View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10162_low_2 (Length: 627)

Name: NF10162_low_2
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10162_low_2
NF10162_low_2
[»] chr7 (15 HSPs)
chr7 (490-615)||(41279910-41280035)
chr7 (490-615)||(41286966-41287091)
chr7 (424-493)||(7460560-7460629)
chr7 (436-493)||(24185670-24185727)
chr7 (435-493)||(24188224-24188282)
chr7 (436-481)||(7460908-7460953)
chr7 (436-493)||(43511205-43511262)
chr7 (433-493)||(43510878-43510938)
chr7 (430-481)||(17813971-17814022)
chr7 (435-469)||(22566303-22566337)
chr7 (444-493)||(6376375-6376424)
chr7 (436-493)||(6376714-6376771)
chr7 (436-481)||(10017960-10018005)
chr7 (436-469)||(34535695-34535728)
chr7 (435-487)||(36469895-36469946)
[»] chr4 (24 HSPs)
chr4 (501-613)||(19524380-19524492)
chr4 (426-493)||(45505414-45505481)
chr4 (429-493)||(17524198-17524262)
chr4 (430-493)||(11306608-11306671)
chr4 (435-493)||(18415041-18415099)
chr4 (435-493)||(31141679-31141737)
chr4 (435-493)||(31143753-31143811)
chr4 (435-493)||(49983793-49983851)
chr4 (433-493)||(48846068-48846128)
chr4 (438-481)||(4592722-4592765)
chr4 (432-490)||(43913391-43913449)
chr4 (435-481)||(49984165-49984211)
chr4 (424-485)||(46397295-46397356)
chr4 (436-493)||(52485343-52485400)
chr4 (433-493)||(24671950-24672010)
chr4 (435-493)||(4416476-4416534)
chr4 (435-493)||(5665798-5665856)
chr4 (435-481)||(5688760-5688806)
chr4 (435-485)||(37724758-37724808)
chr4 (435-469)||(45170894-45170928)
chr4 (435-469)||(45505059-45505093)
chr4 (436-493)||(4416832-4416889)
chr4 (436-493)||(36752860-36752917)
chr4 (433-493)||(20268892-20268952)
[»] chr1 (25 HSPs)
chr1 (433-493)||(48171791-48171851)
chr1 (433-493)||(48171440-48171500)
chr1 (432-481)||(22792287-22792336)
chr1 (428-477)||(25622601-25622650)
chr1 (435-490)||(42604630-42604685)
chr1 (435-493)||(19987334-19987392)
chr1 (435-481)||(42604996-42605042)
chr1 (432-481)||(142808-142857)
chr1 (435-480)||(6043448-6043493)
chr1 (436-493)||(33460240-33460297)
chr1 (436-493)||(34517965-34518022)
chr1 (435-491)||(143170-143226)
chr1 (433-469)||(35795695-35795731)
chr1 (430-481)||(8718402-8718453)
chr1 (435-490)||(8718554-8718609)
chr1 (426-481)||(35795304-35795359)
chr1 (435-481)||(31872965-31873011)
chr1 (435-493)||(33459895-33459953)
chr1 (435-469)||(37245947-37245981)
chr1 (436-493)||(14419821-14419878)
chr1 (433-474)||(14420153-14420194)
chr1 (436-481)||(18519656-18519701)
chr1 (436-481)||(22792644-22792689)
chr1 (436-469)||(31872709-31872742)
chr1 (435-467)||(3075292-3075324)
[»] chr8 (17 HSPs)
chr8 (435-493)||(4623455-4623513)
chr8 (429-493)||(4623063-4623127)
chr8 (435-493)||(7535300-7535358)
chr8 (435-481)||(18935053-18935099)
chr8 (439-493)||(18935403-18935457)
chr8 (436-481)||(3016048-3016093)
chr8 (432-493)||(9710213-9710274)
chr8 (436-493)||(16049832-16049889)
chr8 (436-493)||(18548539-18548596)
chr8 (432-469)||(21445982-21446019)
chr8 (436-493)||(34687755-34687812)
chr8 (436-480)||(23871002-23871046)
chr8 (431-490)||(7645141-7645200)
chr8 (435-490)||(18429442-18429497)
chr8 (435-469)||(34439602-34439636)
chr8 (438-495)||(3111463-3111520)
chr8 (429-493)||(7644774-7644837)
[»] chr2 (22 HSPs)
chr2 (435-481)||(43971880-43971926)
chr2 (438-493)||(26845536-26845591)
chr2 (435-493)||(14473506-14473564)
chr2 (435-481)||(32622218-32622264)
chr2 (436-493)||(24015813-24015869)
chr2 (436-493)||(32622543-32622600)
chr2 (436-480)||(36122064-36122108)
chr2 (430-493)||(3217280-3217343)
chr2 (440-487)||(10307616-10307663)
chr2 (435-490)||(13140620-13140675)
chr2 (435-493)||(15988013-15988069)
chr2 (435-493)||(13140290-13140348)
chr2 (435-481)||(14424239-14424285)
chr2 (435-469)||(27956725-27956759)
chr2 (431-493)||(29526592-29526654)
chr2 (435-493)||(29526948-29527006)
chr2 (435-493)||(38573290-38573348)
chr2 (435-469)||(39060308-39060342)
chr2 (435-481)||(43513925-43513971)
chr2 (436-493)||(6795526-6795583)
chr2 (436-481)||(43531929-43531974)
chr2 (437-493)||(36006263-36006319)
[»] scaffold0548 (1 HSPs)
scaffold0548 (430-493)||(3386-3449)
[»] chr3 (6 HSPs)
chr3 (434-493)||(33241845-33241904)
chr3 (435-493)||(33419896-33419954)
chr3 (432-490)||(37285905-37285963)
chr3 (435-481)||(48618848-48618894)
chr3 (436-493)||(54111417-54111474)
chr3 (436-469)||(54341204-54341237)
[»] scaffold0015 (1 HSPs)
scaffold0015 (435-481)||(47442-47488)
[»] chr6 (10 HSPs)
chr6 (436-481)||(22793634-22793679)
chr6 (435-493)||(17342888-17342946)
chr6 (435-493)||(22793301-22793359)
chr6 (435-484)||(10567824-10567873)
chr6 (426-481)||(34829572-34829627)
chr6 (435-493)||(11122255-11122313)
chr6 (435-481)||(34829922-34829968)
chr6 (436-481)||(28645269-28645314)
chr6 (436-493)||(32629064-32629121)
chr6 (433-493)||(6273615-6273675)
[»] chr5 (6 HSPs)
chr5 (430-493)||(33992330-33992393)
chr5 (435-493)||(33992690-33992748)
chr5 (436-493)||(16642751-16642808)
chr5 (436-493)||(25508159-25508216)
chr5 (436-490)||(19328409-19328463)
chr5 (435-493)||(19935434-19935492)
[»] scaffold0400 (1 HSPs)
scaffold0400 (435-481)||(9939-9985)
[»] scaffold0365 (1 HSPs)
scaffold0365 (435-481)||(10582-10628)
[»] scaffold0056 (2 HSPs)
scaffold0056 (435-469)||(63102-63136)
scaffold0056 (429-481)||(62720-62772)
[»] scaffold0045 (1 HSPs)
scaffold0045 (435-484)||(29610-29659)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 490 - 615
Target Start/End: Complemental strand, 41280035 - 41279910
Alignment:
Q  490 tgttaaaggaaataaaattagtcaaagaaatcaacatttaatataattaacagtattcatttgtaattatatgattgtaatattgtcataattattgtat 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41280035 tgttaaaggaaataaaattagtcaaagaaatcaacatttaatataattaacagtattcatttgtaattatatgattgtaatattgtcataattattgtat 41279936  T
