View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10162_low_3 (Length: 556)

Name: NF10162_low_3
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10162_low_3
NF10162_low_3
[»] chr8 (9 HSPs)
chr8 (210-540)||(12664163-12664493)
chr8 (389-540)||(27267883-27268034)
chr8 (389-540)||(6579450-6579601)
chr8 (12-83)||(12664537-12664608)
chr8 (69-171)||(32574468-32574570)
chr8 (328-385)||(6579622-6579679)
chr8 (333-381)||(27267810-27267858)
chr8 (113-171)||(4638727-4638786)
chr8 (110-152)||(27015389-27015431)
[»] chr4 (4 HSPs)
chr4 (389-540)||(29711097-29711248)
chr4 (77-152)||(35534378-35534453)
chr4 (328-385)||(29711269-29711326)
chr4 (113-171)||(1975469-1975528)
[»] chr6 (2 HSPs)
chr6 (69-171)||(1619780-1619882)
chr6 (113-171)||(19962466-19962525)
[»] chr3 (1 HSPs)
chr3 (113-171)||(44198144-44198203)
[»] chr7 (3 HSPs)
chr7 (360-539)||(37276178-37276357)
chr7 (499-540)||(9253071-9253112)
chr7 (499-540)||(9317137-9317178)


Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 210 - 540
Target Start/End: Complemental strand, 12664493 - 12664163
Alignment:
Q  210 aaaagggttgtatctcacatttgcactgattcgacagtcatcaatttttgaatgggaagtgcgaattcgcaatgaagcaatgatcttataagtgattcgt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  12664493 aaaagggttgtatctcacatttgcactgattcgacagtcatcaatttttgaatgggaagtgcgaatttgcaatgaagcaatgatcttataagtgattctt 12664394  T
Q  310 tgttataaatgattttactgaaatttgttgattgttgtaggttcgacgtgatcaaaatgatttagatcgatttaagtagtgaaaggtgcgaattcgttgt 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||    
T  12664393 tgttataaatgattttactgaaatttgttgattgttgtaggttcgacgtgatcaaaatgatttagatcgatttaagcagcgaaaggtgtgaatttgttgt 12664294  T
Q  410 catctttaacaacttcatcatctaaatggttttatggagcctccaatcacgctccaagttcgccggcgtcttcgtcaatgcgtaggaaaccgtaacagtt 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  12664293 catctttaacaacttcatcatctaaatggttttatggagcctccaatcacgctccaagttcgccggcgtcttcgtcgatgcgtaagaaaccgtaacagtt 12664194  T
Q  510 ttatctagaggttgtgccattggattctcat 540  Q
    |||||||||||||||||||||||||||||||    
T  12664193 ttatctagaggttgtgccattggattctcat 12664163  T

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Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 389 - 540
Target Start/End: Original strand, 27267883 - 27268034
Alignment:
Q  389 tgaaaggtgcgaattcgttgtcatctttaacaacttcatcatctaaatggttttatggagcctccaatcacgctccaagttcgccggcgtcttcgtcaat 488  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  27267883 tgaaaggtgcgaattcgtcgtcatctttaacaacttcgtcatctaaatggttttatggagcctccaatcacgctccaagttcacctgcgtcttcgtcaat 27267982  T
Q  489 gcgtaggaaaccgtaacagttttatctagaggttgtgccattggattctcat 540  Q
    ||||||||| ||||||||||| |||| |||||||||||||||||||||||||    
T  27267983 gcgtaggaagccgtaacagttatatccagaggttgtgccattggattctcat 27268034  T

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Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 389 - 540
Target Start/End: Complemental strand, 6579601 - 6579450
Alignment:
Q  389 tgaaaggtgcgaattcgttgtcatctttaacaacttcatcatctaaatggttttatggagcctccaatcacgctccaagttcgccggcgtcttcgtcaat 488  Q
    |||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || |||| |||||||||    
T  6579601 tgaaaggtgcgaattcgccgtcatctttaacaacttcgtcatctaaatggttttatggagtctccaatcacgctccaagttcacctgcgtattcgtcaat 6579502  T
Q  489 gcgtaggaaaccgtaacagttttatctagaggttgtgccattggattctcat 540  Q
    ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||    
T  6579501 gcgtaggaagccgtaacagttatatctagaggttgtgtcattggattctcat 6579450  T

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Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 12664608 - 12664537
Alignment:
Q  12 atgaattatacgtgagattttggtcaattaattggatatcatatgcttccttaactaatctaatatactata 83  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  12664608 atgaattatacgtgagattttggtcaattaattgaatatcatatgcttccttatctaatctaatatactata 12664537  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 32574570 - 32574468
Alignment:
Q  69 atctaatatactatataggacaattcttgtccannnnnnnnaccattttgccctcataggggtattttggtaaattagtaaatgctgtctttccctatat 168  Q
    ||||| || ||||||||||||||||||||||||        ||||||||||||| |||||||||||||||||||||||||| ||||| ||||| || |||    
T  32574570 atctactaaactatataggacaattcttgtccattttttttaccattttgcccttataggggtattttggtaaattagtaattgctgcctttctctctat 32574471  T
Q  169 ata 171  Q
    |||    
T  32574470 ata 32574468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 6579679 - 6579622
Alignment:
Q  328 tgaaatttgttgattgttgtaggttcgacgtgatcaaaatgatttagatcgatttaag 385  Q
    ||||||||||||||||||||||| |||  ||||||||||||||| ||||||||| |||    
T  6579679 tgaaatttgttgattgttgtaggctcggtgtgatcaaaatgattcagatcgattgaag 6579622  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 27267810 - 27267858
Alignment:
Q  333 tttgttgattgttgtaggttcgacgtgatcaaaatgatttagatcgatt 381  Q
    ||||||||||||||||||||||  ||||||||||||||| |||||||||    
T  27267810 tttgttgattgttgtaggttcggtgtgatcaaaatgattcagatcgatt 27267858  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 4638786 - 4638727
Alignment:
Q  113 attttgccctcataggggtattttggtaaattagtaaatgctgtcttt-ccctatatata 171  Q
    |||||||||| |||||||||||| |||||||||| ||||||| ||||| |||||||||||    
T  4638786 attttgcccttataggggtatttaggtaaattagaaaatgctctctttcccctatatata 4638727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 27015431 - 27015389
Alignment:
Q  110 accattttgccctcataggggtattttggtaaattagtaaatg 152  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  27015431 accattttgcccttatgggggtattttggtaaattagtaaatg 27015389  T

