggcgattgacgaggggtcg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10618841 cttgcatatttatttatttataaaagtacaagtaaatttgtccctccaacaggtaccaaaccctaattggccggaaaacaaggcgattgacgaggggtcg 10618742  T
Q  319 tggactgatgttgagtactgtaagttgagggggaagtggtatcccgtgtcgaaaacggaggcggagaaggcggcgtgggagttttgtgagaaacacagcg 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10618741 tggactgatgttgagtactgtaagttgagggggaagtggtatcccgtgtcgaaaacggaggcggagaaggtggcgtgggagttttgtgagaaacacagcg 10618642  T
Q  419 gtgtggatgtggttgcagttcatccggggacttgtttggggccgttgcttcagaatcagatgaatgcaagttctgcggtgttgcagaggttgatgatggg 518  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10618641 gtgtggatgtggttgcagttcatccagggacttgtttggggccgttgcttcagaatcagatgaatgcaagttctgcggtgttgcagaggttgatgatggg 10618542  T
Q  519 ggagaaggatacacaggagtgttattggttgggtgctgttcatgttaaagatgttgctagagctcatgttttggtttacgagactccaactgctgctggt 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10618541 ggagaaggatacacaggagtgttattggttgggtgctgttcatgttaaagatgttgctagagctcatgttttggtttacgagactccaactgctgctggt 10618442  T
Q  619 agatatctttgtgttaatggtatctatcagttttctagttttgccaaaattgtctctgaattgtaccctgattaccctattcacaggtt 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10618441 agatatctttgtgttaatggtatctatcagttttctagttttgccaaaattgtctctgaattgtaccatgattaccctattcacaggtt 10618353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 44439249 - 44439324
Alignment:
Q  30 agaattgattctag-ttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    |||||||||||||  ||||||||| || || ||||||||||||||| ||||||||||||||||||||||| |||||    
T  44439249 agaattgattctaacttgaagctaaaatttggagcttttgattctaaaattgattttaacactcaaatttattgtt 44439324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 36307044 - 36307139
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||||||||||||  |||||||||| | | ||||||| ||||| ||| ||||| | | ||||||||||||| |||||||||||| || |||||||||    
T  36307044 ttttatataaatacatacaaacatcaattactttacgttcaactcacttttatccataatcaattttacataatcaattcactcaagatcaatttt 36307139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 168
Target Start/End: Complemental strand, 4894244 - 4894099
Alignment:
Q  32 aattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt---------tttatataaatgtataca 122  Q
    ||||||||| | ||||| ||||||||   ||||||||||||||||||||||| | | |||||||||| || ||         |||| || |||||||  |    
T  4894244 aattgattcaacttgaaactagaaatcgtagcttttgattctataattgattattatactcaaatttattattcaagtcacttttaaatgaatgtatcta 4894145  T
Q  123 aacataattcactttaccttcaattcatttttagctagaatcaatt 168  Q
    ||||||| ||||||||||||||| | | ||||||||||||||||||    
T  4894144 aacataaatcactttaccttcaacttaattttagctagaatcaatt 4894099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 11759859 - 11759770
Alignment:
Q  110 ataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    |||| |||||||||||| ||  || ||||||||||| ||| |||||   | |||||||||||||||||||||||||| ||| ||||||||    
T  11759859 ataagtgtatacaaacacaaaccaatttaccttcaactcacttttaatcaaaatcaattttacaaaatcaattcactcaaactcaatttt 11759770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 42774854 - 42774783
Alignment:
Q  112 aaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattca 184  Q
    |||||||| |||||||||  || ||||||||||| | ||||||||  ||||||||||||||||||||||||||    
T  42774854 aaatgtat-caaacataaaccattttaccttcaacttatttttagtcagaatcaattttacaaaatcaattca 42774783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 42982544 - 42982608
Alignment:
Q  34 ttgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    ||||||||| |||||||||||||||  |||||||||||| | |||||||||| |||| |||||||    
T  42982544 ttgattctacttgaagctagaaattgtagcttttgattccagaattgatttttacacacaaattt 42982608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 3476530 - 3476452
Alignment:
Q  19 attttgcctttagaattgattctag-ttgaagctagaaattagagcttttgattctataattgattttaacactcaaat 96  Q
    |||||||||  |||||||||||||  || |||||| ||||||||||||||||||||| |||| ||||| ||| ||||||    
T  3476530 attttgcctccagaattgattctaacttaaagctaaaaattagagcttttgattctagaatttatttttacattcaaat 3476452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 42740975 - 42741041
Alignment:
Q  32 aattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    ||||||||||| |||||||||  | ||  |||||||||||||| |||||||||| ||||||||||||    
T  42740975 aattgattctacttgaagctaagatttgtagcttttgattctagaattgatttttacactcaaattt 42741041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 33962053 - 33961996
Alignment:
Q  47 aagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    ||||| |||||| ||| |||||||||||||||||||||| | |||||||||| |||||    
T  33962053 aagcttgaaattggagtttttgattctataattgatttttagactcaaatttattgtt 33961996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 4007192 - 4007116
Alignment:
Q  121 caaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    ||||||||| | ||||| | ||||| ||| ||||| | | ||||||||||||||||||||| |||| ||||||||||    
T  4007192 caaacataaattacttttcattcaactcacttttatccataatcaattttacaaaatcaatccacttaaaatcaatt 4007116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 12037056 - 12037112
Alignment:
Q  29 tagaattgattctagttgaagctagaaattagagcttttgattctataattgatttt 85  Q
    |||||||||||||||||||| ||| || ||  |||||||||||||| ||||||||||    
T  12037056 tagaattgattctagttgaaactaaaatttgtagcttttgattctacaattgatttt 12037112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 5973654 - 5973619
Alignment:
Q  160 gaatcaattttacaaaatcaattcactaaaaatcaa 195  Q
    ||||||||||||||||||||||||| ||||||||||    
T  5973654 gaatcaattttacaaaatcaattcattaaaaatcaa 5973619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 12110918 - 12111001
Alignment:
Q  116 gtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    |||| ||||||||| ||||||||  ||||| ||| ||||| | | ||||||||| |||||||||||||  | ||||||||||||    
T  12110918 gtatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaatttt 12111001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 680296 - 680203
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaattt 198  Q
    ||||| || ||||||| |||||| ||  |||||||||||||| ||| ||| ||  ||| |||| |||||| |||||||||||| |||||||||||    
T  680296 ttttacatgaatgtatgcaaacacaaaacactttaccttcaactcaattt-agacagactcaactttacataatcaattcactcaaaatcaattt 680203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 3352074 - 3352140
Alignment:
Q  32 aattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    |||||||| || |||||| | | ||||  ||||||||||||||||||||||||| |||| |||||||    
T  3352074 aattgattttacttgaagttgggaattgcagcttttgattctataattgattttcacacacaaattt 3352140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 6767764 - 6767850
Alignment:
Q  114 atgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttta 200  Q
    ||||||| |||| ||| ||||||||| ||||| |||||||||   | ||||||||||||||||||| || | | ||||||| |||||    
T  6767764 atgtatataaacgtaaatcactttacattcaactcatttttaatcacaatcaattttacaaaatcagtttattcaaaatcattttta 6767850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 16488342 - 16488392
Alignment:
Q  48 agctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    ||||||||||| ||||| ||||||||| |||||||| ||||| ||||||||    
T  16488342 agctagaaattggagctgttgattctagaattgattataacaatcaaattt 16488392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 22535983 - 22536049
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgatttt 85  Q
    |||||||||||||||||||||||| |||||  ||||| ||  ||||||||||| || |||| |||||    
T  22535983 attttgcctttagaattgattctacttgaatttagaatttgaagcttttgattttagaattaatttt 22536049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 35 - 197
Target Start/End: Complemental strand, 35264495 - 35264324
Alignment:
Q  35 tgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttg---------tttttatataaatgtatacaaac 125  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| |||         |||||| || ||||||  |||||    
T  35264495 tgattctacttgaaactagaaattagagcttttgattctagaattgattttaacacttaaatttattgttcaagtcatttttacatgaatgtacccaaac 35264396  T
Q  126 ataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    |||| ||||||||| ||||| ||| |||| | || ||||||||||||| |||||||||||| ||||||||||    
T  35264395 ataactcactttactttcaactcacttttggttacaatcaattttacagaatcaattcactcaaaatcaatt 35264324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 35058346 - 35058423
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaat 96  Q
    |||||||||  ||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  35058346 attttgcctcaagaattgattctacttggagctagaaattcgagcttttgattctagaattgattttaacactcaaat 35058423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 37335134 - 37334949
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt---------tttat 109  Q
    |||||||||  |||||||||| || | |||| |||||||   |||||||||||||| |||||||||| |||||  ||||  |||||         |||||    
T  37335134 attttgcctcgagaattgattttactagaagttagaaatcgtagcttttgattctagaattgatttttacacttgaattcattgttcaactcatttttat 37335035  T
Q  110 ataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaa 195  Q
    || ||||||| || |||||| ||||||||||||||| ||| ||||||   |||||||||||| | |||||||||||| ||||||||    