Q  590 cccttagacacctcattttgtctgtg 615  Q
    ||||||||||||||||||||||||||    
T  41279935 cccttagacacctcattttgtctgtg 41279910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 490 - 615
Target Start/End: Complemental strand, 41287091 - 41286966
Alignment:
Q  490 tgttaaaggaaataaaattagtcaaagaaatcaacatttaatataattaacagtattcatttgtaattatatgattgtaatattgtcataattattgtat 589  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41287091 tgttaaagaaaataaaattagtcaaagaaatcaacatttaatataattaacagtattcatttgtaattatatgattgtaatattgtcataattattgtat 41286992  T
Q  590 cccttagacacctcattttgtctgtg 615  Q
    ||||||||||||||||||||||||||    
T  41286991 cccttagacacctcattttgtctgtg 41286966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 424 - 493
Target Start/End: Original strand, 7460560 - 7460629
Alignment:
Q  424 ttaataaaagacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||| |||||| |||||| |||||||| ||||||||||||||||||  |||||||||||||| |||||||    
T  7460560 ttaaaaaaagatttaatttcatgtttgatcccttatgtttattttagttttcaagttgatcccttatgtt 7460629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 24185670 - 24185727
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||||||||||| ||  ||||||||||| ||||||||||| |||||||||||    
T  24185670 ttaattgcatgtttggtcactcgtgtttattttaggtttcaagttggtcctttatgtt 24185727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 24188282 - 24188224
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||||||||| || ||||||||||| ||| ||||||||||| ||| |||||||    
T  24188282 cttaattgcatgtttgatcgcttatgtttatattaggtttcaagttggtcccttatgtt 24188224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 481
Target Start/End: Complemental strand, 7460953 - 7460908
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||    
T  7460953 ttaattgcatgtttgatcccttatgtttattttagttttcaagttg 7460908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 43511262 - 43511205
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||| ||||||| || |||||||||||||||||||| ||| ||||| ||||||||    
T  43511262 ttaattgtatgtttgatctcttatgtttattttaagttttaagatgatcttttatgtt 43511205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 493
Target Start/End: Original strand, 43510878 - 43510938
Alignment:
Q  433 gacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||| ||||||||||| ||||||||||||| |||||| ||||| || | |||||||    
T  43510878 gacttaattacatgtttggtctcttatgtttatttcaagttttaagttaattcattatgtt 43510938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 481
Target Start/End: Original strand, 17813971 - 17814022
Alignment:
Q  430 aaagacttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    |||| ||||||| |||||||| || ||||||||||||||| |||||||||||    
T  17813971 aaaggcttaattccatgtttgatctcttatgtttattttaggtttcaagttg 17814022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 469
Target Start/End: Original strand, 22566303 - 22566337
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttatttta 469  Q
    |||||||||||||||| ||||||||||||||||||    
T  22566303 cttaattgcatgtttgatcccttatgtttatttta 22566337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Original strand, 6376375 - 6376424
Alignment:
Q  444 atgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||| |||||||||||||| |||| |||||| | |||||||||    
T  6376375 atgtttggtcctttatgtttattttaggttttaagttggttctttatgtt 6376424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 6376771 - 6376714
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||| ||||| ||| |||||||||||||| |||| |||||| || ||||||||    
T  6376771 ttaattgcaagtttgatccgttatgtttattttaggttttaagttggtcatttatgtt 6376714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 481
Target Start/End: Complemental strand, 10018005 - 10017960
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    ||||||| |||||||||| ||||||||||||||| |||| ||||||    
T  10018005 ttaattgtatgtttggtctcttatgtttattttaggttttaagttg 10017960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 34535695 - 34535728
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttatttta 469  Q
    ||||||||||||||| ||||||||||||||||||    
T  34535695 ttaattgcatgtttgatcccttatgtttatttta 34535728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 487
Target Start/End: Complemental strand, 36469946 - 36469895
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctt 487  Q
    |||||||||||||||| || |||||||||||||| |||||||| ||| |||||    
T  36469946 cttaattgcatgtttgatctcttatgtttatttt-agtttcaaattggtcctt 36469895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 8e-38; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 501 - 613
Target Start/End: Complemental strand, 19524492 - 19524380
Alignment:
Q  501 ataaaattagtcaaagaaatcaacatttaatataattaacagtattcatttgtaattatatgattgtaatattgtcataattattgtatcccttagacac 600  Q
    ||||| ||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |     
T  19524492 ataaagttagtcaaagatatcaacattttatataattaacaatattcatttgtaattatatgattgtagtattgtcataattattgcatcccttagatag 19524393  T
Q  601 ctcattttgtctg 613  Q
    |||||||||||||    
T  19524392 ctcattttgtctg 19524380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 426 - 493
Target Start/End: Complemental strand, 45505481 - 45505414
Alignment:
Q  426 aataaaagacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||| |||||||||||||||||| ||||||||||||||||||  |||||||||| ||| |||||||    
T  45505481 aataaatgacttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgtt 45505414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 429 - 493
