View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10162_low_22 (Length: 252)

Name: NF10162_low_22
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10162_low_22
NF10162_low_22
[»] chr2 (17 HSPs)
chr2 (18-117)||(28860016-28860115)
chr2 (159-252)||(43041036-43041129)
chr2 (164-252)||(15233757-15233845)
chr2 (160-252)||(31296081-31296173)
chr2 (161-249)||(35793096-35793184)
chr2 (161-252)||(41252414-41252505)
chr2 (162-252)||(44104743-44104833)
chr2 (162-252)||(41642891-41642984)
chr2 (162-231)||(10118660-10118729)
chr2 (101-150)||(28860139-28860188)
chr2 (177-249)||(31903569-31903641)
chr2 (177-229)||(21727684-21727736)
chr2 (161-231)||(36963130-36963200)
chr2 (159-195)||(10112336-10112372)
chr2 (162-195)||(15233999-15234032)
chr2 (162-195)||(43040849-43040882)
chr2 (162-194)||(44104546-44104578)
[»] chr6 (16 HSPs)
chr6 (161-252)||(27312303-27312394)
chr6 (161-252)||(32274433-32274524)
chr6 (160-252)||(12174698-12174790)
chr6 (164-252)||(8504889-8504977)
chr6 (169-252)||(5003889-5003972)
chr6 (161-251)||(7156413-7156503)
chr6 (162-252)||(31171177-31171267)
chr6 (162-252)||(18741947-18742037)
chr6 (161-252)||(29452729-29452821)
chr6 (162-210)||(29302500-29302548)
chr6 (161-195)||(27312113-27312147)
chr6 (162-195)||(8504733-8504766)
chr6 (161-195)||(2543325-2543359)
chr6 (223-252)||(2543142-2543171)
chr6 (162-195)||(32274678-32274711)
chr6 (162-194)||(18742191-18742223)
[»] chr3 (34 HSPs)
chr3 (160-252)||(29371725-29371817)
chr3 (162-252)||(18996967-18997057)
chr3 (162-252)||(18999506-18999596)
chr3 (161-252)||(1352183-1352274)
chr3 (162-252)||(28228436-28228526)
chr3 (162-252)||(32677664-32677754)
chr3 (162-252)||(39528749-39528839)
chr3 (162-252)||(41349558-41349648)
chr3 (165-252)||(21974152-21974239)
chr3 (165-252)||(21996583-21996670)
chr3 (162-252)||(39807166-39807256)
chr3 (168-252)||(38855323-38855407)
chr3 (160-252)||(55365906-55365998)
chr3 (165-252)||(22157261-22157348)
chr3 (169-252)||(29014877-29014960)
chr3 (161-252)||(36738021-36738112)
chr3 (177-252)||(39518422-39518497)
chr3 (177-232)||(49041052-49041107)
chr3 (162-251)||(32839949-32840037)
chr3 (162-231)||(49319347-49319416)
chr3 (159-195)||(41349368-41349404)
chr3 (160-195)||(39518651-39518686)
chr3 (161-195)||(29014689-29014723)
chr3 (161-195)||(36737833-36737867)
chr3 (161-195)||(38855561-38855595)
chr3 (162-195)||(1351996-1352029)
chr3 (162-195)||(18997211-18997244)
chr3 (162-195)||(18999750-18999783)
chr3 (162-195)||(39528993-39529026)
chr3 (162-194)||(46878980-46879012)
chr3 (168-231)||(34667699-34667762)
chr3 (162-195)||(29371538-29371571)
chr3 (162-195)||(32677477-32677510)
chr3 (162-195)||(39806979-39807012)
[»] chr7 (32 HSPs)
chr7 (161-252)||(29427351-29427442)
chr7 (162-252)||(17904163-17904253)
chr7 (162-252)||(46467522-46467612)
chr7 (162-251)||(37179519-37179608)
chr7 (162-252)||(26770179-26770269)
chr7 (160-252)||(4405107-4405199)
chr7 (162-252)||(6389732-6389822)
chr7 (166-251)||(31503125-31503210)
chr7 (162-249)||(6387882-6387969)
chr7 (170-252)||(9876271-9876353)
chr7 (162-252)||(29891013-29891103)
chr7 (160-249)||(41922044-41922133)
chr7 (165-252)||(9332364-9332451)
chr7 (161-249)||(19523885-19523975)
chr7 (161-231)||(43701550-43701620)
chr7 (162-227)||(12252069-12252134)
chr7 (162-231)||(33379175-33379244)
chr7 (162-230)||(29722955-29723023)
chr7 (160-232)||(31858301-31858373)
chr7 (177-232)||(46689878-46689933)
chr7 (177-232)||(49011065-49011120)
chr7 (177-250)||(33974506-33974579)
chr7 (182-232)||(9215672-9215722)
chr7 (161-232)||(33915716-33915786)
chr7 (161-195)||(4405353-4405387)
chr7 (161-195)||(29890825-29890859)
chr7 (160-194)||(46467333-46467367)
chr7 (162-195)||(17904407-17904440)
chr7 (162-195)||(29723381-29723414)
chr7 (162-195)||(37179331-37179364)
chr7 (160-194)||(26770424-26770458)
chr7 (162-195)||(6387692-6387725)
[»] chr5 (23 HSPs)
chr5 (162-252)||(29874954-29875044)
chr5 (162-252)||(12399133-12399223)
chr5 (162-252)||(34208538-34208628)
chr5 (162-252)||(23090298-23090388)
chr5 (162-251)||(4145694-4145783)
chr5 (162-252)||(4695349-4695439)
chr5 (161-252)||(3077596-3077687)
chr5 (177-252)||(42757997-42758072)
chr5 (177-230)||(12096413-12096466)
chr5 (162-231)||(41610625-41610694)
chr5 (162-231)||(42793040-42793109)
chr5 (165-229)||(4434783-4434847)
chr5 (158-195)||(29875198-29875235)
chr5 (159-195)||(42793562-42793598)
chr5 (160-231)||(8718023-8718094)
chr5 (160-194)||(23090543-23090577)
chr5 (162-195)||(12398946-12398979)
chr5 (161-194)||(41610372-41610405)
chr5 (162-195)||(42757805-42757838)
chr5 (160-195)||(34208782-34208817)
chr5 (177-211)||(594328-594362)
chr5 (161-230)||(19574685-19574753)
chr5 (183-232)||(22528023-22528072)
[»] chr1 (25 HSPs)
chr1 (160-252)||(4817267-4817359)
chr1 (161-252)||(4055483-4055574)
chr1 (162-252)||(18126851-18126941)
chr1 (161-252)||(47669118-47669209)
chr1 (162-252)||(46220259-46220349)
chr1 (162-252)||(1236217-1236307)
chr1 (162-252)||(9831503-9831593)
chr1 (162-252)||(10737888-10737978)
chr1 (161-252)||(48564817-48564907)
chr1 (177-252)||(8889457-8889532)
chr1 (163-252)||(7414208-7414297)
chr1 (162-252)||(3384782-3384870)
chr1 (161-241)||(1749521-1749601)
chr1 (162-231)||(33020206-33020275)
chr1 (185-250)||(26842462-26842527)
chr1 (182-247)||(39241172-39241236)
chr1 (161-195)||(10737700-10737734)
chr1 (161-195)||(46220503-46220537)
chr1 (162-195)||(47669363-47669396)
chr1 (163-195)||(1236071-1236103)
chr1 (161-193)||(48565063-48565095)
chr1 (160-195)||(33023428-33023463)
chr1 (165-195)||(9831747-9831777)
chr1 (161-195)||(37875726-37875760)
chr1 (162-195)||(8889687-8889720)
[»] chr8 (23 HSPs)
chr8 (161-252)||(33837916-33838007)
chr8 (162-252)||(2508983-2509073)
chr8 (162-252)||(28378947-28379037)
chr8 (162-249)||(45334466-45334553)
chr8 (160-249)||(25106209-25106298)
chr8 (161-252)||(27793378-27793469)
chr8 (167-252)||(13469692-13469777)
chr8 (161-252)||(9739984-9740075)
chr8 (162-252)||(38495659-38495749)
chr8 (159-250)||(32183671-32183762)
chr8 (161-231)||(27024432-27024502)
chr8 (161-229)||(25978969-25979037)
chr8 (161-230)||(8235161-8235230)
chr8 (158-195)||(27027655-27027692)
chr8 (206-252)||(2626425-2626472)
chr8 (162-195)||(25106455-25106488)
chr8 (162-195)||(28379191-28379224)
chr8 (162-195)||(33837729-33837762)
chr8 (162-195)||(45334276-45334309)
chr8 (162-194)||(9740231-9740263)
chr8 (177-224)||(2626667-2626714)
chr8 (161-194)||(13469507-13469540)
chr8 (162-195)||(38495472-38495505)
[»] chr4 (19 HSPs)
chr4 (161-252)||(30469355-30469446)
chr4 (161-252)||(33288592-33288683)
chr4 (159-249)||(8955966-8956056)
chr4 (159-249)||(45590739-45590829)
chr4 (165-252)||(39481906-39481993)
chr4 (172-252)||(34334342-34334422)
chr4 (168-252)||(49162108-49162192)
chr4 (162-252)||(18835705-18835797)
chr4 (161-231)||(19256185-19256255)
chr4 (161-212)||(36016278-36016329)
chr4 (177-231)||(36968353-36968407)
chr4 (159-232)||(26025729-26025803)
chr4 (177-252)||(50774245-50774325)
chr4 (162-196)||(19257103-19257137)
chr4 (177-251)||(33109089-33109163)
chr4 (158-195)||(49162332-49162369)
chr4 (156-195)||(8955770-8955809)
chr4 (162-195)||(45590986-45591019)
chr4 (163-195)||(39482106-39482138)
[»] scaffold0103 (1 HSPs)
