View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10162_low_18 (Length: 305)
Name: NF10162_low_18
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10162_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 41262928 - 41263133
Alignment:
| Q |
15 |
cataaacaagttaataaatatacttcactttgagctacccaacccgcattaacaccataaacttaaaacagatatttgatttacaaaatgnnnnnnnnnt |
114 |
Q |
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| T |
41262928 |
cataaacaagttaataaatatacttcacttagagctacccaacccgcattaacaccataaacttaaaacagatatttgatttacaaaatgaaaaaaaaat |
41263027 |
T |
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| Q |
115 |
tccaagatcaaaaccaaaattcagtatacttacagttacatagattgaacatatatttgaatctataaaaatgatagtaattatttattactatcagaat |
214 |
Q |
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| T |
41263028 |
tacaagatcaaaaccaaaattcagtatacttacagttacatagattgaacatatatttaaatctataaaaatgatggtaattatttattactatcagaat |
41263127 |
T |
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| Q |
215 |
tcagag |
220 |
Q |
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|||||| |
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| T |
41263128 |
tcagag |
41263133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 195 - 294
Target Start/End: Original strand, 40006250 - 40006349
Alignment:
| Q |
195 |
ttatttattactatcagaattcagagccataaaaatcaagcacaaggccacattccatggtaacatgttttggattatttgatgaactaatctgtttctt |
294 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40006250 |
ttatttcttactatcagaattcagagccataaaaatcaagcacaaggccacattccttggtaacatgttttggattatctgatgaactaatctgtttctt |
40006349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 215 - 294
Target Start/End: Original strand, 41263169 - 41263248
Alignment:
| Q |
215 |
tcagagccataaaaatcaagcacaaggccacattccatggtaacatgttttggattatttgatgaactaatctgtttctt |
294 |
Q |
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| T |
41263169 |
tcagagccataaaaatcaagcacaaggccacattccttggtaacatgttttggattatttgatgaactaatctgtttctt |
41263248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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