View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10162_low_6 (Length: 442)
Name: NF10162_low_6
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10162_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 39533257 - 39533490
Alignment:
| Q |
19 |
ctttccgtgcatatgtatttgaaaatttaaataagtgaataattaatactttttgaagtgatatggatctttactcttagtgaattaaatgtcagatgca |
118 |
Q |
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| T |
39533257 |
ctttccgtgcatatgtattttaaaatttaaataagtgaataattaatactttttgaagtgatatggatctttactcttagtgaattaaatgtcagatgca |
39533356 |
T |
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| Q |
119 |
cggggatagaaaactcggtatcattctatatcttcttcttccagtcacctccatgattttccgtataatgttgttaggttgttctcttgttgtacaatcc |
218 |
Q |
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| T |
39533357 |
cggggatagaaaactcggtatcattctatatcttcttcttccagtcacctccatgattttccgtataatgttgtgaggttgttgtcttgttgtacaatcc |
39533456 |
T |
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| Q |
219 |
atattccattcttacgacgaggaggtatcgtttc |
252 |
Q |
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| T |
39533457 |
atattccattcttacgacgaggaggtatcgtttc |
39533490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 324 - 438
Target Start/End: Original strand, 39533562 - 39533676
Alignment:
| Q |
324 |
gaatcggaatcgtaaagtcaatccaacgaatccattttcagaaattccaacgttctattccattatctattgttcttttagcaaatatctgacaatcttg |
423 |
Q |
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| T |
39533562 |
gaatcggaatcgtaaagtcaatccaacgaatccattttcagaaattccaacgttctattccattatctattgttcttttagcaaatatctgacaatcttg |
39533661 |
T |
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| Q |
424 |
tgttctctgcttctc |
438 |
Q |
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| T |
39533662 |
tgttctttgcttctc |
39533676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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