T  37335034 atgaatgtattcagacataaatcactttaccttcaactcaattttagtcggaatcaattttatataatcaattcacttaaaatcaa 37334949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 50427184 - 50427240
Alignment:
Q  137 taccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatc 193  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  50427184 taccttcaactcatttttagctagaatcaattttacaaattcaattcacttaaaatc 50427240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 36302168 - 36302253
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    |||||||||| ||| ||||||||| ||||||||||| ||| ||| |||||||| || ||||||||||| |||| |||||| |||||    
T  36302168 attttgccttcagagttgattctatttgaagctagagattggagattttgattttagaattgattttagcacttaaatttattgtt 36302253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 44958706 - 44958621
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    |||||||||  ||| ||||||||| | || |||||||||| ||||||||||||||| || |||||||||||||||| ||| |||||    
T  44958706 attttgcctccagagttgattctactcgatgctagaaattggagcttttgattctagaaatgattttaacactcaactttattgtt 44958621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 40147950 - 40147878
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacact 91  Q
    |||||| ||| ||||||||||||| || ||||||||| || ||||||||||||||| ||||||||| ||||||    
T  40147950 attttgtcttcagaattgattctacttcaagctagaatttggagcttttgattctagaattgatttcaacact 40147878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 584799 - 584712
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaa 191  Q
    ||||| |||||||||| |||||| || ||  |||| |||||| | | ||||||||| |||||||||||||||||||||||||| ||||    
T  584799 ttttacataaatgtatccaaacagaaatccatttagcttcaacttaattttagctaaaatcaattttacaaaatcaattcactcaaaa 584712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 31766242 - 31766160
Alignment:
Q  115 tgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    ||||| ||||||||| |||||||| |||||| ||| ||||| | | ||| |||||||||||||||||||| | ||||||||||    
T  31766242 tgtatccaaacataaatcactttaacttcaactcacttttatccaaaattaattttacaaaatcaattcattcaaaatcaatt 31766160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 32112073 - 32112167
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaattt 198  Q
    ||||| ||||||  || ||||||||| | ||||| | ||||| ||||||||| | | ||||||||||||| |||||||||||| |||||||||||    
T  32112073 ttttacataaataaatccaaacataaattacttttcattcaactcatttttatccataatcaattttacataatcaattcactcaaaatcaattt 32112167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 168
Target Start/End: Original strand, 3776524 - 3776665
Alignment:
Q  36 gattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttg---------tttttatataaatgtatacaaaca 126  Q
    ||||||| ||||| |||||||||  ||||| |||||||| |||| ||||| ||||||||||||||||          ||||| || ||||||| ||| ||    
T  3776524 gattctacttgaatctagaaattgtagcttctgattctagaattaatttttacactcaaatttgttgctgaactcacttttacatcaatgtatccaagca 3776623  T
Q  127 taattcactttaccttcaattcatttttagctagaatcaatt 168  Q
    ||| ||||||||| ||||| ||| ||||||| ||||||||||    
T  3776624 taaatcactttacattcaactcaattttagccagaatcaatt 3776665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 42644302 - 42644379
Alignment:
Q  121 caaacataattcactttaccttcaattcatttttagctagaatcaatttt-acaaaatcaattcactaaaaatcaatt 197  Q
    ||||||||| ||||||||| ||||| ||| ||||| ||| |||||||||| | |||||||||||||| ||||||||||    
T  42644302 caaacataaatcactttacattcaactcacttttaactaaaatcaatttttataaaatcaattcactcaaaatcaatt 42644379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 51285580 - 51285641
Alignment:
Q  44 ttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgttt 105  Q
    ||||||||| |||| | |||||||||||||| ||||||||||  ||||||||||||||||||    
T  51285580 ttgaagctaaaaatcacagcttttgattctagaattgatttttgcactcaaatttgttgttt 51285641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 46853593 - 46853549
Alignment:
Q  60 gagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||    
T  46853593 gagcttttgattctagaattgattttaacactcaaatttattgtt 46853549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 30301099 - 30301013
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttga-ttctataattgattttaacactcaaatttgttgtt 104  Q
    |||||||||  | |||||| |||| ||||||||||||||| ||| |||| | ||||| ||||| ||||||||||||||||| |||||    
T  30301099 attttgcctccaaaattgactctatttgaagctagaaattggagttttttaattctagaattggttttaacactcaaatttattgtt 30301013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 52925617 - 52925551
Alignment:
Q  116 gtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaatt 182  Q
    |||| |||||||||  |||||||| ||||| ||| ||||||  ||||||||||||||||||||||||    
T  52925617 gtatccaaacataaaccactttactttcaactcaattttagtgagaatcaattttacaaaatcaatt 52925551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 1441404 - 1441331
Alignment:
Q  113 aatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcact 186  Q
    |||||||  ||||| || ||||||||| ||||| ||| ||||||  ||||||||||||||||||| ||||||||    
T  1441404 aatgtatctaaacacaaatcactttacgttcaactcacttttagacagaatcaattttacaaaattaattcact 1441331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 25577757 - 25577696
Alignment:
Q  121 caaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaatt 182  Q
    ||||||||| | |||||||||||||||||  |||| || |||||||||| ||||||||||||    
T  25577757 caaacataaataactttaccttcaattcaagtttatcttgaatcaatttcacaaaatcaatt 25577696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 30958145 - 30958209
Alignment:
Q  133 actttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    ||||||| ||||| |||  |||||| | |||||||||||||||||||||||| | ||||||||||    
T  30958145 actttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaatcaatt 30958209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 30973957 - 30974021
Alignment:
Q  133 actttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    ||||||| ||||| |||  |||||| | |||||||||||||||||||||||| | ||||||||||    
T  30973957 actttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaatcaatt 30974021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 42913164 - 42913228
Alignment:
Q  135 tttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||||| || |||||| |||||| |||||| ||||||| | |||||||||||| ||||||||||||    
T  42913164 tttacatttaattcacttttagttagaattaattttatacaatcaattcactcaaaatcaatttt 42913228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 49356336 - 49356304
Alignment:
Q  167 ttttacaaaatcaattcactaaaaatcaatttt 199  Q
    |||||||||||||||||||||||||||||||||    
T  49356336 ttttacaaaatcaattcactaaaaatcaatttt 49356304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 25620179 - 25620254
Alignment:
Q  123 aacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaattt 198  Q
    ||||||| ||||||||| |||| || || ||||  || |||||||||||||||||||||| ||| ||||| |||||    
T  25620179 aacataaatcactttactttcatttaatatttaattataatcaattttacaaaatcaatttactcaaaattaattt 25620254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 52364047 - 52364102
Alignment:
Q  30 agaattgattctagttgaagctagaaattagagcttttgattctataattgatttt 85  Q
    ||||||| ||||| |||||||||  | ||| |||||||||||||||||||||||||    
T  52364047 agaattgtttctacttgaagctatgatttatagcttttgattctataattgatttt 52364102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 7717421 - 7717367
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattct 73  Q
    |||||||||  ||||||||||||| |||||||||||||||  ||||| |||||||    
T  7717421 attttgcctccagaattgattctacttgaagctagaaattgtagcttctgattct 7717367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 23187865 - 23187915
Alignment:
Q  54 aaattagagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    ||||| |||||||| |||||| |||||| ||| ||||||||||||||||||    
T  23187865 aaattggagcttttaattctagaattgaattttacactcaaatttgttgtt 23187915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 24916581 - 24916639
Alignment:
Q  122 aaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaa 180  Q
    |||||||| ||| ||||| ||||| ||| |||||||  |||||||||||||||||||||    
T  24916581 aaacataaatcattttacattcaactcacttttagcctgaatcaattttacaaaatcaa 24916639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 25129545 - 25129451
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaattt 198  Q
    ||||| ||||||  || ||||||||| |||| |||| ||||| ||| ||||| |  ||||||||||||||| ||||||||| | || ||||||||    
T  25129545 ttttacataaatacatccaaacataaatcacgttacattcaactcacttttatcctgaatcaattttacaacatcaattcattcaagatcaattt 25129451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 25359663 - 25359589
Alignment:
Q  30 agaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    ||||||||||||| |||||| ||||| ||  || |||| ||||||||||||||||| |||| || |||| |||||    
T  25359663 agaattgattctacttgaagttagaatttgtagttttttattctataattgattttcacacacatatttattgtt 25359589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 27499453 - 27499383
Alignment:
Q  27 tttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatt 97  Q
    |||| |||||| ||| ||||||| ||||||||  ||||||| |||||| |||||||||||| ||| |||||    
