View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10162_low_7 (Length: 427)

Name: NF10162_low_7
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10162_low_7
NF10162_low_7
[»] chr7 (3 HSPs)
chr7 (7-424)||(32817440-32817860)
chr7 (116-216)||(11634813-11634913)
chr7 (263-302)||(9736597-9736636)
[»] chr6 (1 HSPs)
chr6 (265-424)||(17512588-17512745)
[»] chr5 (8 HSPs)
chr5 (263-399)||(26652362-26652496)
chr5 (263-399)||(26923947-26924081)
chr5 (283-400)||(22457891-22458009)
chr5 (283-400)||(22448573-22448691)
chr5 (313-415)||(11223092-11223191)
chr5 (116-216)||(13815843-13815942)
chr5 (117-216)||(24244526-24244625)
chr5 (117-216)||(24291150-24291249)
[»] chr3 (1 HSPs)
chr3 (198-414)||(13328651-13328870)
[»] scaffold0053 (1 HSPs)
scaffold0053 (283-400)||(2504-2622)
[»] scaffold0010 (1 HSPs)
scaffold0010 (127-245)||(256572-256690)
[»] chr4 (2 HSPs)
chr4 (263-415)||(50516830-50516967)
chr4 (265-415)||(11481981-11482129)
[»] chr8 (10 HSPs)
chr8 (116-216)||(18241982-18242082)
chr8 (283-400)||(24633794-24633912)
chr8 (283-400)||(33592378-33592496)
chr8 (283-400)||(33602017-33602135)
chr8 (283-400)||(42896393-42896511)
chr8 (116-245)||(18883615-18883744)
chr8 (116-216)||(18251433-18251533)
chr8 (116-216)||(18232531-18232631)
chr8 (263-415)||(12767325-12767487)
chr8 (283-331)||(31575816-31575865)
[»] scaffold0334 (1 HSPs)
scaffold0334 (283-400)||(12791-12905)
[»] chr1 (1 HSPs)
chr1 (283-400)||(21919674-21919792)


Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 7 - 424
Target Start/End: Original strand, 32817440 - 32817860
Alignment:
Q  7 cctagcaaatggttacagctcaacaacacgatgcaaaacgtgtgaactttggcacaagaaagatggaacaaagaaagcacgttctcttgacagcttgtgc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32817440 cctagcaaatggttacagctcaacaacacgatgcaaaacgtgtgaactttggcacaagaaagatggaacaaagaaagcacgttctcttgacagcttgtgc 32817539  T
Q  107 acccattctccaagcaatctttggagcacatttttcagtttgaaaaggtttcaaacaactctctcatgacttgtcctccaaggttattcatgctctataa 206  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||    
T  32817540 acccattctccaagcaatctttggagcgcatttttcagtttgaaaaggtttcaaacaactctcccatgacttgtccttcaaggttattcatgctctacaa 32817639  T
Q  207 atagaagaggacttcgaaggtaaaatataagagttttgataaataaaa-ctttgata--tctctctcaaagttaaagaaatcaatctcttcatcaatctt 303  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  32817640 atagaagaggactttgaaggtaaaagataagagttttgataaataaaagctttgatatctctctctcaaagttaaagaaatcaatctcttcatcaatctt 32817739  T
Q  304 tcaacaaatacaaagcaaactccataatgtttacttatatttatcatatttatctcatttatttgataacatctatttgagttagtatttgtaaaagaat 403  Q
    |||||||| ||||| |||| |||||||| |||   |||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||| ||    
T  32817740 tcaacaaacacaaaacaaattccataatctttcactatatttatcatctttatctcatttatttgagaacatctttttgagtttgtatttgtaaaaggat 32817839  T
Q  404 agtttatttgaggcggaaaga 424  Q
    ||||| |||||| || |||||    
T  32817840 agtttgtttgagacgcaaaga 32817860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 11634913 - 11634813
Alignment:
Q  116 ccaagcaatctttggagcacatttttcagtttgaaaaggtttcaaacaactctctcatgacttgtcctccaaggttattcatgctctataaatagaagag 215  Q
