View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10162_high_5 (Length: 491)
Name: NF10162_high_5
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10162_high_5 |
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| [»] scaffold0722 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 8 - 472
Target Start/End: Complemental strand, 35883099 - 35882640
Alignment:
| Q |
8 |
gagcacagacacaaatacccaaacgcaatcatatccaggaaccatagattttgtattttattttccacataacatgaaattgtgacacaccaccacacaa |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35883099 |
gagcaaagacacaaatacccaaacgcaatcatatccaggaaccatagattttgtattttattttccacataacatgaaattgtgacacaccaccacacaa |
35883000 |
T |
|
| Q |
108 |
ccatgttatggaacagagaataggacattagaaaattaaaaacccgtgaaagctagccattaatgaatgatagttgcattgcagtaaggtaactactcga |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
35882999 |
ccatgttatggaacagagaataggacattagaaaattaaaaacccgtgaaagc----cattaatgaatgatagttgca-----gtaaggtaactactcga |
35882909 |
T |
|
| Q |
208 |
aagaaatcaaaattcaaaacattgaatcannnnnnnnctgtacggtacacac----atacctgcaatacagtaaccagaaagaggcaacaagtttggatg |
303 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35882908 |
aagaaatcaaaattcaaaacattgaatcattttttttctgtacggtacacacatacatacctgcaatacagtaaccagaaagaggcaacaagtttggatg |
35882809 |
T |
|
| Q |
304 |
tttcagtttcgataagtcaacaaacatagccacagagtcatcataatcaacgtctctgacatgttcaagaaccttgattgccacgtgtatttcaccgggt |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35882808 |
tttcagtttcgataagtcaacaaacatagccacagagtcatcataatcaacgtctctgacatgttcaagaaccttgattgccacgtgtatttcaccgggc |
35882709 |
T |
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| Q |
404 |
aacacggcccaatacactggtccacaccttccttctgctagctgtgactctttcccgaaatgtgacgtg |
472 |
Q |
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| T |
35882708 |
aacacggcccaatacactggtccacaccttccttctgctagctgtgactctttcccgaaatgtgacgtg |
35882640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 8 - 472
Target Start/End: Complemental strand, 24457300 - 24456841
Alignment:
| Q |
8 |
gagcacagacacaaatacccaaacgcaatcatatccaggaaccatagattttgtattttattttccacataacatgaaattgtgacacaccaccacacaa |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24457300 |
gagcaaagacacaaatacccaaacgcaatcatatccaggaaccatagattttgtattttattttccacataacatgaaattgtgacacaccaccacacaa |
24457201 |
T |
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| Q |
108 |
ccatgttatggaacagagaataggacattagaaaattaaaaacccgtgaaagctagccattaatgaatgatagttgcattgcagtaaggtaactactcga |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
24457200 |
ccatgttatggaacagagaataggacattagaaaattaaaaacccgtgaaagc----cattaatgaatgatagttgca-----gtaaggtaactactcga |
24457110 |
T |
|
| Q |
208 |
aagaaatcaaaattcaaaacattgaatcannnnnnnnctgtacggtacacac----atacctgcaatacagtaaccagaaagaggcaacaagtttggatg |
303 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24457109 |
aagaaatcaaaattcaaaacattgaatcattttttttctgtacggtacacacatacatacctgcaatacagtaaccagaaagaggcaacaagtttggatg |
24457010 |
T |
|
| Q |
304 |
tttcagtttcgataagtcaacaaacatagccacagagtcatcataatcaacgtctctgacatgttcaagaaccttgattgccacgtgtatttcaccgggt |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24457009 |
tttcagtttcgataagtcaacaaacatagccacagagtcatcataatcaacgtctctgacatgttcaagaaccttgattgccacgtgtatttcaccgggc |
24456910 |
T |
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| Q |
404 |
aacacggcccaatacactggtccacaccttccttctgctagctgtgactctttcccgaaatgtgacgtg |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456909 |
aacacggcccaatacactggtccacaccttccttctgctagctgtgactctttcccgaaatgtgacgtg |
24456841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0722 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0722
Description:
Target: scaffold0722; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 261 - 472
Target Start/End: Original strand, 2132 - 2344
Alignment:
| Q |
261 |
tacctgcaatacagtaaccagaaagaggcaacaagtttggatgtttcagtttcgataagtcaa-caaacatagccacagagtcatcataatcaacgtctc |
359 |
Q |
| |
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||||||| || |||||||||||||| ||||| | || |||||||| || || || ||||||| |||| || | |||| ||||||| |||||| |||| |
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| T |
2132 |
tacctgcgatgcagtaaccagaaagtggcaaaagattgggatgtttaagcttagacaagtcaaacaaaagtatcaacagcatcatcatgatcaacctctc |
2231 |
T |
|
| Q |
360 |
tgacatgttcaagaaccttgattgccacgtgtatttcaccgggtaacacggcccaatacactggtccacaccttccttctgctagctgtgactctttccc |
459 |
Q |
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| ||| |||||||||||| ||||||||||||| || || ||||| || || | ||| || || ||||| || ||||| |||||||| || |||||||| |
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| T |
2232 |
tagcattttcaagaaccttaattgccacgtgtaactccccaggtaaaacagcacgataaacgggcccacatctaccttcagctagctgagaatctttccc |
2331 |
T |
|
| Q |
460 |
gaaatgtgacgtg |
472 |
Q |
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|||| ||||||| |
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| T |
2332 |
aaaatatgacgtg |
2344 |
T |
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