T  27499453 tttaaaattgactcttgttgaagttagaaattgaagcttttaattctaaaattgattttaatacttaaatt 27499383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 41115462 - 41115392
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagctttt-gattctataattgattttaac 88  Q
    ||||||| | |||||||||||||| |||||||||||| ||  ||||||| | ||||| |||||||||||||    
T  41115462 attttgcttgtagaattgattctacttgaagctagaatttgtagcttttggcttctacaattgattttaac 41115392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 41591359 - 41591269
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatca 194  Q
    ||||| || ||||||| ||||||||| ||||||||  ||||| ||||||||||| |||| | ||||||   |||||||||| | |||||||    
T  41591359 ttttacatgaatgtatccaaacataaatcactttaaattcaactcatttttagcaagaacctattttattgaatcaattcatttaaaatca 41591269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 48089688 - 48089618
Alignment:
Q  112 aaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaatt 182  Q
    |||||||| ||| ||||| ||| ||||| ||||| ||| ||||| ||||||||||||||| | ||||||||    
T  48089688 aaatgtatccaatcataaatcattttacattcaactcacttttaactagaatcaattttaaagaatcaatt 48089618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 44958622 - 44958553
Alignment:
Q  130 ttcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    |||||||||| ||||| ||| ||||||| | |||||||||||||  ||||||||||| ||| || |||||    
T  44958622 ttcactttactttcaactcacttttagccaaaatcaattttacatgatcaattcactcaaagtcgatttt 44958553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 49158656 - 49158693
Alignment:
Q  161 aatcaattttacaaaatcaattcactaaaaatcaattt 198  Q
    |||||||||||||||||||||||| | |||||||||||    
T  49158656 aatcaattttacaaaatcaattcattcaaaatcaattt 49158693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 53567961 - 53568050
Alignment:
Q  110 ataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||||| |||| ||||||||| | ||||| | ||||| ||| |||||   | ||||||||||  |||||||||||||| ||||||||||||    
T  53567961 ataaaggtatccaaacataaattacttttcattcaactcacttttaatcaaaatcaattttgtaaaatcaattcactcaaaatcaatttt 53568050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 1485247 - 1485161
Alignment:
Q  18 aattttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||    
T  1485247 aattttgcctttagaattgattctacttgaatctagaaattggagcttttgattctagaattgattttaacactcaaatttattgtt 1485161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 1499979 - 1500074
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||||| |||||||||| ||||||||| ||| |||||  |||| ||  ||||||| | |||||||||||||||||||||||| | ||||||||||||    
T  1499979 ttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagccaaaatcaattttacaaaatcaattcagtcaaaatcaatttt 1500074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 2234500 - 2234579
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    |||||||||| | ||||||||| | ||||||||| ||| |  |||||||||||||| |||||||||||||||||||||||    
T  2234500 attttgccttcaaaattgattcaacttgaagctaaaaactgaagcttttgattctagaattgattttaacactcaaattt 2234579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 34620870 - 34621025
Alignment:
Q  18 aattttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgt---------tttta 108  Q
    ||||||||||   ||||||||||||  ||||||||||||| | ||||| |||||||| |||||||||| ||||| |||||| || |         |||||    
T  34620870 aattttgcctccggaattgattctacatgaagctagaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactcactttta 34620969  T
Q  109 tataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatc 164  Q
     |||||||||| ||||||||| ||||||||||||||| ||| || |||| ||||||    
T  34620970 cataaatgtatccaaacataaatcactttaccttcaactcaattctagccagaatc 34621025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 34748307 - 34748462
Alignment:
Q  18 aattttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgt---------tttta 108  Q
    ||||||||||   ||||||||||||  ||||||||||||| | ||||| |||||||| |||||||||| ||||| |||||| || |         |||||    
T  34748307 aattttgcctccggaattgattctacatgaagctagaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactcactttta 34748406  T
Q  109 tataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatc 164  Q
     |||||||||| ||||||||| ||||||||||||||| ||| || |||| ||||||    
T  34748407 cataaatgtatccaaacataaatcactttaccttcaactcaattctagccagaatc 34748462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 30926878 - 30926793
Alignment:
Q  20 ttttgcctttagaattgattctag-ttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    ||||| ||||||||| |||||||  ||||||||||||||| ||| |||| |||||| |||||||||| |||||||||||| |||||    
T  30926878 ttttggctttagaatggattctaacttgaagctagaaattggagttttttattctagaattgatttttacactcaaatttattgtt 30926793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 44 - 199
Target Start/End: Original strand, 9505780 - 9505944
Alignment:
Q  44 ttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgt---------ttttatataaatgtatacaaacataattcac 134  Q
    |||||| |||||||| |||||||||||||||| ||||||||| | |||||||||| ||||         ||||| || ||| ||||  ||||||  ||||    
T  9505780 ttgaagatagaaattggagcttttgattctatgattgatttttaaactcaaatttattgttcaacacacttttacatgaatatataataacatatatcac 9505879  T
Q  135 tttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||| ||||||| ||| ||||||| | ||| || |||||| |||||||||| | ||||||||||||    
T  9505880 tttgccttcaactcaattttagccaaaataaactttacagaatcaattcattcaaaatcaatttt 9505944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 34898691 - 34898766
Alignment:
Q  30 agaattgattctagttgaagctagaaattagag-cttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    ||||| ||||||| |||||||||||||||||||  |||| |||||| ||||||||||||||||| ||||| |||||    
T  34898691 agaatcgattctacttgaagctagaaattagagtttttttattctagaattgattttaacactcgaatttattgtt 34898766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 7953079 - 7953144
Alignment:
Q  121 caaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcact 186  Q
    ||||||||| ||||||||||||||| ||| |||| || |||||||||||| || ||||||||||||    
T  7953079 caaacataaatcactttaccttcaactcaattttggccagaatcaatttttcataatcaattcact 7953144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 46285 - 46201
Alignment:
Q  113 aatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    ||||||| |||||| || | ||||||  | ||| ||| |||||| |||||||||||||||| |||||||||||| ||||||||||    
T  46285 aatgtatccaaacacaaataactttaattgcaactcacttttagttagaatcaattttacagaatcaattcactcaaaatcaatt 46201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 765382 - 765298
Alignment:
Q  113 aatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    |||||||  ||||| || ||||||||| ||||| | | |||||| |||||||||||||||| ||||| |||||| ||||||||||    
T  765382 aatgtatggaaacacaaatcactttactttcaacttacttttagttagaatcaattttacacaatcatttcactcaaaatcaatt 765298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 10874507 - 10874555
Alignment:
Q  47 aagctagaaattagagcttttgattctataattgattttaacactcaaa 95  Q
    |||||||||||||||||||||||||||| |||||||||| ||| |||||    
T  10874507 aagctagaaattagagcttttgattctagaattgatttttacattcaaa 10874555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 3436871 - 3436796
Alignment:
Q  122 aaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    |||||||| ||||| |||| | ||||| ||||||| |  ||||||||||| |||||||| ||||||||||||||||    
T  3436871 aaacataaatcactataccgtaaattcttttttagttgaaatcaattttataaaatcaactcactaaaaatcaatt 3436796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 31305922 - 31305868
Alignment:
Q  44 ttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    ||||||||| ||||| ||||||||||||||| |||||||||  ||||||||||||    
T  31305922 ttgaagctaaaaattggagcttttgattctagaattgatttatacactcaaattt 31305868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 882774 - 882829
Alignment:
Q  113 aatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaatt 168  Q
    ||||||| ||||||||| ||| ||||||||||| ||| ||||| ||||||||||||    
T  882774 aatgtatccaaacataaatcattttaccttcaactcaattttaactagaatcaatt 882829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 3525004 - 3525099
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||||| |||||||||| |||| ||||  || ||| | ||||| ||| ||||||| | ||||||||||||| |||||||||| | ||||| ||||||    
T  3525004 ttttacataaatgtattcaaatataaaccagtttgcattcaactcacttttagccacaatcaattttacataatcaattcattcaaaattaatttt 3525099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 22692639 - 22692714
Alignment:
Q  107 tatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaatt 182  Q
    |||||||||| || ||| ||||| ||||||||  || |||||| |||| || ||| ||||||||||||||||||||    
T  22692639 tatataaatgcatgcaagcataaatcactttaaatttaattcacttttcgcaagattcaattttacaaaatcaatt 22692714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 852517 - 852603
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgttt 105  Q
    |||||||||  | ||||||||| | |||||||||||||||  || || |||||||| |||||||||| |||| ||||| | ||||||    
T  852517 attttgcctccataattgattcaacttgaagctagaaattgtaggttctgattctagaattgatttttacacccaaatgtattgttt 852603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 20871627 - 20871673
Alignment:
Q  151 ttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    ||||| ||| ||||||||||||| |||||||||| ||||||||||||    
T  20871627 ttttatctaaaatcaattttacacaatcaattcaataaaaatcaatt 20871673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 5724730 - 5724653
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaat 96  Q
    |||||||||  | ||||||||||| |||||||||| | ||  | ||||| ||||||||||||||||| |||| |||||    
T  5724730 attttgcctccaaaattgattctacttgaagctaggatttgtaactttttattctataattgatttttacacacaaat 5724653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 34027475 - 34027438
Alignment:
Q  61 agcttttgattctataattgattttaacactcaaattt 98  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  34027475 agcttttgattctagaattgatttttacactcaaattt 34027438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 41788312 - 41788439
Alignment:
Q  30 agaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgt---------ttttatataaatgtata 120  Q
    ||||||||||||| || ||||||||||||  | ||||||| ||||||||||||||||||||||||||||| |||         |||||||| ||||||||    
T  41788312 agaattgattctacttaaagctagaaattgaaacttttgagtctataattgattttaacactcaaatttgctgttcaactcacttttatattaatgtata 41788411  T
Q  121 caaacataattcactttaccttcaattc 148  Q
    ||||||||| ||||||||||||||||||    
T  41788412 caaacataaatcactttaccttcaattc 41788439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 27571858 - 27571922
Alignment:
Q  30 agaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaa 94  Q
    ||||||||||||| |||||| |||||||| ||||||||||||||| |||||||||||||||||||    
T  27571858 agaattgattctacttgaagttagaaattggagcttttgattctagaattgattttaacactcaa 27571922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 5489947 - 5489874
Alignment:
Q  18 aattttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacact 91  Q
    ||||||||||  | ||||||||||| |||| |||||||||| |||||||||||| |||||||||||||||||||    
T  5489947 aattttgcctccaaaattgattctacttgatgctagaaattggagcttttgattatataattgattttaacact 5489874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 40491657 - 40491750
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    ||||| || ||||||| |||| |||| ||||||||||||||| ||| ||||||  | ||||||||||||| |||||||||||| ||||||||||    
T  40491657 ttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaatt 40491750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 40795995 - 40795917
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaatt 182  Q
    ||||| || ||||||| ||| |||||  |||||||||||||||||||||||| |||  |||||||||||||||||||||    
T  40795995 ttttacatgaatgtatccaatcataaaccactttaccttcaattcatttttacctaacatcaattttacaaaatcaatt 40795917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 30182383 - 30182310
Alignment:
Q  32 aattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgttt 105  Q
    ||||||||||| ||||||||| |||||  |||||||||||||| |||| ||||| |||||||||||| ||||||    
T  30182383 aattgattctacttgaagctaaaaattgtagcttttgattctagaattaatttttacactcaaatttattgttt 30182310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 38123756 - 38123687
Alignment:
Q  29 tagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    |||||||||||||| |||||||||||||||  ||||| | |||||| |||||||||| ||||||||||||    
T  38123756 tagaattgattctacttgaagctagaaattgtagcttctaattctagaattgatttttacactcaaattt 38123687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 39734691 - 39734639
Alignment:
Q  131 tcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattc 183  Q
    |||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  39734691 tcactttaccttaaactcagttttagctagaatcaattttacaaaatcaattc 39734639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 45005005 - 45005084
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    |||||||||| ||||||||||||| ||||||||| ||||| |||  ||||||| || ||||||| ||| |||||||||||    
T  45005005 attttgccttcagaattgattctacttgaagctaaaaattggaggctttgattatagaattgatcttagcactcaaattt 45005084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 42481900 - 42481803
Alignment:
Q  100 ttgtttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    ||||||||| ||||||| || | ||||||| ||| ||||| ||||| ||| ||||    ||||||||||||||| |||||||||||| ||||||||||    
T  42481900 ttgtttttagataaatgcatccgaacataaatcattttacattcaactcactttttttcagaatcaattttacataatcaattcacttaaaatcaatt 42481803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 35105254 - 35105330
Alignment:
Q  121 caaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    ||||||||| ||||||| | |||||| || ||| | | ||||||||||||| |||||||||||||| ||||||||||    
T  35105254 caaacataaatcacttttcattcaatccactttcatccagaatcaattttaaaaaatcaattcactcaaaatcaatt 35105330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 29829366 - 29829311
Alignment:
Q  113 aatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaatt 168  Q
    ||||||| ||||||||| ||||||||| ||||| ||||||||||| ||||||||||    
T  29829366 aatgtatccaaacataaatcactttacattcaactcatttttagccagaatcaatt 29829311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 48158991 - 48158913
Alignment:
Q  120 acaaacataattcactttaccttcaattca-tttttagctagaatcaattttacaaaatcaattcactaaaaatcaattt 198  Q
    ||||||||||| || ||||||||||| ||| ||||||| | ||||||||| ||||||||||||||||| | |||||||||    
T  48158991 acaaacataat-cattttaccttcaactcactttttagtttgaatcaattatacaaaatcaattcactcacaatcaattt 48158913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 15050303 - 15050436
Alignment:
Q  44 ttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt---------tttatataaatgtatacaaacataattcac 134  Q
    |||||||||||||||||||||||  |||||| |||||||||| ||| | |||| | | |||         |||||  |||| ||| ||||||||| | ||    
T  15050303 ttgaagctagaaattagagctttccattctaaaattgatttttacaatgaaatgtttggttcaacccacttttatggaaatatatccaaacataaattac 15050402  T
Q  135 tttaccttcaattcatttttagctagaatcaatt 168  Q
    |||||| | |||||||||||||||||||||||||    
T  15050403 tttaccctaaattcatttttagctagaatcaatt 15050436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 597918 - 597862
Alignment:
Q  135 tttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaa 191  Q
    ||||||||||| ||| ||||||| | ||||||||||||| | |||||||||||||||    
T  597918 tttaccttcaactcagttttagccaaaatcaattttacatactcaattcactaaaaa 597862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 1410946 - 1411026
Alignment:
Q  18 aattttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    ||||||||||||||||||||||||| |||||| || || ||  || ||||| || || |||||||||| |||| |||||||    
T  1410946 aattttgcctttagaattgattctatttgaagttataatttgtagattttgtttttagaattgattttcacacgcaaattt 1411026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 598034 - 597961
Alignment:
Q  30 agaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    ||||||||||||| ||||||||| |||||  |||||| |||||||||||||||| |  |||| |||||| |||||    
T  598034 agaattgattctacttgaagcta-aaattgtagctttcgattctataattgattcttgcactaaaatttattgtt 597961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 28725138 - 28725088
Alignment:
Q  33 attgattctagttgaagctagaaattagagcttttgattctataattgatt 83  Q
    ||||||| || |||||||||||| ||  |||||||||||||||||||||||    
T  28725138 attgattatacttgaagctagaatttgtagcttttgattctataattgatt 28725088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 5489857 - 5489781
Alignment:
Q  122 aaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    |||||||| | ||||||| ||||| ||||||||| |  |||||||||| ||| |||||||||||| |||| |||||||    
T  5489857 aaacataaataactttacattcaactcatttttaaccggaatcaattt-acacaatcaattcacttaaaaccaatttt 5489781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 35222074 - 35222115
Alignment:
Q  113 aatgtatacaaacataattcactttaccttcaattcattttt 154  Q
    ||||||||||||||||| ||||||||||||||| | ||||||    
T  35222074 aatgtatacaaacataaatcactttaccttcaactaattttt 35222115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 41386909 - 41386836
Alignment:
Q  25 cctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    |||| ||||||||||||| |||||||||| | ||  ||||||| |||||| ||||||| || |||| |||||||    
T  41386909 ccttcagaattgattctacttgaagctaggatttgtagcttttaattctagaattgatatttacacacaaattt 41386836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 44856784 - 44856719
Alignment:
Q  117 tatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaatt 182  Q
    ||||||||||||| || |||||| ||||| ||| ||||||  |||||||| ||||| |||||||||    
T  44856784 tatacaaacataaatcgctttacattcaactcacttttaggcagaatcaactttaccaaatcaatt 44856719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 10325039 - 10324953
Alignment:
Q  18 aattttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    |||||||||| ||||||||| |||| |||||| ||||||||  ||||||||||||||||||||||||| |||||||||||| |||||    
T  10325039 aattttgcctctagaattgagtctacttgaagatagaaattgtagcttttgattctataattgatttttacactcaaatttattgtt 10324953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 36 - 197
Target Start/End: Original strand, 3515820 - 3515979
Alignment:
Q  36 gattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtttttatataaatgtatacaaacataattcact 135  Q
    ||||||| |||||||||||||||  ||||||| |||||| |||||||||| ||||||||| || |  ||   |  ||||||||| |||||| || |||||    