    ||||||||  |||||||| ||||||||||||||||| || |||||||| |||| |  |||| ||||||| |||| ||| | |||||||||||||||||||    
T  11634913 ccaagcaacttttggagcgcatttttcagtttgaaatggattcaaacagctcttttgtgacctgtcctcaaaggctatccgtgctctataaatagaagag 11634814  T
Q  216 g 216  Q
    |    
T  11634813 g 11634813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 9736597 - 9736636
Alignment:
Q  263 tctctctcaaagttaaagaaatcaatctcttcatcaatct 302  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  9736597 tctctctcaaagctaaagaaatcattctcttcatcaatct 9736636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 17512745 - 17512588
Alignment:
Q  265 tctctcaaagttaaagaaatcaatctcttcatcaa-tctttcaacaaatacaaagcaaactccataatgtttacttatatttatcatatttatctcattt 363  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||||  ||||||||||||||||||| |||   |||||||||||| ||||||   |||    
T  17512745 tctctcaaagttaaagaaatcaatctcttcaacatctctttcaacaatcacaaagcaaactccataatctttcactatatttatcatctttatc---ttt 17512649  T
Q  364 atttgataacatctatttgagttagtatttgtaaaagaatagtttatttgaggcggaaaga 424  Q
      |||| ||||||| | |||||| ||||||||||||| ||||||| |||||| || |||||    
T  17512648 cattgagaacatctttctgagtttgtatttgtaaaaggatagtttgtttgagacgcaaaga 17512588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 263 - 399
Target Start/End: Original strand, 26652362 - 26652496
Alignment:
Q  263 tctctctcaaagttaaagaaatcaatctcttcatcaatctttcaacaaatacaaagcaaactccataatgtttacttatatttatcatatttatctcatt 362  Q
    |||||||||||| ||||||||||||| ||||||||||||||| |||||| ||||||||||||||||| | |||   ||||||  | || |||||||||||    
T  26652362 tctctctcaaagctaaagaaatcaatatcttcatcaatcttttaacaaacacaaagcaaactccatactctttcactatatt--ttatctttatctcatt 26652459  T
Q  363 tatttgataacatctatttgagttagtatttgtaaaa 399  Q
    || |||| ||||||| |||||||| || |||||||||    
T  26652460 taattgagaacatctttttgagtttgtgtttgtaaaa 26652496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 263 - 399
Target Start/End: Original strand, 26923947 - 26924081
Alignment:
Q  263 tctctctcaaagttaaagaaatcaatctcttcatcaatctttcaacaaatacaaagcaaactccataatgtttacttatatttatcatatttatctcatt 362  Q
    |||||||||||| ||||||||||||| ||||||||||||||| |||||| ||||||||||||||||| | |||   ||||||  | || |||||||||||    
T  26923947 tctctctcaaagctaaagaaatcaatatcttcatcaatcttttaacaaacacaaagcaaactccatactctttcactatatt--ttatctttatctcatt 26924044  T
Q  363 tatttgataacatctatttgagttagtatttgtaaaa 399  Q
    || |||| ||||||| |||||||| || |||||||||    
T  26924045 taattgagaacatctttttgagtttgtgtttgtaaaa 26924081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 400
Target Start/End: Complemental strand, 22458009 - 22457891
Alignment:
Q  283 atcaatctcttcatcaatctttcaacaaata-caaagcaaactccataatgtttacttatatttatcatatttatctcatttatttgataacatctattt 381  Q
    ||||||||||||||||||||||| ||||  | |||||||||||||||||| |||   |||||||||||| |||||||| ||||||||| || |||| |||    
T  22458009 atcaatctcttcatcaatctttctacaacaagcaaagcaaactccataatctttcactatatttatcatctttatctcttttatttgagaatatcttttt 22457910  T
Q  382 gagttagtatttgtaaaag 400  Q
    ||||| || ||||||||||    
T  22457909 gagtttgtctttgtaaaag 22457891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 283 - 400