scaffold0103 (159-252)||(44616-44710)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 28860016 - 28860115
Alignment:
Q  18 ttttgtacttgtgcctttgcaaagtgaattaatgtgcgttagttcattcataagaatatcatagttctttattgttttgaaagaagaatatcatagttct 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28860016 ttttgtacttgtgtctttgcaaagtgaattaatgtgcgttagttcattcataagaatatcatagttctttattgttttgaaagaagaatatcatagttct 28860115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 43041129 - 43041036
Alignment:
Q  159 atatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43041129 atatactccctccattccttttcttttgatgttttaaaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctc 43041036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 15233757 - 15233845
Alignment:
Q  164 ctccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  15233757 ctccctctattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctc 15233845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 31296081 - 31296173
Alignment:
Q  160 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  31296081 tatactccttccattctttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctc 31296173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 35793184 - 35793096
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgtttt 249  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  35793184 atactccctccattctttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagagaatttattattgtttt 35793096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 41252414 - 41252505
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  41252414 atactccctccattccttttctttttatgttttagaacttcaaatatattccaaaacttttgatgttttagtgaatttattattgtgttctc 41252505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 44104833 - 44104743
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  44104833 tactccctccgttccttttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctc 44104743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 41642891 - 41642984
Alignment:
Q  162 tactccctccattccttttcttttgatgtttt-agaacttcaactata--ttccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  41642891 tactccctccatttcttttcttttgatgtttttagaatttcaactatatattccaaaacttttgatgttttagtgaatttattattgttttctc 41642984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 10118729 - 10118660
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttag 231  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||| ||||||||||| |||||||||||||    
T  10118729 tactccctccattccttttcttttgatattttagagcttaaactttattccaaaacttttgatgttttag 10118660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 28860139 - 28860188
Alignment:
Q  101 aagaatatcatagttctgatttcaagtaaatgaataattagatacacata 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28860139 aagaatatcatagttctgatttcaagtaaatgaataattagatacacata 28860188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 31903641 - 31903569
Alignment:
Q  177 ttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgtttt 249  Q
    |||| |||||||||||||||||||||| |||||||||||   |||||||||||||| ||||||||||||||||    
T  31903641 tttttttttgatgttttagaacttcaaatatattccaaattttttgatgttttagtaaatttattattgtttt 31903569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 21727684 - 21727736
Alignment:
Q  177 ttttcttttgatgttttagaacttcaactatattccaaaacatttgatgtttt 229  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  21727684 ttttcttttgatgttttagaacttcaactatatttcaaaatatttgatgtttt 21727736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 36963130 - 36963200
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttag 231  Q
    |||||| ||| |||||||||||||| ||||||||||| || |||| |||| ||||| ||||||||||||||    
T  36963130 atactcgctctattccttttcttttaatgttttagaatttaaactttatttcaaaaaatttgatgttttag 36963200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 10112336 - 10112372
Alignment:
Q  159 atatactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||||||||||||||||||||||||||    
T  10112336 atatactccctccattccttttcttttgatgttttag 10112372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 15234032 - 15233999
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||    
T  15234032 tactccctccattccttttcttttgatgttttag 15233999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 43040849 - 43040882
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||    
T  43040849 tactccctccattccttttcttttgatgttttag 43040882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 44104546 - 44104578
Alignment:
Q  162 tactccctccattccttttcttttgatgtttta 194  Q
    |||||||||||||||||||||||||||||||||    
T  44104546 tactccctccattccttttcttttgatgtttta 44104578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 27312394 - 27312303
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27312394 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 27312303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 32274433 - 32274524
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  32274433 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctc 32274524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 12174698 - 12174790
Alignment:
Q  160 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12174698 tatactccctccattccttttcttttaatgttttagaactttaaatatattccaaaacttttgatgttttagtgaatttattattgttttctc 12174790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 8504977 - 8504889
Alignment:
Q  164 ctccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  8504977 ctccctccattcattttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctc 8504889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 169 - 252
Target Start/End: Original strand, 5003889 - 5003972
Alignment:
Q  169 tccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||| |||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  5003889 tccattcatttttttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctc 5003972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 7156503 - 7156413
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttct 251  Q
    |||||||||||||| |||||||||||||||||||||   |||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  7156503 atactccctccatttcttttcttttgatgttttagacaatcaactatattccaaaactttagatgttttagtgaatttattattgttttct 7156413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 31171267 - 31171177
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||| |||||||||||||| ||||||| ||||| | |||||||||||||| |||||| ||||||||||||||||||||||||    
T  31171267 tactccctccatttcttttcttttgatgatttagaaattcaaatgtattccaaaacattagatgttgtagtgaatttattattgttttctc 31171177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 18741947 - 18742037
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||  ||||| |||||| |||||    
T  18741947 tactccctccatttcttttcttttgatgttttaggacttcaactttatttcaaaacatttgatgttttagtatatttaatattgtattctc 18742037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 29452821 - 29452729
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttatta-ttgttttctc 252  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||| |||    ||||||||||||||||||||||| ||||||||||    
