View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10162_low_26 (Length: 247)
Name: NF10162_low_26
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10162_low_26 |
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| [»] scaffold0137 (2 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 2514 - 2274
Alignment:
| Q |
1 |
aagagaagaaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatgctgcagccaatttcca |
100 |
Q |
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| T |
2514 |
aagagaagaaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatgctgcagccactttcca |
2415 |
T |
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| Q |
101 |
tccaagcattttacatcaagaagattatatatgtatagtgacaccagagaatttggaagcaatggcacattcatttccataaatgcattcaaaagatcat |
200 |
Q |
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| T |
2414 |
tccaagcattttacatcaagaagattatatatgtatagtgacaccagagaatttggaagcaatggcacattcatttccataagtgcattcaaaagatcat |
2315 |
T |
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| Q |
201 |
cacctccaatgtgcaatgttgtaagaaaagtgagcctttgc |
241 |
Q |
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| T |
2314 |
cacctccaatgcgcaatgttgtaagaaaagtgagcctttgc |
2274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 17640 - 17732
Alignment:
| Q |
1 |
aagagaagaaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatgctgcagcca |
93 |
Q |
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| T |
17640 |
aagagaggaaggcagtccctcttccggtaaggattcaagccggcgacaatctgaaatctcaaggttttcaagagacgtgagatgctgaagcca |
17732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 3888171 - 3887931
Alignment:
| Q |
1 |
aagagaagaaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatgctgcagccaatttcca |
100 |
Q |
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| T |
3888171 |
aagagaagaaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatgctgcagccactttcca |
3888072 |
T |
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| Q |
101 |
tccaagcattttacatcaagaagattatatatgtatagtgacaccagagaatttggaagcaatggcacattcatttccataaatgcattcaaaagatcat |
200 |
Q |
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| T |
3888071 |
tccaagcattttacatcaagaagattatatatgtatagtgacaccagagaatttggaagcaatggcacattcatttccataagtgcattcaaaagatcat |
3887972 |
T |
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| Q |
201 |
cacctccaatgtgcaatgttgtaagaaaagtgagcctttgc |
241 |
Q |
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| T |
3887971 |
cacctccaatgcgcaatgttgtaagaaaagtgagcctttgc |
3887931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 3910808 - 3910900
Alignment:
| Q |
1 |
aagagaagaaggaagtccctcttctggcaaggattcgagttttcgacagtatgcaatctcaaggttttcaagagatgtgagatgctgcagcca |
93 |
Q |
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| T |
3910808 |
aagagaggaaggcagtccctcttccggtaaggattcaagccggcgacaatctgaaatctcaaggttttcaagagacgtgagatgctgaagcca |
3910900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 3907388 - 3907350
Alignment:
| Q |
55 |
aatctcaaggttttcaagagatgtgagatgctgcagcca |
93 |
Q |
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| T |
3907388 |
aatctcaaggttttcaagagacgtgagatgctgaagcca |
3907350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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