Target Start/End: Complemental strand, 22448691 - 22448573
Alignment:
Q  283 atcaatctcttcatcaatctttcaacaaata-caaagcaaactccataatgtttacttatatttatcatatttatctcatttatttgataacatctattt 381  Q
    ||||||||||||||||||||||| ||||  | |||||||||||||||||| |||   |||||||||||| |||||||| ||||||||| || |||| |||    
T  22448691 atcaatctcttcatcaatctttctacaacaagcaaagcaaactccataatctttcactatatttatcatctttatctcttttatttgagaatatcttttt 22448592  T
Q  382 gagttagtatttgtaaaag 400  Q
    ||||| |  ||||||||||    
T  22448591 gagtttgcctttgtaaaag 22448573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 415
Target Start/End: Original strand, 11223092 - 11223191
Alignment:
Q  313 acaaagcaaactccataatgtttacttatatttatcatatttatctcatttatttgataacatctatttgagttagtatttgtaaaagaatagtttattt 412  Q
    ||||||||||||||||||| |||   |||||||||||| ||||||||   |  |||| ||||||| |||||||| ||||||||||||| ||||||| |||    
T  11223092 acaaagcaaactccataatctttcactatatttatcatctttatctc---tcattgagaacatctttttgagtttgtatttgtaaaaggatagtttgttt 11223188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 13815942 - 13815843
Alignment:
Q  116 ccaagcaatctttggagcacatttttcagtttgaaaaggtttcaaacaactctctcatgacttgtcctccaaggttattcatgctctataaatagaagag 215  Q
    ||||||||  |||||||| ||||||| ||||||||| || ||||||||||||| | ||||| ||||||| ||||  |||| | |||||||||||||||||    
T  13815942 ccaagcaacttttggagcgcattttt-agtttgaaatggattcaaacaactcttttatgacctgtcctcaaaggccattcgtcctctataaatagaagag 13815844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 24244625 - 24244526
Alignment:
Q  117 caagcaatctttggagcacatttttcagtttgaaaaggtttcaaacaactctctcatgacttgtcctccaaggttattcatgctctataaatagaagagg 216  Q
    |||||||  |||||||| ||||||| ||||||||| || |||||||| |||| |  |||| ||||||| |||| ||| | ||||||||||||||||||||    
T  24244625 caagcaacttttggagcgcattttttagtttgaaatggattcaaacagctcttttgtgacctgtcctcaaaggctatccgtgctctataaatagaagagg 24244526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 24291249 - 24291150
Alignment:
Q  117 caagcaatctttggagcacatttttcagtttgaaaaggtttcaaacaactctctcatgacttgtcctccaaggttattcatgctctataaatagaagagg 216  Q
    |||||||  |||||||| ||||||| ||||||||| || |||||||| |||| |  |||| ||||||| |||| ||| | ||||||||||||||||||||    
T  24291249 caagcaacttttggagcgcattttttagtttgaaatggattcaaacagctcttttgtgacctgtcctcaaaggctatccgtgctctataaatagaagagg 24291150  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 414
Target Start/End: Complemental strand, 13328870 - 13328651
Alignment:
Q  198 gctctataaatagaagaggacttcgaaggtaaaatataagagttttgataaataaaa-ctttgatatc----tctctcaaagttaaagaaatcaatctct 292  Q
    ||||||||||||||||||| | | |||||  |||   ||||||||||||  | |||| ||||||||||    |||||||||| |||||||||||||||||    
T  13328870 gctctataaatagaagaggtcattgaaggagaaaagcaagagttttgatttacaaaagctttgatatctctttctctcaaagctaaagaaatcaatctct 13328771  T
Q  293 tcatca-atctttcaacaaatacaaagcaaactccataatgtttacttatatttatcatatttatctcatttatttgataacatctatttgagttagtat 391  Q
    ||| ||  |||||| ||||  ||||||||||||||||||| |||   |||||||||||| ||||||||   |  |||| ||||||| | |||||| ||||    
T  13328770 tcaacatctctttcgacaatcacaaagcaaactccataatctttcactatatttatcatctttatctc---tcattgagaacatctttctgagtttgtat 13328674  T
