View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10162_low_15 (Length: 343)
Name: NF10162_low_15
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10162_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 54949132 - 54948817
Alignment:
| Q |
18 |
gtatagtaatgctccattggagaaaaaccaattgactgatgaaggtaagtatttttcatcaggatgtaggtatagaaatggagagtaaactttgagtatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
54949132 |
gtatagtaatgctccattggagaaaaaccaattgactgatgaaggtaagtatttttcatcaggatgtaggtatacaaatggagagtaaactttgagtatt |
54949033 |
T |
|
| Q |
118 |
gctttaatttgttgtagattaggcatgatctttgaaatggaattaaggtttttcaaacatgaaatagatggagggttagtaagtctaccattttgtgcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54949032 |
gctttaatttgttgtagattaggcatgatctttgaaatggaattaaggtttttcaaacatgaaatagatggagggttagtaagtctaccattttgtgcaa |
54948933 |
T |
|
| Q |
218 |
caaaagtacctacatgaatgcctcgagcttgagttcctctacttattggtctaacgtcatagaaattgaagtcttcggattcccaaatcaacgaagaagt |
317 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54948932 |
caaaagtgcctacatgaatgcctcgagcttgagttcctctacttattggtctaacgtcatagaaattgaagtcttcggattcccaaatcaacgaagaagt |
54948833 |
T |
|
| Q |
318 |
ttcgcatttctctgtg |
333 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
54948832 |
ttcgcatttctctgtg |
54948817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 26356075 - 26355768
Alignment:
| Q |
18 |
gtatagtaatgctccattggagaaaaaccaattgactgatgaaggtaagtatttttcatcaggatgtaggtatagaaatggagagtaaactttgagtatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || || ||||||||||||| |||||||||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
26356075 |
gtatagtaatgctccattggagaaaaaccaattaaccgaggaaggtaagtattcttcatcaggatgtaagtacatcaatggagagtaaactttgagtatt |
26355976 |
T |
|
| Q |
118 |
gctttaatttgttgtagattaggcatgatctttgaaatggaattaaggtttttcaaacatgaaatagatggagggttagtaagtctaccattttgtgcaa |
217 |
Q |
| |
|
|| | ||||||| |||||| |||||||| || ||||| ||||| || ||||||||||||||||||||||||||| || || | |||||||||||||| |
|
|
| T |
26355975 |
gcatcaatttgtactagatttggcatgattttggaaattgaattgagatttttcaaacatgaaatagatggagggatattagtcccaccattttgtgcaa |
26355876 |
T |
|
| Q |
218 |
caaaagtacctacatgaatgcctcgagcttgagttcctctacttattggtctaacgtcatagaaattgaagtcttcggattcccaaatcaacgaagaagt |
317 |
Q |
| |
|
|||| | || || |||| || ||||||||||||||||| | || |||||||| ||||| ||||||||||| | ||| |||| ||| ||||||||| |
|
|
| T |
26355875 |
caaaggcgccaacgtgaacaccgggagcttgagttcctctattgatcggtctaacatcataaaaattgaagtcgtttgatccccagatccacgaagaaga |
26355776 |
T |
|
| Q |
318 |
ttcgcatt |
325 |
Q |
| |
|
||||||| |
|
|
| T |
26355775 |
ctcgcatt |
26355768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 26348353 - 26348651
Alignment:
| Q |
18 |
gtatagtaatgctccattggagaaaaaccaattgactgatgaaggtaagtatttttcatcaggatgtaggtatagaaatggagagtaaactttgagtatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || || ||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||| ||| |
|
|
| T |
26348353 |
gtatagtaatgctccattggagaaaaaccaattaaccgaggaaggtaagtattcttcatcagaatgtaagtatagaaatggagagtaaacttggagcatt |
26348452 |
T |
|
| Q |
118 |
gctttaatttgttgtagattaggcatgatctttgaaatggaattaaggtttttcaaacatgaaatagatggagggttagtaagtctaccattttgtgcaa |
