View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10162_low_28 (Length: 241)
Name: NF10162_low_28
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10162_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 42414100 - 42413879
Alignment:
| Q |
18 |
aactagatagattaacaatccaaccctccctaactgatatacaagaaacatcgaaaagcaagtcaagaaatctggtagcagtacaacttcacacaatcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42414100 |
aactagatagattaacaatccaaccctccctaactgatatacaagaaacatcgaaaagcaagtcaagaaatctggtagcagtacaacttcacacaatcat |
42414001 |
T |
|
| Q |
118 |
cttgcttttctataatttccaggccaagagtttagttcgggcagaccaccattttggtccctgaaagtgtaactcactgtcacaataatccaggacacac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42414000 |
cttgcttttctataatttccaggccaagagtttagttcgggcagaccaccattttggtccctgaaagtgtaactcactgtcacaataatccaggacacac |
42413901 |
T |
|
| Q |
218 |
gaaaacacaaaacaatctctga |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42413900 |
gaaaacacaaaacaatctctga |
42413879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 14242870 - 14242834
Alignment:
| Q |
165 |
accattttggtccctgaaagtgtaactcactgtcaca |
201 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
14242870 |
accattttggtccctaaaagtgtaactcgctgtcaca |
14242834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University