View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10162_low_24 (Length: 251)

Name: NF10162_low_24
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10162_low_24
NF10162_low_24
[»] chr5 (4 HSPs)
chr5 (1-156)||(4300994-4301153)
chr5 (1-128)||(4294466-4294592)
chr5 (157-187)||(26317829-26317859)
chr5 (156-214)||(22616493-22616551)
[»] chr2 (4 HSPs)
chr2 (156-246)||(34441880-34441970)
chr2 (157-246)||(41713164-41713253)
chr2 (151-187)||(4763622-4763658)
chr2 (158-246)||(42005390-42005478)
[»] chr6 (4 HSPs)
chr6 (156-246)||(11084111-11084201)
chr6 (156-246)||(26301882-26301972)
chr6 (156-246)||(19631748-19631838)
chr6 (151-187)||(1623279-1623315)
[»] chr4 (3 HSPs)
chr4 (151-240)||(2704506-2704595)
chr4 (159-237)||(9743590-9743668)
chr4 (155-187)||(35025769-35025801)
[»] chr3 (2 HSPs)
chr3 (157-237)||(47930634-47930714)
chr3 (158-240)||(19606879-19606961)
[»] chr8 (5 HSPs)
chr8 (156-238)||(4108879-4108961)
chr8 (157-226)||(28220934-28221003)
chr8 (163-246)||(23176722-23176805)
chr8 (164-246)||(8151371-8151453)
chr8 (154-187)||(16447036-16447069)
[»] chr1 (2 HSPs)
chr1 (155-237)||(13876887-13876969)
chr1 (155-187)||(2959742-2959774)
[»] scaffold0008 (1 HSPs)
scaffold0008 (153-185)||(267278-267310)
[»] chr7 (1 HSPs)
chr7 (155-187)||(241039-241071)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 4300994 - 4301153
Alignment:
Q  1 ctatgctttcagatttgctcagagccacccatcatttcttgctggaaattctgccaacaattctgttcaagtaccgtcctcacttgttatttatggtaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4300994 ctatgctttcagatttgctcagagccacccatcatttcttgctagaaattctgccaacaattctgttcaagtaccgtcctcacctgttatttatggtaaa 4301093  T
Q  101 aacaataattggataactatt----tgagtggtgtgcttttgatttgtgtaatcatttta 156  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||||| ||||||    
T  4301094 aacaataattggataactatttgaatgagtggtgtgcttttgatttgtgtaatgatttta 4301153  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 4294466 - 4294592
Alignment:
Q  1 ctatgctttcagatttgctcagagccacccatcatttcttgctggaaattctgccaacaattctgttcaagtaccgtcctcacttgttatttatggtaaa 100  Q
    ||||||||||||||||||||||||  |||||||||||||||||  |||||| |||||||||||| ||||| | || ||| ||| ||||||||||||||||    
T  4294466 ctatgctttcagatttgctcagagtaacccatcatttcttgctataaattcagccaacaattctcttcaaatgccatccacacctgttatttatggtaaa 4294565  T
Q  101 aacaataattggataactatttgagtgg 128  Q
    || |||| ||||||| ||||||||||||    
T  4294566 aa-aatagttggatatctatttgagtgg 4294592  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 187
Target Start/End: Complemental strand, 26317859 - 26317829
Alignment:
Q  157 ggaaaattctatgatgaagtcatgaaaatga 187  Q
    |||||||||||||||||||||||||||||||    
T  26317859 ggaaaattctatgatgaagtcatgaaaatga 26317829  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 22616493 - 22616551
Alignment:
Q  156 aggaaaattctatgatgaagtcatgaaaatgannnnnnnggtgaagttaaatgaccaat 214  Q
    |||||||||||||| |||||||||||||||||       |||||||||||||| |||||    
T  22616493 aggaaaattctatggtgaagtcatgaaaatgacttttctggtgaagttaaatggccaat 22616551  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 34441970 - 34441880
Alignment:
Q  156 aggaaaattctatgatgaagtcatgaaaatgannnnnnnggtgaagttaaatgaccaattattaaatatttatgtatttaattcatctcac 246  Q
    |||||||||||||| |||||||||||||||||       ||| |||||||||||||||||||| ||||||| |||||||||||||| ||||    
T  34441970 aggaaaattctatggtgaagtcatgaaaatgacttttttggtaaagttaaatgaccaattattgaatatttgtgtatttaattcatgtcac 34441880  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 41713164 - 41713253
Alignment:
