View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10162_low_11 (Length: 365)
Name: NF10162_low_11
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10162_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 4483767 - 4483420
Alignment:
| Q |
1 |
agagtaggagcaaacaagtatagagaaaaccaaccaataggaactgctgctcaatctcaagacaatgatgctaaagactataaagaggcaccttcagcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4483767 |
agagtaggagcaaacaagtatagagaaaaccaaccaataggaactgctgctcaatctcaagacaatgatgctaaagactataaagaggcaccttcagcgc |
4483668 |
T |
|
| Q |
101 |
ctttatttgagcatcgagagttatcatcatggtctttctatagggcagggattgctgagtttgtggctacatttttgtttctttatataacggttttaac |
200 |
Q |
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| T |
4483667 |
ctttatttgagcatggagagttatcatcatggtctttctatagggcagggattgctgagtttgtggctacatttttgtttctttatataacggttttaac |
4483568 |
T |
|
| Q |
201 |
tgttatgggtgtgaataaatccagtaataaatgctcctcagttggtgttcagggaattgcttgggcttttggtggaatgatttttgctcttgtttattgt |
300 |
Q |
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| T |
4483567 |
tgtgatgggtgtgaataaatccagtaataaatgctcctcagttggtgttcagggaattgcttgggcttttggtggaatgatttttgctcttgtttattgt |
4483468 |
T |
|
| Q |
301 |
actgctggtatctcaggtaaaattcacatatcgattgttcaatcaatt |
348 |
Q |
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| T |
4483467 |
actgctggtatctcaggtaaaattcacataccaattgttcaatcaatt |
4483420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 76 - 320
Target Start/End: Complemental strand, 2650327 - 2650083
Alignment:
| Q |
76 |
gactataaagaggcaccttcagcacctttatttgagcatcgagagttatcatcatggtctttctatagggcagggattgctgagtttgtggctacatttt |
175 |
Q |
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| T |
2650327 |
gactacaaagaagcaccaccagcacctttgtttgagccaggagagttgaagtcatggtcattttatagagctgggattgctgaatttgttgcaactttct |
2650228 |
T |
|
| Q |
176 |
tgtttctttatataacggttttaactgttatgggtgtgaataaatccagtaataaatgctcctcagttggtgttcagggaattgcttgggcttttggtgg |
275 |
Q |
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|||| ||||| || || || || ||||| ||||||||||||| || |||||| |||| |||||| |||| ||||||||||||||||||||||| |
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| T |
2650227 |
tgttcctttacatcactgtcttgactgtgatgggtgtgaataggtcaccctctaaatgtgcctctgttggtattcaaggaattgcttgggcttttggtgg |
2650128 |
T |
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| Q |
276 |
aatgatttttgctcttgtttattgtactgctggtatctcaggtaa |
320 |
Q |
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| T |
2650127 |
tatgatctttgctcttgtctattgcactgctggaatttcaggtaa |
2650083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 35230916 - 35230845
Alignment:
| Q |
248 |
ttcagggaattgcttgggcttttggtggaatgatttttgctcttgtttattgtactgctggtatctcaggta |
319 |
Q |
| |
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| T |
35230916 |
ttcaaggaattgcttgggcttttggtggcatgatctttgctcttgtttactgtactgctggaatctcaggta |
35230845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 35231037 - 35230952
Alignment:
| Q |
127 |
tcatggtctttctatagggcagggattgctgagtttgtggctacatttttgtttctttatataacggttttaactgttatgggtgt |
212 |
Q |
| |
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| T |
35231037 |
tcatggtctttctacagagctgggatagctgagttcgttgctactttcctttttctttatatcactgttttgactgttatgggtgt |
35230952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 241 - 319
Target Start/End: Complemental strand, 31460824 - 31460746
Alignment:
| Q |
241 |
gttggtgttcagggaattgcttgggcttttggtggaatgatttttgctcttgtttattgtactgctggtatctcaggta |
319 |
Q |
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|||||| |||| |||||||||||| |||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||| |
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| T |
31460824 |
gttggtattcaaggaattgcttggtcttttggtggcatgatctttgctcttgtttactgtaccgctggtatctctggta |
31460746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 40208111 - 40208071
Alignment:
| Q |
241 |
gttggtgttcagggaattgcttgggcttttggtggaatgat |
281 |
Q |
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| T |
40208111 |
gttggtgttttgggaattgcttgggcttttggtggtatgat |
40208071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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