View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10162_low_8 (Length: 421)

Name: NF10162_low_8
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10162_low_8
NF10162_low_8
[»] chr6 (56 HSPs)
chr6 (13-295)||(27663546-27663829)
chr6 (9-343)||(26951295-26951630)
chr6 (10-188)||(26850277-26850454)
chr6 (8-163)||(26885633-26885788)
chr6 (13-192)||(26978936-26979115)
chr6 (9-157)||(26960677-26960825)
chr6 (10-163)||(25075432-25075585)
chr6 (8-217)||(26657525-26657737)
chr6 (8-217)||(26763496-26763708)
chr6 (8-137)||(28787804-28787933)
chr6 (8-137)||(28793925-28794054)
chr6 (10-128)||(26637193-26637311)
chr6 (10-128)||(26743159-26743277)
chr6 (11-136)||(26624816-26624941)
chr6 (11-136)||(26730793-26730918)
chr6 (16-137)||(27609622-27609743)
chr6 (8-137)||(27704765-27704894)
chr6 (16-137)||(27717001-27717122)
chr6 (15-137)||(31286114-31286236)
chr6 (8-137)||(27680513-27680642)
chr6 (15-168)||(26648028-26648185)
chr6 (15-168)||(26753996-26754153)
chr6 (9-162)||(26863123-26863280)
chr6 (8-168)||(27529774-27529938)
chr6 (10-137)||(27591517-27591644)
chr6 (10-136)||(26813102-26813228)
chr6 (9-114)||(27697114-27697219)
chr6 (9-134)||(29827541-29827666)
chr6 (9-128)||(2186369-2186488)
chr6 (10-137)||(27603197-27603324)
chr6 (10-137)||(27676116-27676243)
chr6 (8-143)||(26144416-26144551)
chr6 (17-136)||(26804018-26804137)
chr6 (8-163)||(26825376-26825535)
chr6 (13-162)||(25491780-25491933)
chr6 (15-163)||(26938581-26938729)
chr6 (7-126)||(26057469-26057588)
chr6 (7-126)||(26077439-26077558)
chr6 (246-411)||(26960860-26961024)
chr6 (8-126)||(25546531-25546649)
chr6 (8-93)||(25512439-25512524)
chr6 (11-143)||(25581273-25581405)
chr6 (8-80)||(28150726-28150798)
chr6 (9-81)||(29842547-29842619)
chr6 (9-144)||(28096944-28097079)
chr6 (8-114)||(25484607-25484713)
chr6 (365-411)||(26850564-26850610)
chr6 (8-80)||(28141089-28141161)
chr6 (256-343)||(26979180-26979269)
chr6 (369-411)||(26979299-26979341)
chr6 (10-134)||(29469759-29469883)
chr6 (7-66)||(27426188-27426247)
chr6 (258-292)||(26850457-26850491)
chr6 (307-343)||(26813342-26813378)
chr6 (307-343)||(27663496-27663532)
chr6 (8-140)||(29673514-29673646)
[»] chr1 (6 HSPs)
chr1 (8-227)||(28126094-28126315)
chr1 (8-232)||(28131901-28132126)
chr1 (7-126)||(266862-266981)
chr1 (9-140)||(26137434-26137565)
chr1 (13-134)||(5921980-5922101)
chr1 (307-411)||(266585-266689)
[»] chr2 (2 HSPs)
chr2 (8-151)||(17991688-17991831)
chr2 (19-50)||(3281218-3281249)
[»] scaffold0349 (1 HSPs)
scaffold0349 (16-137)||(2041-2162)
[»] scaffold1870 (1 HSPs)
scaffold1870 (7-137)||(331-461)
[»] scaffold0419 (1 HSPs)
scaffold0419 (7-137)||(9049-9179)
[»] chr4 (14 HSPs)
chr4 (10-161)||(18653960-18654111)
chr4 (10-161)||(18678040-18678191)
chr4 (8-161)||(18729978-18730131)
chr4 (10-161)||(18722553-18722704)
chr4 (10-161)||(18688097-18688248)
chr4 (10-161)||(18697883-18698034)
chr4 (307-411)||(18653771-18653875)
chr4 (366-411)||(18697695-18697740)
chr4 (366-411)||(18722367-18722412)
chr4 (307-411)||(18677853-18677957)
chr4 (307-411)||(18687907-18688011)
chr4 (307-411)||(18729789-18729893)
chr4 (7-66)||(18075308-18075367)