T  3515820 gattctacttgaagctagaaattgtagcttttcattctagaattgatttttacactcaaaattatcattc--aactaaatgtatccaaacacaaatcact 3515917  T
Q  136 ttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    | |||||||| ||| ||||  | ||||||||||||||| |||||||||||| |||| |||||    
T  3515918 tcaccttcaactcaattttcaccagaatcaattttacataatcaattcactcaaaaccaatt 3515979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 20026251 - 20026179
Alignment:
Q  32 aattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    ||||||||||| |||||||||||||||  ||||||| | |||| ||||||||| ||||||||||||| |||||    
T  20026251 aattgattctacttgaagctagaaattcaagcttttaactctagaattgatttgaacactcaaatttattgtt 20026179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 33693031 - 33693172
Alignment:
Q  44 ttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtttttatataaatgtatacaaacataattcactttaccttc 143  Q
    |||||||||||||||  ||||||||||||||||||||||||| ||||||||||           | || ||||||| ||||||||| ||||||||| |||    
T  33693031 ttgaagctagaaattgtagcttttgattctataattgatttttacactcaaatg----------acatgaatgtatccaaacataaatcactttacgttc 33693120  T
Q  144 aattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaa 195  Q
    || ||  ||||| |  ||| |||||||| | |||||||||||| ||||||||    
T  33693121 aactcgcttttaaccggaaacaattttatagaatcaattcacttaaaatcaa 33693172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 199
Target Start/End: Complemental strand, 11817323 - 11817228
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||||| || ||||||| |||| | || ||| |||| |||||| ||  |||||| ||||||||||||||||||||||||||||| ||| ||||||||    
T  11817323 ttttacattaatgtattcaaataaaaatcattttatcttcaactcgcttttagttagaatcaattttacaaaatcaattcactcaaactcaatttt 11817228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 28083975 - 28083909
Alignment:
Q  32 aattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    ||||||||||| |||||||||||| ||  ||||||||||||||||||| ||||| |||| |||||||    
T  28083975 aattgattctacttgaagctagaatttgtagcttttgattctataattaatttttacacacaaattt 28083909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 47892478 - 47892416
Alignment:
Q  29 tagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacact 91  Q
    ||||| |||||||| || ||||||||||||  |||||||||||||| ||||||||||||||||    
T  47892478 tagaactgattctacttaaagctagaaattgaagcttttgattctagaattgattttaacact 47892416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 13344837 - 13344913
Alignment:
Q  121 caaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    ||||||||| ||||||||| ||||| ||| ||||| | | |||||||| ||||||||||||||| | ||||||||||    
T  13344837 caaacataaatcactttacgttcaactcacttttaaccaaaatcaattctacaaaatcaattcaatcaaaatcaatt 13344913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 6021789 - 6021864
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaa 94  Q
    ||||||||| |||||| ||||||| |||||||||| |  |  |||||||||||||||||| |||||| ||||||||    
T  6021789 attttgcctctagaatcgattctacttgaagctaggatatgtagcttttgattctataatagatttttacactcaa 6021864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 28287426 - 28287351
Alignment:
Q  29 tagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    |||||||| ||||| ||||||| || | ||  ||||||||||| || ||||||||||||||||||||||| |||||    
T  28287426 tagaattggttctacttgaagcaaggatttgtagcttttgattttagaattgattttaacactcaaatttattgtt 28287351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 22548248 - 22548210
Alignment:
Q  161 aatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  22548248 aatcaattttacaaaatcaattcacttaaaatcaatttt 22548210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 47899387 - 47899425
Alignment:
Q  159 agaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  47899387 agaatcaattttacaaaatcaattcactcaaaatcaatt 47899425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 7524192 - 7524285
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    ||||| |||||||| | |||||| || |||||||||||| |  ||| |||||| |||||||||||||| | ||||| |||||  ||||||||||    
T  7524192 ttttacataaatgtgtccaaacacaaatcactttaccttgagctcacttttagttagaatcaattttatagaatcagttcacccaaaatcaatt 7524285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 11049245 - 11049314
Alignment:
Q  29 tagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    |||||| ||||||| |||||||||| | ||  |||||||||||||| |||||||||| |||| |||||||    
T  11049245 tagaatcgattctacttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaattt 11049314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 15515075 - 15514998
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaat 181  Q
    ||||| || ||| ||| ||| ||||| || |||||||||||| ||| ||||||||||| ||||||| |||||||||||    
T  15515075 ttttacatgaatttatccaatcataaatcgctttaccttcaactcacttttagctagactcaatttcacaaaatcaat 15514998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 29759632 - 29759677
Alignment:
Q  54 aaattagagcttttgattctataattgattttaacactcaaatttg 99  Q
    ||||| |||||| ||||||||||||||||||| |||||||||||||    
T  29759632 aaattggagcttctgattctataattgatttttacactcaaatttg 29759677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 48549099 - 48549046
Alignment:
Q  32 aattgattctagttgaagctagaaattagagcttttgattctataattgatttt 85  Q
    ||||||||||| |||||||||||||||  ||||| |||||||| ||||||||||    
T  48549099 aattgattctacttgaagctagaaattgtagcttctgattctagaattgatttt 48549046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 24587905 - 24587976
Alignment:
Q  30 agaattgattctagttgaagct-agaaattagagcttttgattct--ataattgattttaacactcaaattt 98  Q
    |||| |||||||| |||||| | ||| ||| ||||||||||||||  |||||||||||||||||||||||||    
T  24587905 agaactgattctacttgaagtttagatattggagcttttgattctctataattgattttaacactcaaattt 24587976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 38512453 - 38512493
Alignment:
Q  159 agaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  38512453 agaattaattttacaaaatcaattcacttaaaatcaatttt 38512493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 4347033 - 4347100
Alignment:
Q  116 gtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattc 183  Q
    |||| ||||||||| ||||||||| ||||| ||| ||||| | | |||||||| ||||||||||||||    
T  4347033 gtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctacaaaatcaattc 4347100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 28465002 - 28464923
Alignment:
Q  103 tttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaatt 182  Q
    |||||| ||||||||| |||||||||| |||  |||| ||||| ||  |||||| ||||||||| ||| |||||||||||    
T  28465002 tttttacataaatgtacacaaacataaatcatgttacattcaactcgcttttagatagaatcaaattttcaaaatcaatt 28464923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 191
Target Start/End: Original strand, 35961447 - 35961534
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaa 191  Q
    ||||| || |||||||| |||||||| ||| ||||||||||| ||| |||||||   |||| |||||||| |||||||| ||| ||||    
T  35961447 ttttacatgaatgtatagaaacataaatcattttaccttcaactcacttttagccgtaatctattttacagaatcaatttactcaaaa 35961534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 49537195 - 49537246
Alignment:
Q  151 ttttagctagaatcaattttacaaaatcaattcactaaaaatcaattttaaa 202  Q
    |||||||||||| ||| ||||||||||||||||| | ||| |||||||||||    
T  49537195 ttttagctagaaacaactttacaaaatcaattcattcaaagtcaattttaaa 49537246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 213594 - 213552
Alignment:
Q  62 gcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    ||||||||||||| |||||||||| | ||||||||||||||||    
T  213594 gcttttgattctagaattgatttttaaactcaaatttgttgtt 213552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 6574175 - 6574245
Alignment:
Q  29 tagaattgattctag-ttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    ||||||||||||||  || |||||| |||||||||||||||||| || |||| ||||| | ||||||||||    
T  6574175 tagaattgattctaactttaagctaaaaattagagcttttgattgtagaattaattttcagactcaaattt 6574245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 7790735 - 7790657
Alignment:
Q  26 ctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    ||||||||||||||||| |||||| ||  | ||  || ||| |||||||||||||||||| |||| ||||||| |||||    
T  7790735 ctttagaattgattctacttgaagttatgatttgtagatttagattctataattgatttttacacacaaatttattgtt 7790657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 29964085 - 29964151
Alignment:
Q  20 ttttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgatttta 86  Q
    |||| |||||| ||||||||||| ||||||||| ||||||||| | || |||||| |||| ||||||    
T  29964085 tttttcctttataattgattctacttgaagctataaattagagttattaattctaaaatttatttta 29964151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 34387780 - 34387714
Alignment:
Q  32 aattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    |||||||| || |||||| | | ||||  ||||||||||||||||||||||||| |||| |||||||    
T  34387780 aattgattttacttgaagttgggaattgcagcttttgattctataattgattttcacacacaaattt 34387714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 17284125 - 17284166
Alignment:
Q  63 cttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    |||||||||||| |||||||||| |||||||||||| |||||    