T  29452821 atactccctccatttcttttcttctgatgttttagaacttcaactatattctaaatttcttgatgttttagtgaatttattacttgttttctc 29452729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 29302548 - 29302500
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatatt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29302548 tactccctccattccttttcttttgatgttttagaacttcaactatatt 29302500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 27312113 - 27312147
Alignment:
Q  161 atactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||||||||||||||||||||||||    
T  27312113 atactccctccattccttttcttttgatgttttag 27312147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 8504733 - 8504766
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||    
T  8504733 tactccctccattccttttcttttgatgttttag 8504766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 2543359 - 2543325
Alignment:
Q  161 atactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||| |||||||||||||||||||    
T  2543359 atactccctccattcgttttcttttgatgttttag 2543325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 252
Target Start/End: Original strand, 2543142 - 2543171
Alignment:
Q  223 atgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||||||||||||||||||||    
T  2543142 atgttttagtgaatttattattgttttctc 2543171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 32274711 - 32274678
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||| |||||||||||||||||||    
T  32274711 tactccctccattcattttcttttgatgttttag 32274678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 18742223 - 18742191
Alignment:
Q  162 tactccctccattccttttcttttgatgtttta 194  Q
    ||||||||||||| |||||||||||||||||||    
T  18742223 tactccctccatttcttttcttttgatgtttta 18742191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 29371817 - 29371725
Alignment:
Q  160 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29371817 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctc 29371725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 18996967 - 18997057
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18996967 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctc 18997057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 18999506 - 18999596
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18999506 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctc 18999596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 1352274 - 1352183
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  1352274 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctc 1352183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 28228436 - 28228526
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28228436 tactctctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctc 28228526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 32677754 - 32677664
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  32677754 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttctc 32677664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 39528749 - 39528839
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  39528749 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctc 39528839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 41349648 - 41349558
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||    
T  41349648 tactccctccattccttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttgttattgttttctc 41349558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 21974152 - 21974239
Alignment:
Q  165 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21974152 tccctccatttcttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctc 21974239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 21996583 - 21996670
Alignment:
Q  165 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21996583 tccctccatttcttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctc 21996670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 39807256 - 39807166
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||    
T  39807256 tacttcctccattccttttcttttgatgttttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgttttctc 39807166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 38855323 - 38855407
Alignment:
Q  168 ctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38855323 ctccattccttttcttttgatgttttaaaacatcaactatattccaaaacttttgatgttttagtgaatttattattgttttctc 38855407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 55365906 - 55365998
Alignment:
Q  160 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||    
T  55365906 tatactcccttcattccttttcttttgatgttttagaacttcaactatatttcaaattttttgatgttttagtgaatttattattgttttctc 55365998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 22157261 - 22157348
Alignment:
Q  165 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||    
T  22157261 tccctccatttcttttcttttgatgttttagaacttcaactatattctaaaacttttgatattttagtgaatttattattgttttctc 22157348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 169 - 252
Target Start/End: Complemental strand, 29014960 - 29014877
Alignment:
Q  169 tccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||| |||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29014960 tccattctttttttttttatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctc 29014877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 36738112 - 36738021
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||| | |||||||||||||||||||||||||||||| |||||||||  ||||| ||||||||||||||||||||||||||||||||||    
T  36738112 atactccattcattccttttcttttgatgttttagaactttaactatattttaaaacttttgatgttttagtgaatttattattgttttctc 36738021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 39518422 - 39518497
Alignment:
Q  177 ttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||| ||||||||||||| ||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||    
T  39518422 tttttttttgatgttttaaaacttcaactatatttcaaaacttttgatattttagtgaatttattattgttttctc 39518497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 49041107 - 49041052
Alignment:
Q  177 ttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagt 232  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  49041107 ttttcttttgatgttttagaacttcaactatgttccaaaatatttgatgttttagt 49041052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 32839949 - 32840037
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttct 251  Q
    |||||||||||||| ||||||||| || |||||||||||||||||||||  |||   ||||||||||||||||| |||||||| ||||||    
T  32839949 tactccctccattcattttctttttatattttagaacttcaactatattttaaattttttgatgttttagtgaa-ttattattattttct 32840037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 49319347 - 49319416
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttag 231  Q
    |||| |||||||||||||||||||||||||||||||||| ||||  |||| ||||  |||||||||||||    
T  49319347 tacttcctccattccttttcttttgatgttttagaacttaaacttcattctaaaaattttgatgttttag 49319416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 41349368 - 41349404
Alignment:
Q  159 atatactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||||||||||||||||||||||||||    
T  41349368 atatactccctccattccttttcttttgatgttttag 41349404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 39518686 - 39518651
Alignment:
Q  160 tatactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||||    
T  39518686 tatactccctccattccttttcttttgatgttttag 39518651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 29014689 - 29014723
Alignment:
Q  161 atactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||||||||||||||||||||||||    
T  29014689 atactccctccattccttttcttttgatgttttag 29014723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 36737833 - 36737867
Alignment:
Q  161 atactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||||||||||||||||||||||||    
T  36737833 atactccctccattccttttcttttgatgttttag 36737867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 38855595 - 38855561
Alignment:
Q  161 atactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||||||||||||||||||||||||    
T  38855595 atactccctccattccttttcttttgatgttttag 38855561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 1351996 - 1352029
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||    
T  1351996 tactccctccattccttttcttttgatgttttag 1352029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 18997244 - 18997211
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||    
T  18997244 tactccctccattccttttcttttgatgttttag 18997211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 18999783 - 18999750
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||    
T  18999783 tactccctccattccttttcttttgatgttttag 18999750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 39529026 - 39528993
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||    
T  39529026 tactccctccattccttttcttttgatgttttag 39528993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 46879012 - 46878980
Alignment:
Q  162 tactccctccattccttttcttttgatgtttta 194  Q
    |||||||||||||||||||||||||||||||||    
T  46879012 tactccctccattccttttcttttgatgtttta 46878980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 34667762 - 34667699
Alignment:
Q  168 ctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttag 231  Q
    ||||||| | |||||||||||||||||| ||||||||| || | ||||| ||||||| ||||||    
T  34667762 ctccatttcgtttcttttgatgttttaggacttcaactttaattcaaaatatttgatcttttag 34667699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 29371538 - 29371571
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||| |||||||||||||||||||    
T  29371538 tactccctccattcattttcttttgatgttttag 29371571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 32677477 - 32677510
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||| |||||||||||||||||||    
T  32677477 tactccctccattcattttcttttgatgttttag 32677510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 39806979 - 39807012
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    |||||||| |||||||||||||||||||||||||    
T  39806979 tactcccttcattccttttcttttgatgttttag 39807012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 29427442 - 29427351
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29427442 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctc 29427351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 17904163 - 17904253
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17904163 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctc 17904253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 46467612 - 46467522
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46467612 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctc 46467522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 37179608 - 37179519
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttct 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37179608 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttct 37179519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 26770179 - 26770269
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  26770179 tactccctccattccttttcttttgatgttttagaacttcaactaaattccaaaacttttgatgttttagtgaatttattattgttttctc 26770269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 4405107 - 4405199
Alignment:
Q  160 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4405107 tatactccctccatttcttttcttttgatgttttaaaacttcaactatattctaaaacatttgatgttttagtgaatttattattgttttctc 4405199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 6389732 - 6389822
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6389732 tactccctccattcattttgttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctc 6389822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 166 - 251
Target Start/End: Complemental strand, 31503210 - 31503125
Alignment:
Q  166 ccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttct 251  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31503210 ccctccgttccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttct 31503125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 6387969 - 6387882
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgtttt 249  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  6387969 tactccctccattccttttcttttgatgttttagaactgcaactatattccaaaacttttgatgttttagtgaatttgttattgtttt 6387882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 9876271 - 9876353
Alignment:
Q  170 ccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9876271 ccattccttttcttttgatgttttaaaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctc 9876353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 29891103 - 29891013
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||| |||||||||||    
T  29891103 tactccctccattccttttcttttgatgttttaaaacttcaactatattccaaaatttttgatgttttagtgaatttatgattgttttctc 29891013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 41922133 - 41922044
Alignment:
Q  160 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgtttt 249  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  41922133 tatactccctctatttcttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttaatattgtttt 41922044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 9332364 - 9332451
Alignment:
Q  165 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  9332364 tccctccattttttttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctc 9332451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 19523975 - 19523885
Alignment:
Q  161 atactccctccattccttttcttt--tgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgtttt 249  Q
    |||||||||| ||||||||| |||  ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  19523975 atactccctctattccttttttttgttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttattattgtttt 19523885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 43701550 - 43701620
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttag 231  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  ||||||||| ||||||||||||||    
T  43701550 atactccctccattccttttcttttgatgttttagaacttaaacttcattccaaaaaatttgatgttttag 43701620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 12252069 - 12252134
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgtt 227  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12252069 tactccctccattttttttcttttgatgttttagaacttcaactatattccaaaatatttgatgtt 12252134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 33379244 - 33379175