chr4 (9-50)||(5089548-5089589)
[»] scaffold0277 (2 HSPs)
scaffold0277 (11-137)||(3205-3331)
scaffold0277 (11-137)||(12168-12294)
[»] chr8 (2 HSPs)
chr8 (19-137)||(29272340-29272458)
chr8 (9-66)||(16371707-16371764)
[»] chr5 (1 HSPs)
chr5 (8-134)||(16692412-16692538)
[»] scaffold0003 (1 HSPs)
scaffold0003 (7-66)||(61116-61175)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 6e-78; HSPs: 56)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 27663829 - 27663546
Alignment:
Q  13 acattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatgata 112  Q
    ||||||||||||||||||||  | ||||||| |||||| ||||| |||||||||||||||||||||||||| |||| |||| | ||| || |||||||||    
T  27663829 acattacatgacttgatagagtatatgggtatagaaatagtccgacaagaatcaattaaagagcctggagagcgcactaggttgtggcgtcatgatgata 27663730  T
Q  113 tagttcatgttttacaagaaaacacagtaagattaatatatatgaacaattcgttagtttagcgtaccatgactttgctctttttgaacttatatatgaa 212  Q
    ||| |||||||||| || |||||||||||||||| |||| ||||||||||| |||| |||||| |||||||||||| ||||||||| ||||||||||||     
T  27663729 tagctcatgttttaaaacaaaacacagtaagattgatatctatgaacaatttgttattttagcttaccatgactttcctctttttggacttatatatgac 27663630  T
Q  213 catctcgttctagttctttttagacttaattgc-tgtacatgttctagctctataagttatttgtattgtggttgattaatttt 295  Q
    |||||| | |||  |||||||| |||||||| | ||||||||||| ||||||||| |||||||||||| |||||||||||||||    
T  27663629 catctcatactaaatctttttacacttaattacatgtacatgttcaagctctatatgttatttgtattatggttgattaatttt 27663546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 26951295 - 26951630
Alignment:
Q  9 tgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgat 108  Q
    |||||||||||||||||||||||| || ||||||| ||||||| |||| ||||||||||||| ||| |||||||||||||||||| | |||| |  ||||    
T  26951295 tgtgacattacatgacttgatagaggatatgggtatagaaatcatccgacaagaatcaattagagaacctggagaacgcagtaggttgtggtctcgtgat 26951394  T
Q  109 gatatagttcatgttttacaagaaaacacagtaagattaatatatatgaacaattcgttagtttagcgtaccatgactttgctctttttgaacttatata 208  Q
    ||||| |||||||||||||||||||||||||||||||| |||| | |||||||||  ||| || | | |||||||||||||||  ||||| |||||||||    
T  26951395 gatattgttcatgttttacaagaaaacacagtaagattgatatctgtgaacaatttattatttaaacttaccatgactttgcttattttggacttatata 26951494  T
Q  209 tgaacatctcgttctagttctttttagacttaattgc-tgtacatgttctagctctataagttatttgtattgtggttgattaa-ttttaannnnnnnnn 306  Q
    |||  ||||| | ||| || ||||||  ||||||| |  |||||||||| |||||||||||||||||||||||||||||||||| |||||              
T  26951495 tgactatctcatactacttgttttta-ccttaattacaagtacatgttcaagctctataagttatttgtattgtggttgattaatttttatttatttttt 26951593  T
Q  307 gttaaaagggaagtagtaaaattgaaataatatatct 343  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  26951594 gttaaaagggaactagtaaaattgaaatgatatatct 26951630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 26850277 - 26850454
Alignment:
Q  10 gtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatg 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||   ||||||||| | ||||||| |||||    
T  26850277 gtgacattacatgacttgatagaggacatgggtaaagaaatcgtccgacaagaatcaattaaagagcctggaaggcgcagtaggttgtggtgttgtgatg 26850376  T
Q  110 atatagttcatgttttacaagaaaacacagtaagattaatatatatgaacaattcgttagtttagcgtaccatgacttt 188  Q
