View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10162_low_4 (Length: 493)
Name: NF10162_low_4
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10162_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 16 - 483
Target Start/End: Original strand, 13078708 - 13079175
Alignment:
| Q |
16 |
tcttgtgctcttcttctcgaggaatttctggcttcaaagtttccttcatttcaatcaaattttggacatcttttgtaggatcttccctctttgattctat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13078708 |
tcttgtgctcttcttctcgaggaatttctggcttcaaagtttccttcatttcaatcaaattttggacatcttttgtaggatcttccctctttgattctat |
13078807 |
T |
|
| Q |
116 |
ggaacctttgtaatttgctttgttaccttcacaaaatttatctttttcttcaacttcagattgttgacttgattgaaaccttagtgttgatagcggttta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13078808 |
ggaacctttgtaatttgctttgttaccttcacaaaatttatctttttcttcaacttcagattgttgacttgattgaaaccttagtgttgatagcggttta |
13078907 |
T |
|
| Q |
216 |
accactttatcttctatagattcaacctcttttggactcatactttcatcttttgattcttgtgtctccttgttttgaaattttggaggtagcgcctttg |
315 |
Q |
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| T |
13078908 |
accactttatcttctatagattcaacctcttttggactcatactttcatcttttgattcttgtgtctccttgttttcaaattttggaggtagcgcctttg |
13079007 |
T |
|
| Q |
316 |
tgttctgcttcttatcctttgcactcttatattcaaactccttaaatccaatactttctactgttgaatatgtagcagggcctctttcacattgcaattc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13079008 |
tgttctgcttcttatcctttgcactcttatattcaaactccttaaatccaatactttctactgttgaatatgtagcagggcctctttcacattgcaattc |
13079107 |
T |
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| Q |
416 |
tcgttcagacgttcttgtgtctattccttttggatcttttgccttttgtacttgaggttcttcctttg |
483 |
Q |
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| T |
13079108 |
tcgttcagacgttcttgtgtctattccttttggatcttttgccttttgtacttgaggttcttcctttg |
13079175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 22 - 483
Target Start/End: Original strand, 13074510 - 13074971
Alignment:
| Q |
22 |
gctcttcttctcgaggaatttctggcttcaaagtttccttcatttcaatcaaattttggacatcttttgtaggatcttccctctttgattctatggaacc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13074510 |
gctcttcttctcgaggaatttctggcttcaaagtttccttcatttcaatcaaattttgaacatcttttgtaggatcttccctctttgattctatggaacc |
13074609 |
T |
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| Q |
122 |
tttgtaatttgctttgttaccttcacaaaatttatctttttcttcaacttcagattgttgacttgattgaaaccttagtgttgatagcggtttaaccact |
221 |
Q |
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| T |
13074610 |
tttgtaatttgctttgttaccttcacaaaatttatctttttcttcaacttcagattgttgacttgattgaaaacttagtgttgataaaggtttaaccact |
13074709 |
T |
|
| Q |
222 |
ttatcttctatagattcaacctcttttggactcatactttcatcttttgattcttgtgtctccttgttttgaaattttggaggtagcgcctttgtgttct |
321 |
Q |
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| T |
13074710 |
ttatcttctatagattcaacctcttttgaactcatactttcatcttttgattcttgagtctccttgttttaaaattttggaggtagcgcctttgtattct |
13074809 |
T |
|
| Q |
322 |
gcttcttatcctttgcactcttatattcaaactccttaaatccaatactttctactgttgaatatgtagcagggcctctttcacattgcaattctcgttc |
421 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13074810 |
gcttcttatcctttgcactcttatattaaaactccttaaatccaatactttctactgttgaatatgtagaagggcctctttcacattgcaattctcgttc |
13074909 |
T |
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| Q |
422 |
agacgttcttgtgtctattccttttggatcttttgccttttgtacttgaggttcttcctttg |
483 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13074910 |
agacgttcttgtatctattccttttaaatcttttgccttttgtacttgaggttcttcctttg |
13074971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 23080859 - 23080810
Alignment:
| Q |
133 |
ctttgttaccttcacaaaatttatctttttcttcaacttcagattgttga |
182 |
Q |
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||||| |||||||||| | ||||||||||||||||||||||| ||||||| |
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| T |
23080859 |
ctttgataccttcacatagtttatctttttcttcaacttcagtttgttga |
23080810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 23083217 - 23083168
Alignment:
| Q |
133 |
ctttgttaccttcacaaaatttatctttttcttcaacttcagattgttga |
182 |
Q |
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| T |
23083217 |
ctttgataccttcacatagtttatctttttcttcaacttcagtttgttga |
23083168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 36889206 - 36889157
Alignment:
| Q |
133 |
ctttgttaccttcacaaaatttatctttttcttcaacttcagattgttga |
182 |
Q |
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||||| |||||||||| | |||| |||||||||||||||||| ||||||| |
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| T |
36889206 |
ctttgataccttcacatagtttaactttttcttcaacttcagtttgttga |
36889157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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