Q  157 ggaaaattctatgatgaagtcatgaaaatgannnnnnnggtgaagttaaatgaccaattattaaatatttatgtatttaattcatctcac 246  Q
    ||||||||||||  |||| ||||||||||||       |||||| ||||||||||||| ||| |||||||||||||||||||||| ||||    
T  41713164 ggaaaattctatagtgaaatcatgaaaatgatttttctggtgaaattaaatgaccaatcattgaatatttatgtatttaattcatgtcac 41713253  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 4763622 - 4763658
Alignment:
Q  151 attttaggaaaattctatgatgaagtcatgaaaatga 187  Q
    ||||| |||||||||||||||||||||||||||||||    
T  4763622 atttttggaaaattctatgatgaagtcatgaaaatga 4763658  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 42005390 - 42005478
Alignment:
Q  158 gaaaattctatgatgaagtcatgaaaatgannnnnnnggtgaagttaaatgaccaattattaaatatttatgtatttaattcatctcac 246  Q
    |||||||||||| |||||||||||||||||       ||||||||||||||| |||  ||| ||||||| | |||||||| ||| ||||    
T  42005390 gaaaattctatggtgaagtcatgaaaatgatttttttggtgaagttaaatgatcaaccattgaatatttgtttatttaatccatgtcac 42005478  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 11084201 - 11084111
Alignment:
Q  156 aggaaaattctatgatgaagtcatgaaaatgannnnnnnggtgaagttaaatgaccaattattaaatatttatgtatttaattcatctcac 246  Q
    |||||||||||||| ||||||||||||||| |       ||| |||||||||||||||| ||| |||||||||||||||||| ||| ||||    
T  11084201 aggaaaattctatggtgaagtcatgaaaataacttttctggtaaagttaaatgaccaatcattgaatatttatgtatttaatccatgtcac 11084111  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 26301972 - 26301882
Alignment:
Q  156 aggaaaattctatgatgaagtcatgaaaatgannnnnnnggtgaagttaaatgaccaattattaaatatttatgtatttaattcatctcac 246  Q
    ||||||||| |||| ||||||||| |||||||        ||||||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  26301972 aggaaaattatatggtgaagtcataaaaatgatttttttcgtgaagttaaatgaccaatcattgaatatttatgtatttaattcatgtcac 26301882  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 19631748 - 19631838
Alignment:
Q  156 aggaaaattctatgatgaagtcatgaaaatgannnnnnnggtgaagttaaatgaccaattattaaatatttatgtatttaattcatctcac 246  Q
    |||||||||||||| ||||||||| | |||||       |||||||||||||||||||| ||| || |||| |||||||||| ||| ||||    
T  19631748 aggaaaattctatggtgaagtcataagaatgacttttctggtgaagttaaatgaccaatcattgaacatttgtgtatttaatccatgtcac 19631838  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 1623315 - 1623279
Alignment:
Q  151 attttaggaaaattctatgatgaagtcatgaaaatga 187  Q
    ||||||||||||||||||  |||||||||||||||||    
T  1623315 attttaggaaaattctatagtgaagtcatgaaaatga 1623279  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 2704506 - 2704595
Alignment:
Q  151 attttaggaaaattctatgatgaagtcatgaaaatgannnnnnnggtgaagttaaatgaccaattattaaatatttatgtatttaattca 240  Q
    |||| ||||||||| |||| |||||||||||||||||       ||||||||||||||| |||| ||| ||||||| |||||||||||||    
T  2704506 atttaaggaaaattttatggtgaagtcatgaaaatgacttttctggtgaagttaaatgatcaatcattgaatatttgtgtatttaattca 2704595  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 9743590 - 9743668
Alignment:
Q  159 aaaattctatgatgaagtcatgaaaatgannnnnnnggtgaagttaaatgaccaattattaaatatttatgtatttaat 237  Q
    ||||||||||| | |||||||| ||||||       |||||| ||||||||||||||||| || |||| ||||||||||    
T  9743590 aaaattctatggtaaagtcatgtaaatgacttttttggtgaaattaaatgaccaattattgaacatttgtgtatttaat 9743668  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 35025801 - 35025769
Alignment:
Q  155 taggaaaattctatgatgaagtcatgaaaatga 187  Q
    ||||||||||||||| |||||||||||||||||    
T  35025801 taggaaaattctatgctgaagtcatgaaaatga 35025769  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 47930714 - 47930634
Alignment:
Q  157 ggaaaattctatgatgaagtcatgaaaatgannnnnnnggtgaagttaaatgaccaattattaaatatttatgtatttaat 237  Q
    ||||||||||||| |||||||||||||||||       |||||||||||||||||||| ||| || |||| ||||||||||    
T  47930714 ggaaaattctatggtgaagtcatgaaaatgatttttctggtgaagttaaatgaccaatcattgaacatttgtgtatttaat 47930634  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 19606961 - 19606879
Alignment:
Q  158 gaaaattctatgatgaagtcatgaaaatgannnnnnnggtgaagttaaatgaccaattattaaatatttatgtatttaattca 240  Q
    |||||||||||| |||||| || |||||||       |||||||||||||||||||| ||| |  |||| |||||||||||||    
T  19606961 gaaaattctatggtgaagttataaaaatgacttttctggtgaagttaaatgaccaatgattgagcatttgtgtatttaattca 19606879  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 4108961 - 4108879
Alignment:
Q  156 aggaaaattctatgatgaagtcatgaaaatgannnnnnnggtgaagttaaatgaccaattattaaatatttatgtatttaatt 238  Q
    ||||||||| |||| |||||||||||||||||       ||| |||||||||||||||| ||| ||||||| |||||||||||    
T  4108961 aggaaaattttatggtgaagtcatgaaaatgacttttttggtaaagttaaatgaccaatcattgaatatttgtgtatttaatt 4108879  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 28221003 - 28220934
Alignment:
Q  157 ggaaaattctatgatgaagtcatgaaaatgannnnnnnggtgaagttaaatgaccaattattaaatattt 226  Q
    ||||||||||||||| |||||||||||||||       |||||||||||||||||||| ||| |||||||    
T  28221003 ggaaaattctatgataaagtcatgaaaatgacttttctggtgaagttaaatgaccaatcattgaatattt 28220934  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 23176805 - 23176722
Alignment:
Q  163 ttctatgatgaagtcatgaaaatgannnnnnnggtgaagttaaatgaccaattattaaatatttatgtatttaattcatctcac 246  Q
    ||||||| |||||||||||||||||       |||||||||||||||||||| ||| ||||||| |||| ||||| ||| ||||    
T  23176805 ttctatggtgaagtcatgaaaatgacttttttggtgaagttaaatgaccaatcattgaatatttgtgtacttaatgcatgtcac 23176722  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 8151453 - 8151371
Alignment:
Q  164 tctatgatgaagtcatgaaaatgannnnnnnggtgaagttaaatgaccaattattaaatatttatgtatttaattcatctcac 246  Q
    |||||| || ||||||||||||||       |||||||||||||||||||| ||| ||||||| || ||||||| ||| ||||    
T  8151453 tctatggtgcagtcatgaaaatgacttttttggtgaagttaaatgaccaatcattgaatatttgtgcatttaatccatgtcac 8151371  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 16447069 - 16447036
Alignment:
Q  154 ttaggaaaattctatgatgaagtcatgaaaatga 187  Q
    |||||||||||||||| |||||||||||||||||    
T  16447069 ttaggaaaattctatggtgaagtcatgaaaatga 16447036  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 13876969 - 13876887
Alignment:
Q  155 taggaaaattctatgatgaagtcatgaaaatgannnnnnnggtgaagttaaatgaccaattattaaatatttatgtatttaat 237  Q
    ||||||||||||||| |||||| ||||||||||       ||||||||||||||| |||| ||| | ||||| ||||||||||    
T  13876969 taggaaaattctatggtgaagttatgaaaatgacttttatggtgaagttaaatgatcaatcattgagtatttgtgtatttaat 13876887  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 2959742 - 2959774
Alignment:
Q  155 taggaaaattctatgatgaagtcatgaaaatga 187  Q
    ||||||||||||||| |||||||||||||||||    
T  2959742 taggaaaattctatggtgaagtcatgaaaatga 2959774  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 267278 - 267310
Alignment:
Q  153 tttaggaaaattctatgatgaagtcatgaaaat 185  Q
    ||||||||||||||||| |||||||||||||||    
T  267278 tttaggaaaattctatggtgaagtcatgaaaat 267310  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 241071 - 241039
Alignment:
Q  155 taggaaaattctatgatgaagtcatgaaaatga 187  Q
    ||||||||||||||| |||||||||||||||||    
T  241071 taggaaaattctatggtgaagtcatgaaaatga 241039  T

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