Target Start/End: Original strand, 17524198 - 17524262
Alignment:
Q  429 aaaagacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||| |||||||||||||||| ||||||||||||||||||  |||||||||| ||| |||||||    
T  17524198 aaaaggcttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgtt 17524262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 493
Target Start/End: Complemental strand, 11306671 - 11306608
Alignment:
Q  430 aaagacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||| |||||||||||||||| ||||||||||||||||||  |||||||||| ||| |||||||    
T  11306671 aaaggcttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgtt 11306608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 18415099 - 18415041
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||| ||||||| ||||||||||||||||||  |||||||||||||||| |||||    
T  18415099 cttaattgtatgtttgatcccttatgtttattttagttttcaagttgatccttcatgtt 18415041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 31141679 - 31141737
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||| || ||||||||    
T  31141679 cttaattgcatgtttggtcccgtatgtttatcttaggtttcaagttggtcatttatgtt 31141737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 31143811 - 31143753
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||||||||||  ||||||||||| |||||| |||||||| |||||||    
T  31143811 cttaattgcatgtttggtccctggtgtttattttaggtttcatgttgatcccttatgtt 31143753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 49983793 - 49983851
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||||||||||| || ||||||||  |||||||||| |||||||||||    
T  49983793 cttaattgcatgtttggtcccttgtgcttattttagatttcaagttggtcctttatgtt 49983851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 493
Target Start/End: Complemental strand, 48846128 - 48846068
Alignment:
Q  433 gacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||||||||||| ||||||||||||||||||  ||| |||||| ||| |||||||    
T  48846128 gacttaattgcatgtttgatcccttatgtttattttactttttaagttggtcccttatgtt 48846068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 438 - 481
Target Start/End: Complemental strand, 4592765 - 4592722
Alignment:
Q  438 aattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    |||||||||||||||||||||||||||||||| |||| ||||||    
T  4592765 aattgcatgtttggtcccttatgtttattttaggttttaagttg 4592722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 490
Target Start/End: Original strand, 43913391 - 43913449
Alignment:
Q  432 agacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttat 490  Q
    ||||||||||||||||||| ||||||||||||||||||  ||| |||||| ||| ||||    
T  43913391 agacttaattgcatgtttgatcccttatgtttattttagtttttaagttggtcccttat 43913449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 49984211 - 49984165
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    |||||||||||||||| |||||||||||||||||| |||||| ||||    
T  49984211 cttaattgcatgtttgatcccttatgtttattttaggtttcatgttg 49984165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 424 - 485
Target Start/End: Original strand, 46397295 - 46397356
Alignment:
Q  424 ttaataaaagacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcc 485  Q
    |||| |||||||||||||||||||||| |||  ||| ||||||||| ||||| |||||||||    
T  46397295 ttaaaaaaagacttaattgcatgtttgatcctatatatttattttaggtttcgagttgatcc 46397356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 52485343 - 52485400
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||| ||| ||||||||||||||  ||| |||||||||| |||||||    
T  52485343 ttaattgcatgtttgatccattatgtttattttagtttttaagttgatcccttatgtt 52485400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 493
Target Start/End: Original strand, 24671950 - 24672010
Alignment:
Q  433 gacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||| || |||||||||||| ||||||||||  ||| ||||||||| ||||||||    
T  24671950 gacttaattgtatatttggtcccttaagtttattttagattttaagttgatcatttatgtt 24672010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 4416476 - 4416534
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||||||||| |||||||  |||||||||  ||| |||||||||| |||||||    
T  4416476 cttaattgcatgtttgatcccttacatttattttagtttttaagttgatcccttatgtt 4416534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 5665856 - 5665798
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||| || || ||||||||||||||| ||||||||||  ||| |||||||    
T  5665856 cttaattgcatgtctgatctcttatgtttattttaggtttcaagtttgtcccttatgtt 5665798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 5688806 - 5688760
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    ||||||| |||||||||||||| ||||||| ||||||||| ||||||    
T  5688806 cttaatttcatgtttggtccctaatgtttactttaagttttaagttg 5688760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 485
Target Start/End: Complemental strand, 37724808 - 37724758
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcc 485  Q
    |||||||||||||||| || |||||||||||||||  ||| ||||||||||    
T  37724808 cttaattgcatgtttgatctcttatgtttattttagtttttaagttgatcc 37724758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 469
Target Start/End: Complemental strand, 45170928 - 45170894
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttatttta 469  Q
    |||||||||||||||| ||||||||||||||||||    
T  45170928 cttaattgcatgtttgatcccttatgtttatttta 45170894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 469
Target Start/End: Original strand, 45505059 - 45505093
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttatttta 469  Q
    |||||||||||||||| ||||||||||||||||||    