T  17284125 cttttgattctaaaattgatttttacactcaaatttattgtt 17284166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 26382761 - 26382834
Alignment:
Q  103 tttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaa 176  Q
    |||||||||||||||||  |||||||| ||| ||||| ||  |||||||||||  || ||||||||||| ||||    
T  26382761 tttttatataaatgtatttaaacataaatcagtttacattttattcatttttaattataatcaattttataaaa 26382834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 32370037 - 32369944
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    ||||| || ||||||| |||||| || ||||||||   ||||| |||| ||||  | |||||||| |||| |||||||||||| ||||||||||    
T  32370037 ttttacatgaatgtatccaaacacaaatcactttataatcaatccattattagtcaaaatcaattctacacaatcaattcactcaaaatcaatt 32369944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 33843987 - 33844047
Alignment:
Q  44 ttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||    
T  33843987 ttgaagctagaaattggagcttttgattctaaaattgattttaacactcaaatttattgtt 33844047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 43868215 - 43868310
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||||| |||||||||| |||| | || ||||||||| ||||| | | ||||| ||||||| |||||||||||||||||||| | ||||||||||||    
T  43868215 ttttacataaatgtatccaaagacaaatcactttactttcaacttacttttaactagaattaattttacaaaatcaattcattcaaaatcaatttt 43868310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 55927870 - 55927696
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgt---------ttttat 109  Q
    |||||||||| ||||||||||| | |||| |||| |||||  ||||| |||||||| |||||||  | |||||||||||| ||||         |||||     
T  55927870 attttgccttcagaattgattccacttgaggctaaaaattgtagcttctgattctagaattgatcgtcacactcaaatttattgttcaagtcacttttac 55927771  T
Q  110 ataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattca 184  Q
    || ||||||| ||||||||| |||| ||| || ||| ||| ||||| || ||||||||||||| |||||||||||    
T  55927770 atgaatgtatccaaacataaatcacattaactccaactcaattttaactggaatcaattttacgaaatcaattca 55927696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 37439155 - 37439215
Alignment:
Q  44 ttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    |||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||| |||||    
T  37439155 ttgaagctagaaattatagcttttaattctataattgatttttacactcaattttattgtt 37439215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 2635148 - 2635227
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    |||||||||  |||||||||| |  ||||||||||| ||| |||||||||| |||| |||||||||||| ||||||||||    
T  2635148 attttgcctccagaattgattatgcttgaagctagagattggagcttttgagtctagaattgattttaagactcaaattt 2635227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 32818470 - 32818391
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    |||||||||  ||||||||||||| |||||||||||| ||  |||||||||||||| ||||||||||  ||| |||||||    
T  32818470 attttgcctccagaattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaattt 32818391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 38740369 - 38740287
Alignment:
Q  115 tgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    ||||| ||||||||| |||||| | |||||| ||| ||||| | | |||||||||||||||||||||||| | ||||||||||    
T  38740369 tgtatccaaacataaatcacttcaacttcaactcacttttatccaaaatcaattttacaaaatcaattcattcaaaatcaatt 38740287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 8330126 - 8330167
Alignment:
Q  44 ttgaagctagaaattagagcttttgattctataattgatttt 85  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  8330126 ttgaagctagaaattggagcttttgattctataattgatttt 8330167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 2206431 - 2206364
Alignment:
Q  32 aattgattctag-ttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    |||||||||||| ||||||||| ||||| |||||||||||||||  |||||||||  |||||||||||    
T  2206431 aattgattctagcttgaagctaaaaattggagcttttgattctaggattgatttttgcactcaaattt 2206364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 4243406 - 4243457
Alignment:
Q  53 gaaattagagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    |||||| ||||||||||||||| |||||||||| |||||||||||| |||||    
T  4243406 gaaattggagcttttgattctagaattgatttttacactcaaatttattgtt 4243457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 22250211 - 22250398
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgt---------ttttat 109  Q
    ||||||| | ||| |||| ||||| ||||||| |||||||  |||||||||||||  ||||| |||||| |||||||||| ||||         |||||     
T  22250211 attttgcatctaggattggttctacttgaagcaagaaattgaagcttttgattctgaaattgcttttaatactcaaatttattgttcgattcacttttac 22250310  T
Q  110 ataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    || ||||||| ||||  ||| |||||| || ||||| ||  ||||||  | ||||||||||||| ||||||||| || ||||||||||    
T  22250311 atgaatgtatccaaatgtaaatcacttcacattcaactcgcttttagtcataatcaattttacagaatcaattccctcaaaatcaatt 22250398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 20911896 - 20911810
Alignment:
Q  113 aatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||||||| ||||||||| | | ||| ||||||| |||  ||| || | ||||||||||||| |||||||||||| ||||||||||||    
T  20911896 aatgtattcaaacataaattattttgccttcaactcaacttttgccataatcaattttacataatcaattcactcaaaatcaatttt 20911810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 33843702 - 33843756
Alignment:
Q  53 gaaattagagcttttgattctataattgattttaacactcaaatttgttgttttt 107  Q
    |||||| |||||||| || ||| ||||||||||||||||||||||| ||||||||    
T  33843702 gaaattggagctttttatcctaaaattgattttaacactcaaatttattgttttt 33843756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 1048716 - 1048781
Alignment:
Q  33 attgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    |||||||||| || ||| ||||| ||| ||||||| ||||||||||||||| | ||||||||||||    
T  1048716 attgattctacttaaagttagaatttatagcttttaattctataattgattcttacactcaaattt 1048781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 10185204 - 10185265
Alignment:
Q  44 ttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgttt 105  Q
    |||||| ||||||||  |||||||||||||| ||||||| || |||||||||||| ||||||    
T  10185204 ttgaaggtagaaattgaagcttttgattctaaaattgatctttacactcaaatttattgttt 10185265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 24364167 - 24364103
Alignment:
Q  135 tttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||||| ||||| ||| ||||||  ||||||||||||||| |||||||||| | ||||||||||||    
T  24364167 tttacattcaaatcacttttagtgagaatcaattttacataatcaattcattcaaaatcaatttt 24364103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 30357504 - 30357576
Alignment:
Q  26 ctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    ||||||||||||||||| ||||||||   | ||  ||||||||||| ||||||||||||| |||| |||||||    
T  30357504 ctttagaattgattctacttgaagctgtgatttgtagcttttgattatataattgatttttacacacaaattt 30357576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 48575494 - 48575558
Alignment:
Q  135 tttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||||| ||||| ||||||||| | | |||||||||||||||||||||||| | ||||| ||||||    
T  48575494 tttacattcaactcatttttatcaaaaatcaattttacaaaatcaattcattcaaaattaatttt 48575558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 5835778 - 5835853
Alignment:
Q  124 acataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    |||||| ||||||| | ||||||||| |||||   | |||||||| ||||||||||||||| | ||||||||||||    
T  5835778 acataaatcacttttcattcaattcagttttaatcaaaatcaattctacaaaatcaattcaatcaaaatcaatttt 5835853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 17898127 - 17898057
Alignment:
Q  111 taaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaatt 182  Q
    ||||| ||| ||||||||| ||||||||| ||||| ||| ||| ||| |||||||||| |||||||||||||    
T  17898127 taaatatatccaaacataaatcactttacattcaactcactttcagc-agaatcaattatacaaaatcaatt 17898057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 18597035 - 18597110
Alignment:
Q  30 agaattgattctag-ttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt 104  Q
    |||||||||||||  ||||||||| || ||  | ||||||||||||||||||||||||||| ||||| || |||||    
T  18597035 agaattgattctaacttgaagctataatttgaaccttttgattctataattgattttaacattcaaagttattgtt 18597110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 20712664 - 20712710
Alignment:
Q  47 aagctagaaattagagcttttgattctataattgattttaacactcaa 94  Q
    |||||||||||| |||||||| ||||||||||||||||| ||||||||    
T  20712664 aagctagaaattggagctttt-attctataattgatttttacactcaa 20712710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 1023907 - 1023849
Alignment:
Q  121 caaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatca 179  Q
    |||||| || ||||||||||||||| ||| ||||||||| ||||| ||||||| |||||    
T  1023907 caaacaaaaatcactttaccttcaactcacttttagctaaaatcatttttacagaatca 1023849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 2206498 - 2206580
Alignment:
Q  15 atcaattttgcctttagaattgattctag-ttgaagctagaaattagagcttttgattctataattgattttaacactcaaat 96  Q
    |||||||||| ||  | |||||||||||  ||||||||| | |||  |||||||||||||||||||| |||| ||||||||||    
T  2206498 atcaattttggctccataattgattctaacttgaagctaaacattgtagcttttgattctataattgttttttacactcaaat 2206580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 2206850 - 2206900
