View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10162_high_8 (Length: 384)
Name: NF10162_high_8
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10162_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 71 - 359
Target Start/End: Original strand, 18138020 - 18138308
Alignment:
| Q |
71 |
gtgtgtatttggaataggtatg-ctcacaaagaccaaacctcaaaacatgataaaagaacaaagccaaagaaaaattaacatcagaaattggattcacca |
169 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18138020 |
gtgtgtatttggaataggtttttctcacaaagaccaa-cctcaaaacatgataaaagaacgaagccaaagaaaaattaacatcagaaattggattcacca |
18138118 |
T |
|
| Q |
170 |
aacccaacttgggaagatgttactagtatacaaaatcaggatatctaaagagttacctaacttgcactgttacaaactatagtacattcatacatacctt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
18138119 |
aacccaacttgggaagatgttactagtatacaaaatcaggatatctaaagagttacctaacttgcactgttccaaactatagtacattcatacctacctt |
18138218 |
T |
|
| Q |
270 |
ctaaattttcaatttctgcatttatatttattattaggcagtattataaaccagaagattgtacatcagcggcaaaataaagcattgggt |
359 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18138219 |
ctgaaatttcaatttctgcatttatatttattattaggcagtattataaaccagaagattgtacatcagcggcaaaataaagcattgggt |
18138308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 67 - 364
Target Start/End: Complemental strand, 18107966 - 18107669
Alignment:
| Q |
67 |
aagtgtgtgtatttggaataggtatgctcacaaagaccaaacctcaaaacatgataaaagaacaaagccaaagaaaaattaacatcagaaattggattca |
166 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18107966 |
aagtgtgtgtatttggaataggtctgctcacaaagaccaaacctcaaaacatgataaaagaacaaagccaaagaaaaattaacatcagaaattggattca |
18107867 |
T |
|
| Q |
167 |
ccaaacccaacttgggaagatgttactagtatacaaaatcaggatatctaaagagttacctaacttgcactgttacaaactatagtacattcatacatac |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||| |
|
|
| T |
18107866 |
ccaaacccaacttgggaagatgttactagtatacaaaatcagcatacctaaagagttaccaaacttgcactgttccaaactatagtacatccatacctac |
18107767 |
T |
|
| Q |
267 |
cttctaaattttcaatttctgcatttatatttattattaggcagtattataaaccagaagattgtacatcagcggcaaaataaagcattgggtagcat |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||| |||||||||||||| ||||||||| |
|
|
| T |
18107766 |
cttctaaattttcaatttctgcatttatatttcatattaggcagtattatcaaccagaagattgtgcatcagtggcaaaataaagcaccgggtagcat |
18107669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 106 - 339
Target Start/End: Complemental strand, 18098397 - 18098172
Alignment:
| Q |
106 |
aacctcaaaacatgataaaagaacaaagccaaagaaaaattaacatcagaaattggattcaccaaacccaacttgggaagatgttactagtatacaaaat |
205 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||| |||| |||||| ||||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
18098397 |
aacctcaaaacaggataaaagaacaaagccatagaaacatta---tcagaacttggattcaccaaacccgacctgggaagatgttactat-----aaaat |
18098306 |
T |
|
| Q |
206 |
caggatatctaaagagttacctaacttgcactgttacaaactatagtacattcatacataccttctaaattttcaatttctgcatttatatttattatta |
305 |
Q |
| |
|
||||| ||||||||||||| ||||||| |||||| |||||||||||||||| |||| |||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
18098305 |
caggacatctaaagagttatctaacttttactgttccaaactatagtacattgatacctaccttctaaattttcaatttctgcattgatatttcctatta |
18098206 |
T |
|
| Q |
306 |
ggcagtattataaaccagaagattgtacatcagc |
339 |
Q |
| |
|
| |||||||||||||||||||||| |||||||| |
|
|
| T |
18098205 |
gacagtattataaaccagaagattacacatcagc |
18098172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 350
Target Start/End: Complemental strand, 18082969 - 18082866
Alignment:
| Q |
247 |
tatagtacattcatacataccttctaaattttcaatttctgcatttatatttattattaggcagtattataaaccagaagattgtacatcagcggcaaaa |
346 |
Q |
| |
|
||||| ||||| |||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
18082969 |
tatagcacattgatacctaccttctaaattttcaatttctgcattgatatttcctattaggcagtattataaatcagaagattacacatcagctccaaaa |
18082870 |
T |
|
| Q |
347 |
taaa |
350 |
Q |
| |
|
|||| |
|
|
| T |
18082869 |
taaa |
18082866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 15951729 - 15951824
Alignment:
| Q |
71 |
gtgtgtatttggaataggtat-gctcacaaagaccaaacctcaaaacatgataaaagaacaaagccaaagaaaaattaacatcagaaattggattcac |
167 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| ||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
15951729 |
gtgtgtatttggaataggttttgctcacaaagaccaa-cctttaaacatgataaaagaacgaagccgaagaaaaa-taacatcagaaattggattcac |
15951824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 11547609 - 11547682
Alignment:
| Q |
225 |
cctaacttgcactgttacaaactatagtacattcatacataccttctaaattttcaatttctgcatttatattt |
298 |
Q |
| |
|
|||||||| ||| || |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11547609 |
cctaacttctactctttcaaactatagtacattgatacataccttctaaatttccaatttctgcatttatattt |
11547682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 106 - 213
Target Start/End: Complemental strand, 18083074 - 18082970
Alignment:
| Q |
106 |
aacctcaaaacatgataaaagaacaaagccaaagaaaaattaacatcagaaattggattcaccaaacccaacttgggaagatgttactagtatacaaaat |
205 |
Q |
| |
|
|||||||||||| | |||||||||||||||| ||||| |||| ||||| |||||||||||||||| || |||||||||||| ||| |||||||||| |
|
|
| T |
18083074 |
aacctcaaaacaagttaaaagaacaaagccatagaaacatta---tcagagcttggattcaccaaacctgacctgggaagatgttcctaatatacaaaat |
18082978 |
T |
|
| Q |
206 |
caggatat |
213 |
Q |
| |
|
||||||| |
|
|
| T |
18082977 |
taggatat |
18082970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 18137501 - 18137547
Alignment:
| Q |
22 |
agatatagcgctctataacacgactatattctacaacaaacttcaaa |
68 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18137501 |
agatatagcgctctataacacgcctatattctacaacaaacttcaaa |
18137547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 11552387 - 11552442
Alignment:
| Q |
242 |
caaactatagtacattcatacataccttctaaattttcaatttctgcatttatatt |
297 |
Q |
| |
|
|||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||| |
|
|
| T |
11552387 |
caaactatagtacattgatacgtaccttttaaatttccaatttctgcatttatatt |
11552442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 18083485 - 18083443
Alignment:
| Q |
19 |
cacagatatagcgctctataacacgactatattctacaacaaa |
61 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
18083485 |
cacagataaagcgctctaaaacacgactatattctacaacaaa |
18083443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University