217 |
Q |
| |
|
|| | |||||||| | |||||||||||| | |||||| ||||| || || |||||||||||||| ||||||||||||||| | ||||||||| |||| |
|
|
| T |
26348453 |
gcctcaatttgttttttattaggcatgatttgtgaaatagaattgagattcttcaaacatgaaattgatggagggttagtattcccaccattttgagcaa |
26348552 |
T |
|
| Q |
218 |
caaaagtacctacatgaatgcctcgagcttgagttcctctacttattggtctaacgtcatagaaattgaagtcttcggattcccaaatcaacgaagaag |
316 |
Q |
| |
|
|| ||||| || ||| || ||||||||||||||||| | ||||||||||| | ||||||||||||| | ||| |||||||| ||||||||| |
|
|
| T |
26348553 |
agaaggtaccgactcgaacaccaggagcttgagttcctctattgattggtctaacattgtagaaattgaagttgtttgatccccaaatccacgaagaag |
26348651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 26333120 - 26333392
Alignment:
| Q |
18 |
gtatagtaatgctccattggagaaaaaccaattgactgatgaaggtaagtatttttcatcaggatgtaggtatagaaatggagagtaaactttgagtatt |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| || ||||||||||||| |||||||||||||| |||||| |||||||||||| | ||||| | |
|
|
| T |
26333120 |
gtatagtaacgctccattggagaaaaaccaattgacagaggaaggtaagtattcttcatcaggatgtaagtataggaatggagagtaagagtggagtaat |
26333219 |
T |
|
| Q |
118 |
gctttaatttgttgtagattaggcatgatctttgaaatggaattaaggtttttcaaacatgaaatagatggagggttagtaagtctaccattttgtgcaa |
217 |
Q |
| |
|
| | ||||||| | ||||||||||||| | |||||| ||||| || || |||||||| ||||| ||||||||||||||| | ||||||||| |||| |
|
|
| T |
26333220 |
gtctcaatttgtgtttgattaggcatgatttgtgaaatagaattgagattcttcaaacacgaaattgatggagggttagtattcccaccattttgagcaa |
26333319 |
T |
|
| Q |
218 |
caaaagtacctacatgaatgcctcgagcttgagttcctctacttattggtctaacgtcatagaaattgaagtc |
290 |
Q |
| |
|
| || || || || ||| || |||||| | |||||||| | |||||||||||||| |||||||| ||||| |
|
|
| T |
26333320 |
cgaaggtgccaacgcgaacaccgggagctttacttcctctattaattggtctaacgtcgtagaaatttaagtc |
26333392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 26338441 - 26338756
Alignment:
| Q |
18 |
gtatagtaatgctccattggagaaaaaccaattgactgatgaaggtaagtatttttcatcaggatgtaggtatagaaatggagagtaaactttgagtatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || || ||||||||||||| |||||| | ||||| ||||| ||||||| | ||||| ||||| | |
|
|
| T |
26338441 |
gtatagtaatgctccattggagaaaaaccaattaaccgaggaaggtaagtattcttcatcggaatgtaagtataagaatggagcattaacttggagtagt |
26338540 |
T |
|
| Q |
118 |
gctttaatttgttgtagattaggcatgatctttgaaatggaattaaggtttttcaaacatgaaatagatggagggttagtaagtctaccattttgtgcaa |
217 |
Q |
| |
|
|| | |||||||| | | |||||||||| | || ||| |||| || || |||||||||||||| ||||| |||||| || | ||||||||| |||| |
|
|
| T |
26338541 |
gcatcaatttgttttttactaggcatgatttgtgtaatagaatcaatattcttcaaacatgaaattgatggcgggttaatattcccaccattttgagcaa |
26338640 |
T |
|
| Q |
218 |
caaaagtacctacatgaatgcctcgagcttgagttcctctacttattggtctaacgtcatagaaattgaagtcttcggattcccaaatcaacgaagaagt |
317 |
Q |
| |
|
| || || || || ||| || |||||| | |||||||| | ||||||||||| || |||||||| ||| | | ||| |||||||||| | ||| | |
|
|
| T |
26338641 |
cgaatgtgccaactcgaacaccgagagctttaattcctctattaattggtctaacatcgtagaaatttaagccgtttgatccccaaatcaatgtagacga |
26338740 |
T |
|
| Q |
318 |
ttcgcatttctctgtg |
333 |
Q |
| |
|
||| |||| ||||||| |
|
|
| T |
26338741 |
ttcacattgctctgtg |
26338756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University