View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10162_low_13 (Length: 347)
Name: NF10162_low_13
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10162_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 10479279 - 10479621
Alignment:
| Q |
1 |
tttctaatacgagtgaaatatgcaatatgtttttatacttagatatggaaagggatattatttgatttatattttcaaacatttaattagaaaaattagc |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10479279 |
tttctaatacgagtgaaatatgcaatatgtgtttatacttagagatgaagtgagatattatttgatttatattttcaaacatttaattagaaaaattagc |
10479378 |
T |
|
| Q |
101 |
atggtttggaaattacaaacaacttcttggttgcctaatatccaaattgaatgtataaaaagaggggtgtgtggatagcaaaaacaagagcacataagct |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10479379 |
atggtttggaaattacaaacaacttcttggttgcccaatatccaaattgaatgtataaaaagaggggtgtgtggatagcaaaaacaagagcacataagct |
10479478 |
T |
|
| Q |
201 |
aagcccacttaaatataggcccaatattcaggtcaccgtcttcttc---ccacaatggtgaacgcgaatcaaaacccaaaaccctgaaacggttcgcata |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10479479 |
aagcccacttaaatataggcccaatattcaggtcaccgtcttcttcacacaacaatggtgaacgcgaatcaaaacccaaaaccctgaaacggttcgcata |
10479578 |
T |
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| Q |
298 |
acattgcaaattctcaaaaccctatacccccaaattcatctca |
340 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10479579 |
acattgcaaattctcaaaaccctaaacccccaaattcatctca |
10479621 |
T |
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