Q  392 ttgtaaaagaatagtttatttga 414  Q
    ||||| ||| ||||||| |||||    
T  13328673 ttgtacaaggatagtttgtttga 13328651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 400
Target Start/End: Complemental strand, 2622 - 2504
Alignment:
Q  283 atcaatctcttcatcaatctttcaacaaata-caaagcaaactccataatgtttacttatatttatcatatttatctcatttatttgataacatctattt 381  Q
    |||||| |||||||||||||||| ||||  | |||||||||||||||||| |||   |||||||||||| |||||||| ||||||||| || |||| |||    
T  2622 atcaatttcttcatcaatctttctacaacaagcaaagcaaactccataatctttcactatatttatcatctttatctcttttatttgagaatatcttttt 2523  T
Q  382 gagttagtatttgtaaaag 400  Q
    ||||| |  ||||||||||    
T  2522 gagtttgcctttgtaaaag 2504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 245
Target Start/End: Original strand, 256572 - 256690
Alignment:
Q  127 ttggagcacatttttcagtttgaaaaggtttcaaacaactctctcatgacttgtcctccaaggttattcatgctctataaatagaagaggacttcgaagg 226  Q
    ||||||| ||||||||||||||||| || |||||||| |||| |  |||| ||||||| |||| ||| |||||||||||||||||||||| | | |||||    
T  256572 ttggagcgcatttttcagtttgaaatggattcaaacagctcttttgtgacatgtcctcaaaggctatccatgctctataaatagaagaggtcattgaagg 256671  T
Q  227 taaaatataagagttttga 245  Q
    | |||   |||||||||||    
T  256672 ttaaaagcaagagttttga 256690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 415
Target Start/End: Complemental strand, 50516967 - 50516830
Alignment:
Q  263 tctctctcaaagttaaagaaatcaatctcttcatcaatctttcaacaaatacaaagcaaactccataatgttt-acttatatttatcatatttatctcat 361  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||           |||||| |||||| ||| |||| |||||||||||||||||||||    
T  50516967 tctctctcaaagctaaagaaatcaatctcttcatcaatcttttaa-----------caaacttcataatctttcactt-tatttatcatatttatctcat 50516880  T
Q  362 ttatttgataacatctatttgagttagtatttgtaaaagaatagtttatttgag 415  Q
    |||||||| || |||    |||||| ||||||||||||| ||||||| ||||||    
T  50516879 ttatttgagaaaatc----tgagtttgtatttgtaaaaggatagtttgtttgag 50516830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 415
Target Start/End: Original strand, 11481981 - 11482129
Alignment:
Q  265 tctctcaaagttaaagaaatcaatctcttcatcaa-tctttcaacaaatacaaagcaaactccataatgtttacttatatttatcatatttatctcattt 363  Q
    |||||||||| |||| ||||||||||||||  ||  |||||| ||||  ||||||||||||||||||| |||   |||||||||||| ||||||||   |    
T  11481981 tctctcaaagctaaaaaaatcaatctcttcgacatctctttcgacaatcacaaagcaaactccataatctttcactatatttatcatctttatctc---t 11482077  T
Q  364 atttgataacatctatttgagttagtatttgtaaaagaatagtttatttgag 415  Q
      |||| ||||||| | |||||| |||||| || ||| ||||||| ||||||    
T  11482078 cattgagaacatctttatgagtttgtatttatacaaggatagtttgtttgag 11482129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 18241982 - 18242082
Alignment:
Q  116 ccaagcaatctttggagcacatttttcagtttgaaaaggtttcaaacaactctctcatgacttgtcctccaaggttattcatgctctataaatagaagag 215  Q
    ||||||||  |||||||| ||||||||||||||||| || |||||||| |||| |  |||| ||||||| |||| ||| | |||||||||||||||||||    
T  18241982 ccaagcaacttttggagcgcatttttcagtttgaaatggattcaaacagctcttttgtgacctgtcctcaaaggctatccgtgctctataaatagaagag 18242081  T
Q  216 g 216  Q
    |    
T  18242082 g 18242082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 400