T  45505059 cttaattgcatgtttgatcccttatgtttatttta 45505093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 4416889 - 4416832
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||| || |||||||||||||||  ||| |||||| ||| |||||||    
T  4416889 ttaattgcatgtttgatctcttatgtttattttagtttttaagttggtcccttatgtt 4416832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 36752860 - 36752917
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||| |||||||||| ||||||||||||||||||| ||| || ||| ||||| |||||    
T  36752860 ttaaatgcatgtttgatcccttatgtttattttaatttttaaattggtccttcatgtt 36752917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 433 - 493
Target Start/End: Original strand, 20268892 - 20268952
Alignment:
Q  433 gacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||||||||  | |||||||||||||  ||| |||||| ||| |||||||    
T  20268892 gacttaattgcatgtttggtttcgtatgtttattttagattttaagttggtcccttatgtt 20268952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 433 - 493
Target Start/End: Complemental strand, 48171851 - 48171791
Alignment:
Q  433 gacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  48171851 gacttaattgcatgtttggtcccttatgtttattttaggtttcaagttggtcctttatgtt 48171791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 433 - 493
Target Start/End: Original strand, 48171440 - 48171500
Alignment:
Q  433 gacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||||||||||| |||||||||||||||||| |||||| |||| ||| |||||||    
T  48171440 gacttaattgcatgtttgatcccttatgtttattttaggtttcaggttggtcccttatgtt 48171500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 432 - 481
Target Start/End: Original strand, 22792287 - 22792336
Alignment:
Q  432 agacttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    |||||||||||||| ||||||||| |||||||||||||||||| ||||||    
T  22792287 agacttaattgcatatttggtcccatatgtttattttaagttttaagttg 22792336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 428 - 477
Target Start/End: Original strand, 25622601 - 25622650
Alignment:
Q  428 taaaagacttaattgcatgtttggtcccttatgtttattttaagtttcaa 477  Q
    |||||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  25622601 taaaaggcttaattgcatgtttagtcccttatgtttattttaggtttcaa 25622650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 435 - 490
Target Start/End: Original strand, 42604630 - 42604685
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttat 490  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||| | ||||||    
T  42604630 cttaattgcatgtttgatcccttatgtttattttagttttcaagttggtactttat 42604685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 19987334 - 19987392
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||||||||| |||| |||||||||||||  ||| |||||| |||||||||||    
T  19987334 cttaattgcatgtttgatcccatatgtttattttagtttttaagttgttcctttatgtt 19987392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 42605042 - 42604996
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    |||||||||||||||| ||||||||||||||||||  ||||||||||    
T  42605042 cttaattgcatgtttgatcccttatgtttattttagttttcaagttg 42604996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 432 - 481
Target Start/End: Original strand, 142808 - 142857
Alignment:
Q  432 agacttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    |||||||||||||||||| ||||||||||| ||||||| |||| ||||||    
T  142808 agacttaattgcatgttttgtcccttatgtgtattttaggttttaagttg 142857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 435 - 480
Target Start/End: Original strand, 6043448 - 6043493
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagtt 480  Q
    ||||||||||||||||||||||||| ||||||||| |||| |||||    
T  6043448 cttaattgcatgtttggtcccttatatttattttaggttttaagtt 6043493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 33460297 - 33460240
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||| || |||||||||||||||  |||||||||| ||| |||||||    
T  33460297 ttaattgcatgtttgatctcttatgtttattttagttttcaagttggtcccttatgtt 33460240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 34517965 - 34518022
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||| ||||||||||||||||||  ||| |||||| ||| |||||||    
T  34517965 ttaattgcatgtttgatcccttatgtttattttagtttttaagttggtccattatgtt 34518022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 435 - 491
Target Start/End: Complemental strand, 143226 - 143170
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatg 491  Q
    |||||||| ||||||| |||||||||||||||||| |||| |||||| |||| ||||    
T  143226 cttaattgtatgtttgatcccttatgtttattttaggttttaagttggtcctatatg 143170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 469
Target Start/End: Complemental strand, 35795731 - 35795695
Alignment:
Q  433 gacttaattgcatgtttggtcccttatgtttatttta 469  Q
    |||||||||||||||||||||| ||||||||||||||    
T  35795731 gacttaattgcatgtttggtcctttatgtttatttta 35795695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 481
Target Start/End: Original strand, 8718402 - 8718453
Alignment:
Q  430 aaagacttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    |||| ||||||||||||||||||| ||| ||||||||||| |||| ||||||    
T  8718402 aaaggcttaattgcatgtttggtctcttgtgtttattttaggttttaagttg 8718453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 490
Target Start/End: Complemental strand, 8718609 - 8718554
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttat 490  Q
    |||||||||||||||| |||| ||||||||||||| |||| |||||| ||| ||||    
T  8718609 cttaattgcatgtttgatcccatatgtttattttaggttttaagttggtcccttat 8718554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 481
Target Start/End: Original strand, 35795304 - 35795359