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttag 231  Q
    ||||||||||||| ||||||||||||||||||||||||||||||  ||| ||||| ||||||||||||||    
T  33379244 tactccctccatttcttttcttttgatgttttagaacttcaacttgatttcaaaatatttgatgttttag 33379175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 29722955 - 29723023
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgtttta 230  Q
    ||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||    
T  29722955 tactctctccattccttttcttttgatattttagaacttaaactttattccaaaacttttgatgtttta 29723023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 31858373 - 31858301
Alignment:
Q  160 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagt 232  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||  |||| |||||||||||||||    
T  31858373 tatactccctccattttttttcttttgatgttttacaacttcaactatattttaaaatatttgatgttttagt 31858301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 46689878 - 46689933
Alignment:
Q  177 ttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagt 232  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  46689878 ttttcttttgatgttttagaacttcaactatattccaaaatacttgatgttttagt 46689933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 49011120 - 49011065
Alignment:
Q  177 ttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagt 232  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  49011120 ttttcttttgatgttttaggacttcaactatatttcaaaacatttgatgttttagt 49011065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 33974506 - 33974579
Alignment:
Q  177 ttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttc 250  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||  ||||| |||| |||||    
T  33974506 ttttcttttgatgttttcgaacttcaactatattccaaaatattttatgttttagtatatttaatatttttttc 33974579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 9215722 - 9215672
Alignment:
Q  182 ttttgatgttttagaacttcaactatattccaaaacatttgatgttttagt 232  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  9215722 ttttgatgttttagaacttcaactatattccaaaatatttaatgttttagt 9215672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 33915716 - 33915786
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagt 232  Q
    ||||||||||||||  |||||||||| |||||| ||| || ||||||||| ||||| |||||||||||||||    
T  33915716 atactccctccattt-ttttcttttgttgtttttgaattttaactatatttcaaaatatttgatgttttagt 33915786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 4405387 - 4405353
Alignment:
Q  161 atactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||||||||||||||||||||||||    
T  4405387 atactccctccattccttttcttttgatgttttag 4405353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 29890825 - 29890859
Alignment:
Q  161 atactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||||||||||||||||||||||||    
T  29890825 atactccctccattccttttcttttgatgttttag 29890859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 46467333 - 46467367
Alignment:
Q  160 tatactccctccattccttttcttttgatgtttta 194  Q
    |||||||||||||||||||||||||||||||||||    
T  46467333 tatactccctccattccttttcttttgatgtttta 46467367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 17904440 - 17904407
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||    
T  17904440 tactccctccattccttttcttttgatgttttag 17904407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 29723414 - 29723381
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||    
T  29723414 tactccctccattccttttcttttgatgttttag 29723381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 37179331 - 37179364
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||    
T  37179331 tactccctccattccttttcttttgatgttttag 37179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 26770458 - 26770424
Alignment:
Q  160 tatactccctccattccttttcttttgatgtttta 194  Q
    |||||||||||||||| ||||||||||||||||||    
T  26770458 tatactccctccattcattttcttttgatgtttta 26770424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 6387692 - 6387725
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    |||| |||||||||||||||||||||||||||||    
T  6387692 tacttcctccattccttttcttttgatgttttag 6387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 29874954 - 29875044
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29874954 tactccctccattctttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 29875044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 12399223 - 12399133
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  12399223 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctc 12399133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 34208538 - 34208628
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  34208538 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctc 34208628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 23090298 - 23090388
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||||||    
T  23090298 tactccctccattccttttcttttgatgttttagaacttcaactgtattccaaaatttttgatgttttagtgaatttgttattgttttctc 23090388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 4145694 - 4145783
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttct 251  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  4145694 tactcgctccattccttttcttttgatgttttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgttttct 4145783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 4695439 - 4695349
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||    
T  4695439 tactcccttcattccttttcttttgattttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttgttattgttttctc 4695349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 3077596 - 3077687
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||  ||||| |||||||||||||||||||| |||||||||||||    
T  3077596 atactccctccattcattttcttttgatgttttagaatttcaactatattttaaaacttttgatgttttagtgaatttgttattgttttctc 3077687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 42758072 - 42757997
Alignment:
Q  177 ttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||| |||| ||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||    
T  42758072 ttttttttttatgttttagaacttcaactatttttcaaaacttttgatgttttagtgaatttattattgttttctc 42757997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 12096466 - 12096413
Alignment:
Q  177 ttttcttttgatgttttagaacttcaactatattccaaaacatttgatgtttta 230  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12096466 ttttcttttgatgttttaggacttcaactatattccaaaacatttgatgtttta 12096413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 41610694 - 41610625
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttag 231  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||    
T  41610694 tactctctccatttcttttcttttgatgttttagaacttaaactttattccaaaacttttgatgttttag 41610625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 42793040 - 42793109
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttag 231  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||    
T  42793040 tactcactccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 42793109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 4434783 - 4434847
Alignment:
Q  165 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgtttt 229  Q