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Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 389 - 540
Target Start/End: Complemental strand, 29711248 - 29711097
Alignment:
Q  389 tgaaaggtgcgaattcgttgtcatctttaacaacttcatcatctaaatggttttatggagcctccaatcacgctccaagttcgccggcgtcttcgtcaat 488  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  29711248 tgaaaggtgcgaattcgctgtcatctttaacaacttcgtcatctaaatggttttatggagcctccaatcacgctccaagttcacctgcgtcttcgtcaat 29711149  T
Q  489 gcgtaggaaaccgtaacagttttatctagaggttgtgccattggattctcat 540  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||||||||||    
T  29711148 gcgtaggaagccgtaacagttatatctagaggttgtaccattggattctcat 29711097  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 35534378 - 35534453
Alignment:
Q  77 tactatataggacaattcttgtccannnnnnnnaccattttgccctcataggggtattttggtaaattagtaaatg 152  Q
    ||||||||||||||||||||||||         ||||||||||| | |||||||||||||||||||||||||||||    
T  35534378 tactatataggacaattcttgtccctttttttgaccattttgcctttataggggtattttggtaaattagtaaatg 35534453  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 29711326 - 29711269
Alignment:
Q  328 tgaaatttgttgattgttgtaggttcgacgtgatcaaaatgatttagatcgatttaag 385  Q
    ||||||||||||||||||||||| |||  ||||||||||||||| ||||||||| |||    
T  29711326 tgaaatttgttgattgttgtaggctcggtgtgatcaaaatgattcagatcgattgaag 29711269  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 1975528 - 1975469
Alignment:
Q  113 attttgccctcataggggtattttggtaaattagtaaatgctgtcttt-ccctatatata 171  Q
    |||||||||| || ||| ||||||||||||||||||| ||||| |||| |||||||||||    
T  1975528 attttgcccttatggggttattttggtaaattagtaattgctgcctttgccctatatata 1975469  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 1619882 - 1619780
Alignment:
Q  69 atctaatatactatataggacaattcttgtccannnnnnnnaccattttgccctcataggggtattttggtaaattagtaaatgctgtctttccctatat 168  Q
    ||||| || ||||||||||||||||||||||||        ||||||||||||| |||||||||||||||||||||||||| || || ||||| || |||    
T  1619882 atctactaaactatataggacaattcttgtccattttttttaccattttgcccttataggggtattttggtaaattagtaattgttgcctttctctctat 1619783  T
Q  169 ata 171  Q
    |||    
T  1619782 ata 1619780  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 19962466 - 19962525
Alignment:
Q  113 attttgccctcataggggtattttggtaaattagtaaatgctgtcttt-ccctatatata 171  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||    
T  19962466 attttgcccttataggggtattttggtaaattagtaaatgctgcctttcccctatatata 19962525  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 44198203 - 44198144
Alignment:
Q  113 attttgccctcataggggtattttggtaaattagtaaatgctgtctttccc-tatatata 171  Q
    |||||||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||    
T  44198203 attttgcccttatagaggtattttggtaaattagtaaatgctgcctttcccatatatata 44198144  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 539
Target Start/End: Complemental strand, 37276357 - 37276178
Alignment:
Q  360 atcaaaatgatttagatcgatttaagtagtgaaaggtgcgaattcgttgtcatctttaacaacttcatcatctaaatggttttatggagcctccaatcac 459  Q
    ||||||| ||||| ||||||||  || |  ||||||||  ||||||   ||||||| ||||||||| |||||||||  |||| | | | | |||||| |     
T  37276357 atcaaaacgatttggatcgattggaggaacgaaaggtgtcaattcgccttcatcttcaacaacttcgtcatctaaacagtttcacgaaacttccaatgat 37276258  T
Q  460 gctccaagttcgccggcgtcttcgtcaatgcgtaggaaaccgtaacagttttatctagaggttgtgccattggattctca 539  Q
    ||||| |||||||||||||| |||||| |||| || || ||| | |||||||||| |||   |||||| |||||||||||    
T  37276257 gctccgagttcgccggcgtcgtcgtcagtgcggagtaagccgcagcagttttatccagaaactgtgccgttggattctca 37276178  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 499 - 540
Target Start/End: Original strand, 9253071 - 9253112
Alignment:
Q  499 ccgtaacagttttatctagaggttgtgccattggattctcat 540  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  9253071 ccgtaacagttttatctagaagttgtaccattggattctcat 9253112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 540
Target Start/End: Complemental strand, 9317178 - 9317137
Alignment:
Q  499 ccgtaacagttttatctagaggttgtgccattggattctcat 540  Q
    |||||||||||||||||||| ||||| | |||||||||||||    
T  9317178 ccgtaacagttttatctagaagttgtactattggattctcat 9317137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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