Alignment:
Q  48 agctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    ||||| ||||| |||||||||||| || |||||| ||||||||||||||||    
T  2206850 agctaaaaattggagcttttgattttagaattgactttaacactcaaattt 2206900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 9064229 - 9064291
Alignment:
Q  32 aattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaa 94  Q
    ||||||||||| ||||| |||||| ||  || ||||||||||| |||||||||| ||||||||    
T  9064229 aattgattctacttgaaactagaatttgtagtttttgattctagaattgattttcacactcaa 9064291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 35122375 - 35122301
Alignment:
Q  117 tatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaa 191  Q
    |||| |||||||| | ||| ||||||||| ||| |||||||||||| |||||||||  ||| | |||||||||||    
T  35122375 tatataaacataaataactataccttcaactcaattttagctagaaccaattttacttaattagttcactaaaaa 35122301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 51093243 - 51093309
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgatttt 85  Q
    ||||||||| || |||||||||||  ||||||||||| || |||||||||  |||| ||||||||||    
T  51093243 attttgcctctataattgattctaactgaagctagaatttggagcttttgcctctacaattgatttt 51093309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 2206622 - 2206683
Alignment:
Q  121 caaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaatt 182  Q
    |||| |||| |||||| |||||||| ||| |||| |  ||||||||||||||||||||||||    
T  2206622 caaaaataaatcacttcaccttcaactcaattttcgtcagaatcaattttacaaaatcaatt 2206683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 25405729 - 25405766
Alignment:
Q  164 caattttacaaaatcaattcactaaaaatcaattttaa 201  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  25405729 caattttacataatcaattcactcaaaatcaattttaa 25405766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 50945463 - 50945390
Alignment:
Q  122 aaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaa 195  Q
    |||||||| ||||||||| || || |||  |||| |  |||||||||||| |||||||||||||| ||||||||    
T  50945463 aaacataaatcactttacatttaactcaaatttatccggaatcaattttataaaatcaattcactcaaaatcaa 50945390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 30 - 180
Target Start/End: Complemental strand, 14202 - 14044
Alignment:
Q  30 agaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgtt---------tttatataaatgtata 120  Q
    ||||||||||||| |||||||||| |||   ||||| |||||||| |||||||||| |||||||||||| || ||         || | || |||||||     
T  14202 agaattgattctacttgaagctagcaatct-agcttatgattctagaattgatttttacactcaaatttatttttcaactcactttcacatgaatgtatc 14104  T
Q  121 caaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaa 180  Q
    ||||||||| ||||||||||||||| ||| || |||| ||||||||||||||||||||||    
T  14103 caaacataaatcactttaccttcaactcaattgtagcaagaatcaattttacaaaatcaa 14044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 14299416 - 14299498
Alignment:
Q  115 tgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    ||||| |||||| || ||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||| ||||| ||||    
T  14299416 tgtattcaaacacaaatcactttaccttcaactcacttttatctagaatcaattttacacaatcaattcactcaaaataaatt 14299498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 24306171 - 24306110
Alignment:
Q  44 ttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgttt 105  Q
    |||||| ||||||||  | ||||||||||||||||||||||| |||||||||||| ||||||    
T  24306171 ttgaagttagaaattgtaacttttgattctataattgatttttacactcaaatttattgttt 24306110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 24367145 - 24367206
Alignment:
Q  44 ttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgttt 105  Q
    |||||| ||||||||  | ||||||||||||||||||||||| |||||||||||| ||||||    
T  24367145 ttgaagttagaaattgtaacttttgattctataattgatttttacactcaaatttattgttt 24367206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 3738201 - 3738142
Alignment:
Q  26 ctttagaattgattctagttgaagctagaaattagagcttttgattctataattgatttt 85  Q
    ||||| |||||||||||||||||| ||||| ||  || ||||||||||||||||||||||    
T  3738201 ctttaaaattgattctagttgaagttagaagttgtagtttttgattctataattgatttt 3738142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 34250447 - 34250380
Alignment:
Q  23 tgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacac 90  Q
    ||||| |||||||||||||| |||| ||||||||||  |||||||||||||| ||||| |||| ||||    
T  34250447 tgcctctagaattgattctacttgatgctagaaattgtagcttttgattctacaattgtttttcacac 34250380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 42858093 - 42858172
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    |||||| || ||||||||||| || |||||| ||| | || |||||||| ||||||||||||||||| |||| |||||||    
T  42858093 attttgactctagaattgattttacttgaagttaggatttggagcttttaattctataattgattttcacacacaaattt 42858172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 5465458 - 5465398
Alignment:
Q  122 aaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaatt 182  Q
    |||||||| ||| ||| | ||||||||| ||||| ||| ||||||||||||||||||||||    
T  5465458 aaacataaatcatttttcattcaattcacttttatctaaaatcaattttacaaaatcaatt 5465398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 707644 - 707699
Alignment:
Q  144 aattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||||||||||||| | |||||||| ||||| |||||||||||  ||||||||||||    
T  707644 aattcatttttagttggaatcaatcttacataatcaattcacgcaaaatcaatttt 707699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 4848111 - 4848064
Alignment:
Q  152 tttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    |||||||||||||||| |||||| || |||||||| ||||||||||||    
T  4848111 tttagctagaatcaatcttacaacattaattcactcaaaatcaatttt 4848064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 4975147 - 4975053
Alignment:
Q  103 tttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaattt 198  Q
    |||| |||| |||||||  ||||||||  || ||| | ||||||| | |||||||||||||||| |||| |||||||||||||| ||||| |||||    
T  4975147 ttttcatatgaatgtatcaaaacataaagcattttgctttcaatttaattttagctagaatcaa-tttataaaatcaattcactgaaaattaattt 4975053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 6095338 - 6095243
Alignment:
Q  103 tttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaattt 198  Q
    |||||| |||||| ||| ||||||||| ||| ||| |  |||| ||||| ||| |||||||||||||||  ||||||||| ||| ||||| |||||    
T  6095338 tttttacataaatatattcaaacataaatcatttttcaatcaactcattattatctagaatcaattttatcaaatcaatttactcaaaattaattt 6095243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 14299726 - 14299765
Alignment:
Q  19 attttgcctttagaattgattctagttgaagctagaaatt 58  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  14299726 attttgcctatagaattgattttagttgaagctagaaatt 14299765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 14671104 - 14671198
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||||| || |||| || ||||||||| | |||| || ||||||||| ||||||| | ||||||||| |||||||||||||| | ||||||| ||||    
T  14671104 ttttacatgaatgcatccaaacataaat-acttcacattcaattcacttttagccataatcaatttcacaaaatcaattcattcaaaatcattttt 14671198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 35139010 - 35138947
Alignment:
Q  123 aacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcact 186  Q
    ||||||| ||| ||||||||||| ||| ||||||  |||||||| |||||| ||||||||||||    
T  35139010 aacataaatcattttaccttcaactcaattttagacagaatcaagtttacataatcaattcact 35138947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 117502 - 117420
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcact 186  Q
    ||||| ||| |||||| ||||||| | ||| ||||||||||| ||| || |||  ||||||||| ||||| ||||||||||||    
T  117502 ttttacatagatgtatccaaacatgaatcattttaccttcaactcacttctagtcagaatcaatattacataatcaattcact 117420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 2124244 - 2124282
Alignment:
Q  161 aatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  2124244 aatcaattttacaaaatcaattctcttaaaatcaatttt 2124282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 18585394 - 18585325
Alignment:
Q  32 aattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgtt 101  Q
    |||||||| || || |||||| |||||| ||||||||| |||| |||| ||||||| | |||||||||||    
T  18585394 aattgattttacttcaagctaaaaattaaagcttttgaatctaaaatttattttaataatcaaatttgtt 18585325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 36927744 - 36927785
Alignment:
Q  44 ttgaagctagaaattagagcttttgattctataattgatttt 85  Q
    |||||||||||| ||||||||||| |||||| ||||||||||    
T  36927744 ttgaagctagaatttagagcttttaattctaaaattgatttt 36927785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 26100236 - 26100072
Alignment:
Q  29 tagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgt---------ttttatataaatgtat 119  Q
    |||||||| ||||| |||||||||| | ||  ||||||||||||||||||||||||| |||| ||||||| | ||         ||||| ||||||| ||    
T  26100236 tagaattggttctatttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcacttttacataaatgcat 26100137  T
Q  120 acaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattca 184  Q
     |||||| || |  |||||||||||| || |||||||  ||||||||||||||| ||||||||||    