Target Start/End: Original strand, 24633794 - 24633912
Alignment:
Q  283 atcaatctcttcatcaatctttcaacaaatac-aaagcaaactccataatgtttacttatatttatcatatttatctcatttatttgataacatctattt 381  Q
    ||||||||||||||||||||||| ||||  |  ||||||||||||||||| |||    ||||||||||| |||||||| ||| ||||| || |||| |||    
T  24633794 atcaatctcttcatcaatctttctacaaccaagaaagcaaactccataatctttcaccatatttatcatctttatctcttttgtttgagaatatcttttt 24633893  T
Q  382 gagttagtatttgtaaaag 400  Q
    ||||| | |||||||||||    
T  24633894 gagtttgcatttgtaaaag 24633912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 400
Target Start/End: Complemental strand, 33592496 - 33592378
Alignment:
Q  283 atcaatctcttcatcaatctttcaacaaata-caaagcaaactccataatgtttacttatatttatcatatttatctcatttatttgataacatctattt 381  Q
    ||||||||||||| ||||||||| ||||  | |||||||||||||||||| |||   |||||||| ||| |||||||| ||||||||| || |||| |||    
T  33592496 atcaatctcttcaacaatctttctacaacaagcaaagcaaactccataatctttcactatatttaccatctttatctcttttatttgagaatatcttttt 33592397  T
Q  382 gagttagtatttgtaaaag 400  Q
    ||||| |  ||||||||||    
T  33592396 gagtttgcctttgtaaaag 33592378  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 400
Target Start/End: Complemental strand, 33602135 - 33602017
Alignment:
Q  283 atcaatctcttcatcaatctttcaacaaata-caaagcaaactccataatgtttacttatatttatcatatttatctcatttatttgataacatctattt 381  Q
    ||||||||||||| ||||||||| ||||  | |||||||||||||||||| |||   |||||||| ||| |||||||| ||||||||| || |||| |||    
T  33602135 atcaatctcttcaacaatctttctacaacaagcaaagcaaactccataatctttcactatatttaccatctttatctcttttatttgagaatatcttttt 33602036  T
Q  382 gagttagtatttgtaaaag 400  Q
    ||||| |  ||||||||||    
T  33602035 gagtttgcctttgtaaaag 33602017  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 400
Target Start/End: Complemental strand, 42896511 - 42896393
Alignment:
Q  283 atcaatctcttcatcaatctttcaacaaata-caaagcaaactccataatgtttacttatatttatcatatttatctcatttatttgataacatctattt 381  Q
    ||||||||||||| ||||||||| ||||  | |||||||||||||||||| |||   |||||||| ||| |||||||| ||||||||| || |||| |||    
T  42896511 atcaatctcttcaacaatctttctacaacaagcaaagcaaactccataatctttcactatatttaccatctttatctcttttatttgagaatatcttttt 42896412  T
Q  382 gagttagtatttgtaaaag 400  Q
    ||||| |  ||||||||||    
T  42896411 gagtttgcctttgtaaaag 42896393  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 245
Target Start/End: Complemental strand, 18883744 - 18883615
Alignment:
Q  116 ccaagcaatctttggagcacatttttcagtttgaaaaggtttcaaacaactctctcatgacttgtcctccaaggttattcatgctctataaatagaagag 215  Q
    ||||||||  |||||||| |||||||||||||||||  | |||||||| |||| |  |||| ||||||| |||| ||| | |||||||||||||||||||    
T  18883744 ccaagcaacttttggagcgcatttttcagtttgaaatagattcaaacagctcttttgtgacctgtcctcaaaggctatccgtgctctataaatagaagag 18883645  T
Q  216 gacttcgaaggtaaaatataagagttttga 245  Q
    | | | |||||| |||   |||||||||||    
T  18883644 gtcattgaaggttaaaagcaagagttttga 18883615  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 18251433 - 18251533
Alignment:
Q  116 ccaagcaatctttggagcacatttttcagtttgaaaaggtttcaaacaactctctcatgacttgtcctccaaggttattcatgctctataaatagaagag 215  Q
