View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10162_high_15 (Length: 270)
Name: NF10162_high_15
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10162_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 53279010 - 53279254
Alignment:
| Q |
16 |
catttttctgtcactcactcttgtgtataatgctgtgcattgatgaaaatttccaagcatgttccagtggttgaaaaccttgcaagtcaatcaataaaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53279010 |
catttttctgtcactcactcttgtgtataatgctgtgcattgatgaaaatttccaagcatgttccagtggttgaaaaccttgcaagtcaatcaataaaat |
53279109 |
T |
|
| Q |
116 |
aaatacacaggaatctcctctccttgtataacattgaccttctagtagaatattattttaattatttggatctggatctcgcatgacatgttatattttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53279110 |
aaatacacaggaatctcctctccttgtataacattgaccttctagtagaatattattttaattatttggatctggatctcgcatgacatgttatattttt |
53279209 |
T |
|
| Q |
216 |
aatgatagcctggcacacatatcttaatacaaatttactctctct |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53279210 |
aatgatagcctggcacacatatcttaatacaaatttactctctct |
53279254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University