T  26100136 ccaaacacaaatagctttaccttcaactcgtttttagtcagaatcaattttacataatcaattca 26100072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 7602105 - 7602042
Alignment:
Q  133 actttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaat 196  Q
    ||||||| |||||||||||||||| | |||||||||||| |||||||||||||| |||||||||    
T  7602105 actttacattcaattcatttttagttcgaatcaattttataaaatcaattcactcaaaatcaat 7602042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 32927971 - 32928064
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    ||||| || ||||||| |||||| || ||||||| ||||||| ||| ||||||  ||||||||||||||| ||||||||| || ||||||||||    
T  32927971 ttttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttagtaagaatcaattttacataatcaattccctcaaaatcaatt 32928064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 10368043 - 10368137
Alignment:
Q  103 tttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    |||||| || |||||||  ||||| || ||||||||||||||| ||| |||||   | |||||||||||||||| ||||||||| ||||||||||    
T  10368043 tttttacatgaatgtatctaaacacaaatcactttaccttcaactcacttttactcaaaatcaattttacaaaaacaattcactcaaaatcaatt 10368137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 3206135 - 3206231
Alignment:
Q  103 tttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttta 200  Q
    ||||||||||||||||| |||||| |||||| |||| ||| || | |||||||  || ||||||||||||||||| ||||  || |||||||||||||    
T  3206135 tttttatataaatgtattcaaacaaaattcattttatcttaaact-atttttacgtaaaatcaattttacaaaataaattagcttaaaatcaatttta 3206231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 28805254 - 28805335
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcac 185  Q
    |||||||| ||||||| ||||||||| ||| ||||| ||||| |||||||||  | |||||| ||||||||||||| |||||    
T  28805254 ttttatattaatgtattcaaacataaatcattttactttcaaatcatttttatttggaatcagttttacaaaatcacttcac 28805335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 1820460 - 1820512
Alignment:
Q  147 tcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||||||||||| ||||||||||| |||||| ||||||||| ||||||||||||    
T  1820460 tcatttttagccagaatcaatttaacaaaaccaattcactcaaaatcaatttt 1820512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 1854905 - 1854957
Alignment:
Q  147 tcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||||||||||| ||||||||||| |||||| ||||||||| ||||||||||||    
T  1854905 tcatttttagccagaatcaatttaacaaaaccaattcactcaaaatcaatttt 1854957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 13418920 - 13418840
Alignment:
Q  18 aattttgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    ||||||| ||| | ||||||||||| || |||  ||||||  ||||||||||||| |||||||||||||||| ||||||||    
T  13418920 aattttgtcttcaaaattgattctacttaaagtaagaaatcggagcttttgattccataattgattttaacattcaaattt 13418840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 4554330 - 4554401
Alignment:
Q  30 agaattgattctag-ttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgt 100  Q
    |||||||||||||  ||||||| ||||||| ||||||||||| ||| |||||||||| | ||||||||||||    
T  4554330 agaattgattctatcttgaagcaagaaatttgagcttttgatactaaaattgatttttatactcaaatttgt 4554401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 199
Target Start/End: Complemental strand, 9461544 - 9461450
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    |||||||| ||||||| |||||| || ||||||||  | ||||||||||| ||  ||||||||||||| | |||||||| ||| ||||||||||||    
T  9461544 ttttatatgaatgtatccaaacacaaatcactttagttgcaattcatttt-agtcagaatcaattttaaataatcaattaactcaaaatcaatttt 9461450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 4336625 - 4336571
Alignment:
Q  141 ttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaa 195  Q
    |||| |||| ||||||| | |||||||||||||||||||||||||| ||||||||    
T  4336625 ttcagttcacttttagccacaatcaattttacaaaatcaattcactcaaaatcaa 4336571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 4950568 - 4950638
Alignment:
Q  110 ataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaa 180  Q
    |||||| ||| ||||||||| ||||||||||||||| ||| || |||| | ||||||||||| ||||||||    
T  4950568 ataaatatatccaaacataaatcactttaccttcaactcaattatagcaataatcaattttaaaaaatcaa 4950638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 13384741 - 13384675
Alignment:
Q  32 aattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    ||||||||||| ||||||||| || ||  |||||||||||||| |||||||||| |||| |||||||    
T  13384741 aattgattctatttgaagctaaaatttgtagcttttgattctagaattgattttcacacacaaattt 13384675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 18355798 - 18355760
Alignment:
Q  161 aatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  18355798 aatcaattttacaaaatcaattcactcaaaatcaatttt 18355760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 18123305 - 18123398
Alignment:
Q  104 ttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    ||||| |||||| ||| | |||| || ||| ||||||||||||||| |||||| |||| || ||||||||  |||||||||||  |||||||||    
T  18123305 ttttacataaatatattccaacacaaatcattttaccttcaattcacttttagttagagtcgattttacatcatcaattcactctaaatcaatt 18123398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 1373081 - 1373149
Alignment:
Q  115 tgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattc 183  Q
    ||||| ||||||||| |||||| | |||||| ||| ||||| | | |||||||||||||||||||||||    
T  1373081 tgtatccaaacataaatcacttcaacttcaactcacttttatccaaaatcaattttacaaaatcaattc 1373149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 3478764 - 3478728
Alignment:
Q  58 tagagcttttgattctataattgattttaacactcaa 94  Q
    ||||||||||||||||| |||||||||||||||||||    
T  3478764 tagagcttttgattctaaaattgattttaacactcaa 3478728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 15677906 - 15677850
Alignment:
Q  29 tagaattgattctagttgaagctagaaattagagcttttgattctataattgatttt 85  Q
    |||||||||||||| |||||||||| | ||| ||||||||||| || ||||||||||    
T  15677906 tagaattgattctacttgaagctaggatttatagcttttgattatagaattgatttt 15677850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 30706283 - 30706323
Alignment:
Q  141 ttcaattcatttttagctagaatcaattttacaaaatcaat 181  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  30706283 ttcaattcattttcagttagaatcaattttacaaaatcaat 30706323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 191
Target Start/End: Original strand, 38516328 - 38516416
Alignment:
Q  103 tttttatataaatgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaa 191  Q
    |||||| ||||||  || ||||||||| ||||||||| ||||| ||| | ||| | | |||||||| ||||||||||||||||| ||||    
T  38516328 tttttacataaatacatccaaacataaatcactttacattcaactcactattatcgaaaatcaattctacaaaatcaattcactcaaaa 38516416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 38868487 - 38868562
Alignment:
Q  23 tgcctttagaattgattctagttgaagctagaaattagagcttttgattctataattgattttaacactcaaattt 98  Q
    ||||| || ||||||||||| |||||||||  | ||  |||||||| |||||||||||||||| |||| |||||||    
T  38868487 tgcctctaaaattgattctacttgaagctaagatttgtagcttttggttctataattgattttcacacacaaattt 38868562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 26559910 - 26559864
Alignment:
Q  151 ttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    |||||| ||||||||||||||  ||||||||||||| ||||||||||    
T  26559910 ttttagttagaatcaattttatcaaatcaattcactcaaaatcaatt 26559864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 32994215 - 32994153
Alignment:
Q  135 tttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatt 197  Q
    ||||||||||| ||| ||| ||| ||||||||||||||| ||||| |||| | ||||||||||    
T  32994215 tttaccttcaactcactttcagccagaatcaattttacataatcagttcattcaaaatcaatt 32994153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 35550309 - 35550347
Alignment:
Q  161 aatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  35550309 aatcaattttacaaaatcaattcaatcaaaatcaatttt 35550347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 38715270 - 38715192
Alignment:
Q  121 caaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    ||||||||| |||||||||  | || ||| ||||| ||| |||||||| | ||||||||||||| | ||||||||||||    
T  38715270 caaacataaatcactttacacttaactcaattttaactaaaatcaattctgcaaaatcaattcaattaaaatcaatttt 38715192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 5893332 - 5893385
Alignment:
Q  145 attcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaattt 198  Q
    ||||||||||||  | ||||||||||||| |||||||| ||| |||||||||||    
T  5893332 attcatttttagtcacaatcaattttacagaatcaattaactcaaaatcaattt 5893385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 32681279 - 32681238
Alignment:
Q  135 tttaccttcaattcatttttagctagaatcaattttacaaaa 176  Q
    |||| |||||||||||||||||  ||||||||||||||||||    
T  32681279 tttatcttcaattcatttttagtgagaatcaattttacaaaa 32681238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 15323 - 15240
Alignment:
Q  116 gtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 199  Q
    |||| ||||||||| ||||||||  ||||| ||| ||||| | | ||||||||| |||||||||||||  | ||||||||||||    
T  15323 gtatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaatttt 15240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University