    ||||||||  |||||||| ||||||| ||||||||| || |||||||| |||| |  |||| ||||||| |||| ||| | |||||||||||||||||||    
T  18251433 ccaagcaacttttggagcgcattttttagtttgaaatggattcaaacagctcttttgtgacctgtcctcaaaggctatccgtgctctataaatagaagag 18251532  T
Q  216 g 216  Q
    |    
T  18251533 g 18251533  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 18232531 - 18232631
Alignment:
Q  116 ccaagcaatctttggagcacatttttcagtttgaaaaggtttcaaacaactctctcatgacttgtcctccaaggttattcatgctctataaatagaagag 215  Q
    ||||||||  |||||||| ||||||| ||||||||| || |||||||| |||| |  |||| ||||||| |||| |||   |||||||||||||||||||    
T  18232531 ccaagcaacttttggagcgcattttttagtttgaaatggattcaaacagctcttttgtgacctgtcctcaaaggctatctgtgctctataaatagaagag 18232630  T
Q  216 g 216  Q
    |    
T  18232631 g 18232631  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 415
Target Start/End: Original strand, 12767325 - 12767487
Alignment:
Q  263 tctctctcaaagttaaagaaatcaatctcttcatcaatct-ttcaaca-----------aat-acaaagcaaactccataatgtttacttatatttatca 349  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||||           ||| ||||||||||||||||||| |||   |||||||||||    
T  12767325 tctctctcaaagctaaagaaatcattctcttcatcaatctcttcaacatctctttcgacaatcacaaagcaaactccataatctttcactatatttatca 12767424  T
Q  350 tatttatctcatttatttgataacatctatttgagttagtatttgtaaaagaatagtttatttgag 415  Q
    | ||||||||   |  |||| ||||||| | |||||| ||||||||| ||| ||||||| ||||||    
T  12767425 tctttatctc---tcattgagaacatctttatgagtttgtatttgtacaaggatagtttttttgag 12767487  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 331
Target Start/End: Complemental strand, 31575865 - 31575816
Alignment:
Q  283 atcaatctcttcatcaatct-ttcaacaaatacaaagcaaactccataat 331  Q
    |||||||||||||||||||| ||| ||||  |||||||||||||||||||    
T  31575865 atcaatctcttcatcaatctcttctacaatcacaaagcaaactccataat 31575816  T

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Target: scaffold0334 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 400
Target Start/End: Complemental strand, 12905 - 12791
Alignment:
Q  283 atcaatctcttcatcaatctttcaacaaatacaaagcaaactccataatgtttacttatatttatcatatttatctcatttatttgataacatctatttg 382  Q
    ||||||||||||| ||||||||| ||||   |||||||||||||||||| |||   |||||||| ||| |||||||| ||||||||| || |||| ||||    
T  12905 atcaatctcttcaacaatctttctacaa---caaagcaaactccataatctttcactatatttaccatctttatctcttttatttgagaatatctttttg 12809  T
Q  383 agttagtatttgtaaaag 400  Q
    |||| |  ||||||||||    
T  12808 agtttgcctttgtaaaag 12791  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 400
Target Start/End: Complemental strand, 21919792 - 21919674
Alignment:
Q  283 atcaatctcttcatcaatctttcaacaaata-caaagcaaactccataatgtttacttatatttatcatatttatctcatttatttgataacatctattt 381  Q
    ||||||||||||| ||||||||| ||||  | |||||||||||||||||| |||   |||||||| ||| |||||||| ||||||||| || |||| |||    
T  21919792 atcaatctcttcaacaatctttctacaacaagcaaagcaaactccataatctttcactatatttaccatctttatctcttttatttgagaatatcttttt 21919693  T
Q  382 gagttagtatttgtaaaag 400  Q
    ||||| |  ||||||||||    
T  21919692 gagtttgcctttgtaaaag 21919674  T

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