View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10162_low_17 (Length: 309)
Name: NF10162_low_17
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10162_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 31845078 - 31845354
Alignment:
| Q |
19 |
cttctcggtaaagatccaaccattaactctcacnnnnnnnnctctctttctttctacacatcacaggtagaagaagtaaaagagggaagagttaattatg |
118 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31845078 |
cttctcggtaaagatccaaccattaactctcacttttttgtttctctctctcaaaacacatcacaggtagaagaagtaaaagagggaagagttaattatg |
31845177 |
T |
|
| Q |
119 |
agtattagctcataaatagagttgaggactttctagtcaatagtcagtaaaactatgaactcctcctaggttagctataagtaaccggggtccagggtat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31845178 |
agtattagctcataaatagagttgaggactttctagtcaatagtcagtaaaactatgaactcctcctaggttggctataagtaaccggggtccagggtat |
31845277 |
T |
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| Q |
219 |
ggcctcttttctttttcttcatttgagtggttttttcaattaactataagtttaaccaatgtatatttggattagtg |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31845278 |
ggcctcttttctttttcttcatttgagtggttttttcaattaactataagtttaaccaatgtatatttggattagtg |
31845354 |
T |
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