Alignment:
Q  426 aataaaagacttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    |||| ||| |||||||||||||||| || |||||||||||||||  ||||||||||    
T  35795304 aatataaggcttaattgcatgtttgatctcttatgtttattttagatttcaagttg 35795359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 31873011 - 31872965
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    ||||||||||| |||| ||||||||||||||||||  ||||||||||    
T  31873011 cttaattgcatatttgatcccttatgtttattttagttttcaagttg 31872965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 33459895 - 33459953
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||||| ||| ||||||||||||||||||  |||||||||  ||| |||||||    
T  33459895 cttaattgcatgcttgatcccttatgtttattttagttttcaagttagtcccttatgtt 33459953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 469
Target Start/End: Complemental strand, 37245981 - 37245947
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttatttta 469  Q
    |||||||||||||||| ||||||||||||||||||    
T  37245981 cttaattgcatgtttgatcccttatgtttatttta 37245947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 14419821 - 14419878
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||| ||| || |||||||||||||||| |||| |||||| ||| |||||||    
T  14419821 ttaattgcatctttagttccttatgtttattttaggttttaagttggtcccttatgtt 14419878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 474
Target Start/End: Complemental strand, 14420194 - 14420153
Alignment:
Q  433 gacttaattgcatgtttggtcccttatgtttattttaagttt 474  Q
    |||||||||||||||||| | |||||||||||||||| ||||    
T  14420194 gacttaattgcatgtttgattccttatgtttattttaggttt 14420153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 481
Target Start/End: Complemental strand, 18519701 - 18519656
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    ||||||||||||||| || |||||||||||||||  ||||||||||    
T  18519701 ttaattgcatgtttgatctcttatgtttattttagttttcaagttg 18519656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 481
Target Start/End: Complemental strand, 22792689 - 22792644
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    ||||||| |||||||||||| ||||||||||||| |||| ||||||    
T  22792689 ttaattgtatgtttggtcccatatgtttattttaggttttaagttg 22792644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 31872709 - 31872742
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttatttta 469  Q
    ||||||||||||||| ||||||||||||||||||    
T  31872709 ttaattgcatgtttgatcccttatgtttatttta 31872742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 467
Target Start/End: Complemental strand, 3075324 - 3075292
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattt 467  Q
    |||||||||||||||| ||||||||||||||||    
T  3075324 cttaattgcatgtttgatcccttatgtttattt 3075292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 4623513 - 4623455
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  4623513 cttaattgcatgtttgatcccttatgtttattttagttttcaagttgatcctttatgtt 4623455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 429 - 493
Target Start/End: Original strand, 4623063 - 4623127
Alignment:
Q  429 aaaagacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||| || ||||||| |||||||    
T  4623063 aaaagacttaattgcatgtttgatcccttatgtttattttagtttttaaattgatcccttatgtt 4623127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 7535300 - 7535358
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||| || ||||||||    
T  7535300 cttaattgcatgtttggtctcttatgtttattttacgttttaagttggtcttttatgtt 7535358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 435 - 481
Target Start/End: Original strand, 18935053 - 18935099
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||    
T  18935053 cttaattgcatgtttggtctcttatgtttattttaagttttaagttg 18935099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 439 - 493
Target Start/End: Complemental strand, 18935457 - 18935403
Alignment:
Q  439 attgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||||||||||||||||||| |||||| |||| ||| |||||||    
T  18935457 attgcatgtttggtcccttatgtttattttaggtttcatgttggtcccttatgtt 18935403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 481
Target Start/End: Complemental strand, 3016093 - 3016048
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||    
T  3016093 ttaattgcatgtttggtcccttaagtttattttaggtttcaagttg 3016048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 432 - 493
Target Start/End: Original strand, 9710213 - 9710274
Alignment:
Q  432 agacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||||||| ||||||||||||||||||  ||| |||||| ||| |||||||    
T  9710213 agacttaattgcatgtttgatcccttatgtttattttagtttttaagttggtcccttatgtt 9710274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 16049889 - 16049832
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||| ||||||||||||||||||  |||||||||| ||| |||||||    
T  16049889 ttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgtt 16049832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 18548539 - 18548596
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||| | |||||||||||||||| |||| |||||| | |||||||||    
T  18548539 ttaattgcatgtttgattccttatgtttattttaggttttaagttggtactttatgtt 18548596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 432 - 469
Target Start/End: Original strand, 21445982 - 21446019
Alignment:
Q  432 agacttaattgcatgtttggtcccttatgtttatttta 469  Q
    |||||||||||||||||||||||||||| |||||||||    
T  21445982 agacttaattgcatgtttggtcccttatatttatttta 21446019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 34687755 - 34687812
