View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10162_low_12 (Length: 349)
Name: NF10162_low_12
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10162_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 29 - 331
Target Start/End: Original strand, 28187644 - 28187946
Alignment:
| Q |
29 |
agttttattcttgactttcaacttttgtttcagaattttgagcttctggctaagaatgaacatatgacatgcaacgatattggtattcgaaacttcttgt |
128 |
Q |
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| T |
28187644 |
agttttattccagacttttaacttttgctttaggattttgagtttctggctaagaatgaatatatgacagccaacaatatttgtgttccagacttcttgt |
28187743 |
T |
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| Q |
129 |
atcatcctatgacaatcctcatgatgtgtccacatatgcatgaatttgaattgagaggaaaaactatgtgtggaattttcaaactcaagtaataaaggaa |
228 |
Q |
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| T |
28187744 |
atcaccctgtgacaatctttatgatgggtccacaattgcatgaatttaaattgggaagtaaaactatgagtagaattatcaaattcaagtaatagtggaa |
28187843 |
T |
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| Q |
229 |
aatgatcagacttgtgctttaccattgtggacacatttagagagttgcaagcatctagccaatcttgattacaaatcactctatccaatcttctttaagt |
328 |
Q |
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| T |
28187844 |
agtgatccgacttgtgctttaccagtgttgacacattcagagagttgcaaacatccagccagttttgattacaaatcactctatccaatcttctttcagt |
28187943 |
T |
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| Q |
329 |
gtg |
331 |
Q |
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||| |
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| T |
28187944 |
gtg |
28187946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 14720269 - 14720112
Alignment:
| Q |
20 |
gccaaagatagttttattcttgactttcaacttttgtttcagaattttgagcttctggctaagaatgaacatatgacatgcaacgatattggtattcgaa |
119 |
Q |
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| T |
14720269 |
gccaaagacagttttattccagactttcaacttttgtttcaaaattttgagcttctgactaagaatgaacatatgacatccaacgatattggtattccaa |
14720170 |
T |
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| Q |
120 |
acttcttgtatcatcctatgacaatcctcatgatgtgtccacatatgcatgaatttga |
177 |
Q |
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| T |
14720169 |
tcttcttgtatcatcctatgacaatcctcatgatgtgtgcacatatgcatgaatttga |
14720112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 29 - 331
Target Start/End: Complemental strand, 7572582 - 7572280
Alignment:
| Q |
29 |
agttttattcttgactttcaacttttgtttcagaattttgagcttctggctaagaatgaacatatgacatgcaacgatattggtattcgaaacttcttgt |
128 |
Q |
| |
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|||||||||| |||||||| ||||| || | |||||| || ||||||| |||||||||||||||||| |||| || || || ||| | ||||||||| |
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| T |
7572582 |
agttttattccaaactttcaatttttgctttaaaatttttagtttctggcaaagaatgaacatatgacaaccaacaatgtttgtgttccagacttcttgt |
7572483 |
T |
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| Q |
129 |
atcatcctatgacaatcctcatgatgtgtccacatatgcatgaatttgaattgagaggaaaaactatgtgtggaattttcaaactcaagtaataaaggaa |
228 |
Q |
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| T |
7572482 |
atcaccctgcgacaatctttatggtgggtccacatttgcataaatttaaattgggaagcaaaactatgagaagaattatcaaattcaagtaacagtggaa |
7572383 |
T |
|
| Q |
229 |
aatgatcagacttgtgctttaccattgtggacacatttagagagttgcaagcatctagccaatcttgattacaaatcactctatccaatcttctttaagt |
328 |
Q |
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| ||||||||||| |||||||||| ||| |||||||| ||||| ||||| |||| |||| | ||||||| |||| ||||||||||||||||||| ||| |
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| T |
7572382 |
agtgatcagacttatgctttaccagtgttgacacattcagagaattgcagacatccagccggtgttgattaaaaataactctatccaatcttctttcagt |
7572283 |
T |
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| Q |
329 |
gtg |
331 |
Q |
| |
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||| |
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| T |
7572282 |
gtg |
7572280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 247
Target Start/End: Complemental strand, 10009703 - 10009597
Alignment:
| Q |
141 |
caatcctcatgatgtgtccacatatgcatgaatttgaattgagaggaaaaactatgtgtggaattttcaaactcaagtaataaaggaaaatgatcagact |
240 |
Q |
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||||| |||||||| ||||||| ||||| || || ||||| || |||||||||| ||| |||||||||||| ||| | |||||||||||| |||| |
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| T |
10009703 |
caatcttcatgatgaatccacatttgcataaacttaaattgcgacaaaaaactatgatgagaagtttcaaactcaactaaaagaggaaaatgatctgact |
10009604 |
T |
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| Q |
241 |
tgtgctt |
247 |
Q |
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||||||| |
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| T |
10009603 |
tgtgctt |
10009597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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