    |||||||||| |||||||||||||||||||| ||||||||| |||| ||| | ||||||||||||    
T  4434783 tccctccatttcttttcttttgatgttttaggacttcaactttatttcaagatatttgatgtttt 4434847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 29875235 - 29875198
Alignment:
Q  158 aatatactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29875235 aatatactccctccattccttttcttttgatgttttag 29875198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 42793598 - 42793562
Alignment:
Q  159 atatactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||||||||||||||||||||||||||    
T  42793598 atatactccctccattccttttcttttgatgttttag 42793562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 8718023 - 8718094
Alignment:
Q  160 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttag 231  Q
    |||| |||||||||| ||||||||||||| |||||  | ||||||| |||| ||||| ||||||||||||||    
T  8718023 tataatccctccatttcttttcttttgatattttaagatttcaactttatttcaaaatatttgatgttttag 8718094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 23090577 - 23090543
Alignment:
Q  160 tatactccctccattccttttcttttgatgtttta 194  Q
    |||||||||||||||||||||||||||||||||||    
T  23090577 tatactccctccattccttttcttttgatgtttta 23090543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 12398946 - 12398979
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||    
T  12398946 tactccctccattccttttcttttgatgttttag 12398979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 41610372 - 41610405
Alignment:
Q  161 atactccctccattccttttcttttgatgtttta 194  Q
    ||||||||||||||||||||||||||||||||||    
T  41610372 atactccctccattccttttcttttgatgtttta 41610405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 42757805 - 42757838
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||    
T  42757805 tactccctccattccttttcttttgatgttttag 42757838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 34208817 - 34208782
Alignment:
Q  160 tatactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||| ||||||||||||||    
T  34208817 tatactccctccattcctttttttttgatgttttag 34208782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 594362 - 594328
Alignment:
Q  177 ttttcttttgatgttttagaacttcaactatattc 211  Q
    |||||||||||||||||| ||||||||||||||||    
T  594362 ttttcttttgatgttttaaaacttcaactatattc 594328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 19574685 - 19574753
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgtttta 230  Q
    ||||||||||||||  || |||||||||||||||| ||||||| || ||| ||||| |||| ||||||||    
T  19574685 atactccctccattt-ttgtcttttgatgttttaggacttcaattaaatttcaaaatatttaatgtttta 19574753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 22528023 - 22528072
Alignment:
Q  183 tttgatgttttagaacttcaactatattccaaaacatttgatgttttagt 232  Q
    |||||| |||||| ||||||| |||| ||||||| |||||||||||||||    
T  22528023 tttgatattttaggacttcaattatactccaaaatatttgatgttttagt 22528072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 4817267 - 4817359
Alignment:
Q  160 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  4817267 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttatcattgttttctc 4817359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 4055483 - 4055574
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  4055483 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaattaattattgttttctc 4055574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 18126851 - 18126941
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  18126851 tactccctccattccttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctc 18126941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 47669118 - 47669209
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  47669118 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttgttattgttttctc 47669209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 46220259 - 46220349
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  46220259 tactccctctattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctc 46220349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 1236307 - 1236217
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  1236307 tactccctccattcattttcttttgatgttttagaactttaactatattccaaaacttttgatggtttagtgaatttattattgttttctc 1236217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 9831503 - 9831593
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| |||||||    
T  9831503 tactccctccattccttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttgttattattttctc 9831593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 10737978 - 10737888
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  10737978 tactcccttcattccttttcttttaatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctc 10737888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 48564817 - 48564907
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  48564817 atactccctccattacttttcttt-gatgttttaaaacttcaactatattccaaaaattttgatgttttagtgaatttattattgttttctc 48564907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 8889457 - 8889532
Alignment:
Q  177 ttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8889457 ttttttttttatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctc 8889532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 7414208 - 7414297
Alignment:
Q  163 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||  |||   ||||||||||||||||||||||||||||||||||    
T  7414208 actccctccattcatttttttttgatgttttagaacttcaactatattttaaattttttgatgttttagtgaatttattattgttttctc 7414297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 3384870 - 3384782
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||| |  |||||| ||||||||||||||||||||||||||||||||||    
T  3384870 tactcccttcattctttttcttttgatgttttagaacctcaactattt--caaaacttttgatgttttagtgaatttattattgttttctc 3384782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 1749601 - 1749521
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttatt 241  Q
    ||||| |||| ||||||||||||||||||||||||||||| || ||||| ||||||| |||||||||||||||||||||||    
T  1749601 atacttcctctattccttttcttttgatgttttagaactttaattatataccaaaacttttgatgttttagtgaatttatt 1749521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 33020206 - 33020275
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttag 231  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| | ||||||||| |||||||||||||    
T  33020206 tactccctccattccttttcttttgatgttttagagcttaaacttttttccaaaacttttgatgttttag 33020275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 26842462 - 26842527
Alignment:
Q  185 tgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttc 250  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||  ||||| |||| |||||    
T  26842462 tgatgttttagaacttcaactatatttcaaaatatttgatgttttagtatatttaatatttttttc 26842527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 39241172 - 39241236
Alignment:
Q  182 ttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgtt 247  Q
    |||| ||||||||||| |||||||||||| |||||| |||| ||||| ||||||||||||||||||    
T  39241172 ttttaatgttttagaa-ttcaactatatttcaaaacttttgttgtttcagtgaatttattattgtt 39241236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 10737700 - 10737734
Alignment:
Q  161 atactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||||||||||||||||||||||||    
T  10737700 atactccctccattccttttcttttgatgttttag 10737734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 46220537 - 46220503
Alignment:
Q  161 atactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||||||||||||||||||||||||    
T  46220537 atactccctccattccttttcttttgatgttttag 46220503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 47669396 - 47669363
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||    
T  47669396 tactccctccattccttttcttttgatgttttag 47669363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 1236071 - 1236103
Alignment:
Q  163 actccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||||||||||||||||||||||    
T  1236071 actccctccattccttttcttttgatgttttag 1236103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 48565095 - 48565063
Alignment:
Q  161 atactccctccattccttttcttttgatgtttt 193  Q
    |||||||||||||||||||||||||||||||||    
T  48565095 atactccctccattccttttcttttgatgtttt 48565063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 33023463 - 33023428
Alignment:
Q  160 tatactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||||||||||||||||| |||||||    
T  33023463 tatactccctccattccttttcttttgacgttttag 33023428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 195
Target Start/End: Complemental strand, 9831777 - 9831747
Alignment:
Q  165 tccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||||||||||||||||||||    
T  9831777 tccctccattccttttcttttgatgttttag 9831747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 37875726 - 37875760
Alignment:
Q  161 atactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||| ||||||||||||||||||||    
T  37875726 atactccctccatttcttttcttttgatgttttag 37875760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 8889720 - 8889687
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||| ||||||||||||||    
T  8889720 tactccctccattccttttattttgatgttttag 8889687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 33838007 - 33837916
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  33838007 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctc 33837916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 2509073 - 2508983
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  2509073 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctc 2508983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 28378947 - 28379037
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28378947 tactccctccattatttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctc 28379037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 45334553 - 45334466
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgtttt 249  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||    
T  45334553 tactccctccattccttttcttttgatgttttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgtttt 45334466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 25106209 - 25106298
Alignment:
Q  160 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgtttt 249  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  25106209 tatactctctccattccttttcttttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttatgattgtttt 25106298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 27793469 - 27793378
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  27793469 atactccttccattcattttcttttgatgttttagatcttcaactatattccaaaacttttaatgttttagtgaatttattattgttttctc 27793378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 13469777 - 13469692
Alignment:
Q  167 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| |||||||||||    
T  13469777 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatattttagtaaatttataattgttttctc 13469692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 9739984 - 9740075
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||| |||||| |||||||||||| |||||||||||||| ||||||    
T  9739984 atactccctccattccttttcttttgatgttttagaacttcatgtatatttcaaaacttttgatgttttactgaatttattattgctttctc 9740075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 38495749 - 38495659
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||||||| ||||  ||||||||||| ||||||||||||||||||||||    
T  38495749 tacttcctccattctttttcttgtgatgttttagaacttcaactatattctaaaatttttgatgttttggtgaatttattattgttttctc 38495659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 32183762 - 32183671
Alignment:
Q  159 atatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttc 250  Q
    ||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||| |||| |||||    
T  32183762 atatactcccttcattttttttcttttgatgttttagaacttcaactatattccaaaatatttgatgttttagtatatttaatatttttttc 32183671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 27024432 - 27024502
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttag 231  Q
    |||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||    
T  27024432 atactccctccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 27024502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 25979037 - 25978969
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgtttt 229  Q
    |||||||||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  25979037 atactccctccatttcttttcttttgatgttttaggacttcaactttatttcaaaacatttgatgtttt 25978969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 8235161 - 8235230
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgtttta 230  Q
    ||||||||||||||  ||||||||||||||||||| ||||||| | |||| |||||||||||||||||||    
T  8235161 atactccctccatttattttcttttgatgttttaggacttcaattttatttcaaaacatttgatgtttta 8235230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 27027692 - 27027655
Alignment:
Q  158 aatatactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27027692 aatatactccctccattccttttcttttgatgttttag 27027655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 2626472 - 2626425
Alignment:
Q  206 atattccaaaacatttgatgttttagtgaatttatta-ttgttttctc 252  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||    
T  2626472 atattccaaaacttttgatgttttagtgaatttattatttgttttctc 2626425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 25106488 - 25106455
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||    
T  25106488 tactccctccattccttttcttttgatgttttag 25106455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 28379224 - 28379191
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||    
T  28379224 tactccctccattccttttcttttgatgttttag 28379191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 33837729 - 33837762
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||    
T  33837729 tactccctccattccttttcttttgatgttttag 33837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 45334276 - 45334309
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||||||||||||||||||    
T  45334276 tactccctccattccttttcttttgatgttttag 45334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 9740263 - 9740231
Alignment:
Q  162 tactccctccattccttttcttttgatgtttta 194  Q
    |||||||||||||||||||||||||||||||||    
T  9740263 tactccctccattccttttcttttgatgtttta 9740231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 2626714 - 2626667
Alignment:
Q  177 ttttcttttgatgttttagaacttcaactatattccaaaacatttgat 224  Q
    |||| |||| || |||||||||||||||||||||||||||| ||||||    
T  2626714 ttttttttttatattttagaacttcaactatattccaaaacttttgat 2626667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 13469507 - 13469540
Alignment:
Q  161 atactccctccattccttttcttttgatgtttta 194  Q
    ||||||| ||||||||||||||||||||||||||    
T  13469507 atactccttccattccttttcttttgatgtttta 13469540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 38495472 - 38495505
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||| |||||||||||||||||||    
T  38495472 tactccctccattcattttcttttgatgttttag 38495505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 30469446 - 30469355
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30469446 atactcccttcattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctc 30469355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 33288683 - 33288592
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33288683 atactccctccatttcttttcttttgatattttagaacttcaattatattccaaaacttttgatgttttagtgaatttattattgttttctc 33288592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 8956056 - 8955966
Alignment:
Q  159 atatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgtttt 249  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||    
T  8956056 atatactccctccattcctttttttttgatgttttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgtttt 8955966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 45590739 - 45590829
Alignment:
Q  159 atatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgtttt 249  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  45590739 atatactccctccattcattttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaattcattattgtttt 45590829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 39481906 - 39481993
Alignment:
Q  165 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||    
T  39481906 tccctccatttcttttcttttgatgttttagaacttcaactattttccaaaacttttgatgttttagtaaatttattattgttttctc 39481993  T

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Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 34334342 - 34334422
Alignment:
Q  172 attccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||    
T  34334342 attccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgctttagtgaatttattattgtcttctc 34334422  T

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Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 49162108 - 49162192
Alignment:
Q  168 ctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  49162108 ctccattcattttcttttgatgtttcagaacttcaactatattccaaaatttttgatgttttagtgaatttattattgttttctc 49162192  T

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Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 18835705 - 18835797
Alignment:
Q  162 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtga--atttattattgttttctc 252  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||  || |||||||||||||||    
T  18835705 tactcccttcatttattttcttttgatgttttagaacttcaactatattccaaaactttcgatgttttagtgaatatatattattgttttctc 18835797  T

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Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 19256185 - 19256255
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttag 231  Q
    |||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||    
T  19256185 atactccctccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 19256255  T

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Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 36016278 - 36016329
Alignment:
Q  161 atactccctccattccttttcttttgatgttttagaacttcaactatattcc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36016278 atactccctccattccttttcttttgatgttttagaacttcaactatattcc 36016329  T

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Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 36968353 - 36968407
Alignment:
Q  177 ttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttag 231  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36968353 tttttttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 36968407  T

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Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 26025803 - 26025729
Alignment:
Q  159 atatactccctccattcctttt-cttttgatgttttagaacttcaactatattccaaaacatttgatgttttagt 232  Q
    ||||||||||||||||  |||| ||||||||||||||| |||||||||||||||||||| ||||||  |||||||    
T  26025803 atatactccctccatttttttttcttttgatgttttaggacttcaactatattccaaaatatttgacattttagt 26025729  T

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Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 50774325 - 50774245
Alignment:
Q  177 ttttcttttgatgttttagaacttcaactatattccaaaacatttga-----tgttttagtgaatttattattgttttctc 252  Q
    |||| ||||||||||||||||||| ||||||||| |||||| |||||     | |||||||||||||||||||||||||||    
T  50774325 tttttttttgatgttttagaactttaactatatttcaaaacttttgatacagtattttagtgaatttattattgttttctc 50774245  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 19257137 - 19257103
Alignment:
Q  162 tactccctccattccttttcttttgatgttttaga 196  Q
    |||||||||||||||||||||||||||||||||||    
T  19257137 tactccctccattccttttcttttgatgttttaga 19257103  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 33109163 - 33109089
Alignment:
Q  177 ttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttct 251  Q
    ||||||||| ||||||||| ||||||||||||||  |||| | |||||||||||||  ||||| |||| ||||||    
T  33109163 ttttcttttaatgttttaggacttcaactatattttaaaataattgatgttttagtatatttaatatttttttct 33109089  T

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Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 49162369 - 49162332
Alignment:
Q  158 aatatactccctccattccttttcttttgatgttttag 195  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  49162369 aatatactccctccattccctttcttttgatgttttag 49162332  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 8955770 - 8955809
Alignment:
Q  156 ataatatactccctccattccttttcttttgatgttttag 195  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  8955770 ataagatattccctccattccttttcttttgatgttttag 8955809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 45591019 - 45590986
Alignment:
Q  162 tactccctccattccttttcttttgatgttttag 195  Q
    |||||||||||||| |||||||||||||||||||    
T  45591019 tactccctccattcattttcttttgatgttttag 45590986  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 39482138 - 39482106
Alignment:
Q  163 actccctccattccttttcttttgatgttttag 195  Q
    |||||||||||| ||||||||||||||||||||    
T  39482138 actccctccatttcttttcttttgatgttttag 39482106  T

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Target: scaffold0103 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 159 - 252
Target Start/End: Original strand, 44616 - 44710
Alignment:
Q  159 atatactccctccattccttttcttt-tgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctc 252  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  44616 atatactcccttcattccttttctttctgatgtttgagaacttcaactatattccaaaacttttgaggttttagtgaatttattattgttttctc 44710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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