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||||||||  ||||||||||||||||| |||| |||||| | |||||||||    
T  34687755 ttaattgcatgtttgaccccttatgtttattttaggttttaagttggttctttatgtt 34687812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 23871002 - 23871046
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagtt 480  Q
    |||||||| ||||||||| |||||||||||||| |||||||||||    
T  23871002 ttaattgcttgtttggtctcttatgtttattttgagtttcaagtt 23871046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 490
Target Start/End: Complemental strand, 7645200 - 7645141
Alignment:
Q  431 aagacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttat 490  Q
    |||||||||| ||||||||| ||||||||||||||||||  ||| |||||  ||||||||    
T  7645200 aagacttaatcgcatgtttgatcccttatgtttattttagtttttaagttagtcctttat 7645141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 490
Target Start/End: Original strand, 18429442 - 18429497
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttat 490  Q
    |||||||||||||||| || |||||||||||||||  |||||||||| ||| ||||    
T  18429442 cttaattgcatgtttgatctcttatgtttattttagttttcaagttggtcccttat 18429497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 469
Target Start/End: Complemental strand, 34439636 - 34439602
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttatttta 469  Q
    |||||||||||||||| ||||||||||||||||||    
T  34439636 cttaattgcatgtttgatcccttatgtttatttta 34439602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 495
Target Start/End: Original strand, 3111463 - 3111520
Alignment:
Q  438 aattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgttaa 495  Q
    ||||||||| |||||||| || |||||||||| ||||||||||| |||| || |||||    
T  3111463 aattgcatgattggtcccctacgtttattttaggtttcaagttggtcctctaagttaa 3111520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 429 - 493
Target Start/End: Original strand, 7644774 - 7644837
Alignment:
Q  429 aaaagacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||| |||||||||||||||| ||| ||||||||||||||  ||| |||||| ||| |||||||    
T  7644774 aaaaggcttaattgcatgtttgatcc-ttatgtttattttagtttttaagttggtcccttatgtt 7644837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 43971926 - 43971880
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  43971926 cttaattgcatgtttggtcccttatgtttattttaggtttcaagttg 43971880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 493
Target Start/End: Complemental strand, 26845591 - 26845536
Alignment:
Q  438 aattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||||||||||||||||||||||||| |||| |||||| ||| |||||||    
T  26845591 aattgcatgtttggtcccttatgtttattttaggttttaagttggtcccttatgtt 26845536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 14473506 - 14473564
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||||||| ||| ||||||||||||||||  ||||| ||| |||||||    
T  14473506 cttaattgcatgtttggtcgcttttgtttattttaagttttgagttggtcccttatgtt 14473564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 481
Target Start/End: Original strand, 32622218 - 32622264
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    |||||||||||||||| ||||||||||||||||||  ||||||||||    
T  32622218 cttaattgcatgtttgatcccttatgtttattttagttttcaagttg 32622264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 24015813 - 24015869
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||  ||||||||||||||||||  |||||||||||||| |||||||    
T  24015813 ttaattgcatgttta-tcccttatgtttattttagttttcaagttgatcccttatgtt 24015869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 32622600 - 32622543
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||| ||||||||||||||||||  ||| |||||| ||||| |||||    
T  32622600 ttaattgcatgtttgatcccttatgtttattttagtttttaagttggtccttcatgtt 32622543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 480
Target Start/End: Complemental strand, 36122108 - 36122064
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagtt 480  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||||    
T  36122108 ttaattgcatgtttggtcccttacgtttatattaggtttcaagtt 36122064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 493
Target Start/End: Original strand, 3217280 - 3217343
Alignment:
Q  430 aaagacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||| ||||||||||||||||||||||| ||| ||| ||| |||||| |||| ||| |||||||    
T  3217280 aaaggcttaattgcatgtttggtcccttgtgtatatcttaggtttcatgttggtcccttatgtt 3217343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 487
Target Start/End: Complemental strand, 10307663 - 10307616
Alignment:
Q  440 ttgcatgtttggtcccttatgtttattttaagtttcaagttgatcctt 487  Q
    ||||||||||||| |||||||||||||||| |||| |||||| |||||    
T  10307663 ttgcatgtttggtgccttatgtttattttatgtttgaagttggtcctt 10307616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 490
Target Start/End: Complemental strand, 13140675 - 13140620
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttat 490  Q
    ||||||||||||||||||||||| |||||||||||  ||| |||||| || |||||    
T  13140675 cttaattgcatgtttggtcccttgtgtttattttagattttaagttggtcatttat 13140620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 15988013 - 15988069
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||||| | |||||||||||||  |||||||||||| ||| |||||||    
T  15988013 cttaattgcatgtttggccacttatgtttattt--agtttcaagttggtcccttatgtt 15988069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 13140290 - 13140348
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||| ||||||||||| | |||||||||||||||| |||| |||||| || ||||||||    
T  13140290 cttacttgcatgtttgatgccttatgtttattttaggttttaagttggtcttttatgtt 13140348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 481
Target Start/End: Original strand, 14424239 - 14424285
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    ||||||||||||||| | | ||||||||||||||| |||||||||||    
T  14424239 cttaattgcatgtttagcctcttatgtttattttaggtttcaagttg 14424285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 469
Target Start/End: Original strand, 27956725 - 27956759
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttatttta 469  Q
    |||||||||||||||| ||||||||||||||||||    
T  27956725 cttaattgcatgtttgatcccttatgtttatttta 27956759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 493
Target Start/End: Original strand, 29526592 - 29526654
Alignment:
Q  431 aagacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||||||||||| | ||| ||||||||||||||  |||||| ||| ||| |||||||    
T  29526592 aagacttaattgcatgttggatcctttatgtttattttagttttcaatttggtcccttatgtt 29526654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 29527006 - 29526948
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||| ||||||  ||||||||||||||||||| ||| |||||| ||| |||||||    
T  29527006 cttaattgtatgtttaatcccttatgtttattttaatttttaagttggtccattatgtt 29526948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 38573348 - 38573290
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||| |||| ||||||||||||||  ||| |||||||||  |||||||    
T  38573348 cttaattgcatgttttgtcctttatgtttattttagtttttaagttgatcaattatgtt 38573290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 469
Target Start/End: Original strand, 39060308 - 39060342
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttatttta 469  Q
    |||||||||||||||| ||||||||||||||||||    
T  39060308 cttaattgcatgtttgatcccttatgtttatttta 39060342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 43513971 - 43513925
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    |||| ||||||||||| |||||||||||||| ||| |||||||||||    
T  43513971 cttacttgcatgtttgatcccttatgtttatattaggtttcaagttg 43513925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 6795583 - 6795526
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||| |||| ||| ||||||||| |||| |||||| ||| |||||||    
T  6795583 ttaattgcatgtttgatcccctatatttattttaggttttaagttggtccattatgtt 6795526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 481
Target Start/End: Original strand, 43531929 - 43531974
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    ||||||||||| | ||||||||| |||||||||| |||||||||||    
T  43531929 ttaattgcatgatcggtcccttacgtttattttaggtttcaagttg 43531974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 493
Target Start/End: Complemental strand, 36006319 - 36006263
Alignment:
Q  437 taattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||| ||| | |||||| |||||||||||||| |||||| || ||||||||    
T  36006319 taattgcatgattgattccttatttttattttaagttttaagttggtcatttatgtt 36006263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 493
Target Start/End: Complemental strand, 3449 - 3386
Alignment:
Q  430 aaagacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||| |||||||||||||||| ||||||||||||||||||  |||||||||| ||| |||||||    
T  3449 aaaggcttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgtt 3386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 434 - 493
Target Start/End: Original strand, 33241845 - 33241904
Alignment:
Q  434 acttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||||||| ||| |||||||    
T  33241845 acttaattgcatggttggtcccttaagtttattttaggtttcaagttgttcccttatgtt 33241904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 33419954 - 33419896
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||||||||| ||||||||||||||||||  ||| |||||| ||| |||||||    
T  33419954 cttaattgcatgtttgatcccttatgtttattttactttttaagttggtcccttatgtt 33419896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 432 - 490
Target Start/End: Complemental strand, 37285963 - 37285905
Alignment:
Q  432 agacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttat 490  Q
    |||||||||||||||||| || || ||||||||||||| |||| |||||| ||| ||||    
T  37285963 agacttaattgcatgtttagttccctatgtttattttaggttttaagttggtcccttat 37285905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 48618894 - 48618848
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    |||||||||||||||| |||||||| ||||||||| | |||||||||    
T  48618894 cttaattgcatgtttgatcccttatatttattttaggcttcaagttg 48618848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 54111417 - 54111474
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||| |||||||| | |||||||  ||| | ||||||||||||||||    
T  54111417 ttaattgcatgtttgatcccttatatgtattttacattttatgttgatcctttatgtt 54111474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 54341204 - 54341237
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttatttta 469  Q
    ||||||||||||||| ||||||||||||||||||    
T  54341204 ttaattgcatgtttgatcccttatgtttatttta 54341237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 47488 - 47442
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  47488 cttaattgcatgtttggtcccttatgtttattttaggttttaagttg 47442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 481
Target Start/End: Complemental strand, 22793679 - 22793634
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||    
T  22793679 ttaattgcatgtttgatcccttatgtttattttaggtttcaagttg 22793634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 17342888 - 17342946
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||||||||  |||| ||||||||||||| ||||||||||| ||| |||||||    
T  17342888 cttaattgcatgtttaatcccgtatgtttattttaggtttcaagttggtcccttatgtt 17342946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 22793301 - 22793359
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||| || ||||| ||||||||||||||||| ||||||||||| ||| |||||||    
T  22793301 cttaattggatatttggccccttatgtttattttaggtttcaagttggtcccttatgtt 22793359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 435 - 484
Target Start/End: Complemental strand, 10567873 - 10567824
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatc 484  Q
    ||||||||||| |||| ||||||||||||||||||| |||||| ||||||    
T  10567873 cttaattgcatatttgatcccttatgtttattttaattttcaaattgatc 10567824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 481
Target Start/End: Original strand, 34829572 - 34829627
Alignment:
Q  426 aataaaagacttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    ||||||||  ||||||||| ||||| ||| ||||||||||||||||||| ||||||    
T  34829572 aataaaaggtttaattgcaggtttgatcctttatgtttattttaagttttaagttg 34829627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 11122313 - 11122255
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||| ||||||| |||||||||||||||||| |||  |||||| || ||||||||    
T  11122313 cttaattgtatgtttgatcccttatgtttattttaggttgtaagttggtcatttatgtt 11122255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 34829968 - 34829922
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    |||||||||||||||| || ||||||||||||||| |||| ||||||    
T  34829968 cttaattgcatgtttgatctcttatgtttattttaggttttaagttg 34829922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 481
Target Start/End: Original strand, 28645269 - 28645314
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    |||||||||||||||||||||||   |||||||| |||||||||||    
T  28645269 ttaattgcatgtttggtcccttacacttattttatgtttcaagttg 28645314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 32629064 - 32629121
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||| |||||||| |||||||||||||||||| |||| |||||   ||||||||||    
T  32629064 ttaattacatgtttgatcccttatgtttattttaggttttaagttagacctttatgtt 32629121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 433 - 493
Target Start/End: Original strand, 6273615 - 6273675
Alignment:
Q  433 gacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||| ||||||||||||  ||  |||||||||||||| ||||||||||| | |||||||||    
T  6273615 gactaaattgcatgtttaatctattatgtttattttacgtttcaagttggttctttatgtt 6273675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 430 - 493
Target Start/End: Original strand, 33992330 - 33992393
Alignment:
Q  430 aaagacttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||| |||||||||||||||| ||||||||||||||||||  |||||||||  ||| |||||||    
T  33992330 aaaggcttaattgcatgtttgatcccttatgtttattttagttttcaagttcgtcccttatgtt 33992393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 33992748 - 33992690
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||||||||| ||||||||||||||||||  ||| || ||| |||||||||||    
T  33992748 cttaattgcatgtttgatcccttatgtttattttagtttttaaattggtcctttatgtt 33992690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 16642751 - 16642808
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||| ||||| |||||||||||||||||| |||| |||||| ||| |||||||    
T  16642751 ttaattgcaagtttgatcccttatgtttattttaggttttaagttggtcccttatgtt 16642808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 25508216 - 25508159
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    ||||||||||||||||||||||| ||| |||||| |||| |||||| ||| |||||||    
T  25508216 ttaattgcatgtttggtcccttaagttgattttaggttttaagttgctcccttatgtt 25508159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 490
Target Start/End: Original strand, 19328409 - 19328463
Alignment:
Q  436 ttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttat 490  Q
    ||||||||||| ||| ||||||||||||||||||  ||| |||||| ||||||||    
T  19328409 ttaattgcatgattgatcccttatgtttattttagtttttaagttggtcctttat 19328463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 19935434 - 19935492
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatcctttatgtt 493  Q
    |||||||||||||| |||| ||||||||||||||  |||| |||||| ||| |||||||    
T  19935434 cttaattgcatgttgggtctcttatgtttatttttggttttaagttggtccattatgtt 19935492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 9985 - 9939
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    |||||||||||||||| || ||||||||||||||| |||| ||||||    
T  9985 cttaattgcatgtttgatctcttatgtttattttaggttttaagttg 9939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 10628 - 10582
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    |||||||||||||||| || ||||||||||||||| |||| ||||||    
T  10628 cttaattgcatgtttgatctcttatgtttattttaggttttaagttg 10582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 469
Target Start/End: Complemental strand, 63136 - 63102
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttatttta 469  Q
    |||||||||||||||| ||||||||||||||||||    
T  63136 cttaattgcatgtttgatcccttatgtttatttta 63102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 62720 - 62772
Alignment:
Q  429 aaaagacttaattgcatgtttggtcccttatgtttattttaagtttcaagttg 481  Q
    ||||| |||||||||||| ||| |||||||| ||||||| || ||||||||||    
T  62720 aaaaggcttaattgcatgcttgatcccttatatttatttcaattttcaagttg 62772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 29610 - 29659
Alignment:
Q  435 cttaattgcatgtttggtcccttatgtttattttaagtttcaagttgatc 484  Q
    ||||||| |||||||| || |||||||||||||||  |||||||||||||    
T  29610 cttaattacatgtttgatctcttatgtttattttagttttcaagttgatc 29659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University