    |||| |||||||||||||||||||||||||||||||| || | ||||||||||| |||  |||||| ||||||||||||    
T  26850377 atattgttcatgttttacaagaaaacacagtaagattgatttctatgaacaatttgtt-ttttagcttaccatgacttt 26850454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 26885633 - 26885788
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    |||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||| | |||||| | ||    
T  26885633 atgtgacattacatgacttggtagaggacatgggtaaagaaatcgttcggcaagaatcaagtaaagagcctggagaacgtagtaggttatggtgtcacga 26885732  T
Q  108 tgatatagttcatgttttacaagaaaacacagtaagattaatatatatgaacaatt 163  Q
    |||||||||||||||||||||  | ||||| |||||||| |||| |||||||||||    
T  26885733 tgatatagttcatgttttacagaagaacactgtaagattgatatttatgaacaatt 26885788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 26978936 - 26979115
Alignment:
Q  13 acattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatgata 112  Q
    ||||||||| |||||||||| || ||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| | ||||||  | ||  ||    
T  26978936 acattacattacttgatagaggatatgggtatagaaatcgtccgacaagaatcaattaaagaacctggagaacgcagtaggttgtggtgtcgtaatagta 26979035  T
Q  113 tagttcatgttttacaagaaaacacagtaagattaatatatatgaacaattcgttagtttagcgtaccatgactttgctc 192  Q
    ||||||||||||||||||||||||||||||| || |||| | ||||||||| |||  |||||  ||||||||||||||||    
T  26979036 tagttcatgttttacaagaaaacacagtaagtttgatatctgtgaacaatttgttgttttagtttaccatgactttgctc 26979115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 26960677 - 26960825
Alignment:
Q  9 tgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgat 108  Q
    |||||||||||||||||||||||| || |||||||  ||||| || || || ||||||||||||||||||||| ||||||||||| | ||||||  ||||    
T  26960677 tgtgacattacatgacttgatagaggatatgggtatggaaattgttcgacaggaatcaattaaagagcctggaaaacgcagtaggttgtggtgtcgtgat 26960776  T
Q  109 gatatagttcatgttttacaagaaaacacagtaagattaatatatatga 157  Q
    |||||||||||||||||||||||||| | ||||||||| ||||||||||    
T  26960777 gatatagttcatgttttacaagaaaaaaaagtaagattgatatatatga 26960825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 25075432 - 25075585
Alignment:
Q  10 gtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatg 109  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| | |||| | | ||||    
T  25075432 gtgacattacatgacttgttagaggacatgggtaaagaaatcgtccgacatgaatcaattaaagagcctggagaacgtagtaggttgtggtatcacgatg 25075531  T
Q  110 atatagttcatgttttacaagaaaacacagtaagattaatatatatgaacaatt 163  Q
    ||||| || ||||||||||  | |||| ||||||| |||||| |||||||||||    
T  25075532 atatatttgatgttttacagaacaacaaagtaagaataatatttatgaacaatt 25075585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 26657525 - 26657737
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    ||||| ||||||| || |||||||| ||||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||| | |||||| |  |    
T  26657525 atgtggcattacacgatttgatagaggacatgggtaaagaaatcgtccgacaagaatcaagtaaagagcccggagaacgtagtaggttatggtgtcacaa 26657624  T
Q  108 tgatatagttcatgttttacaagaaaacacagtaagattaatatatatgaacaattcgttagtttagc-gt-accatgacttt-gctctttttgaactta 204  Q
    ||| |||||||||||||||||  || | || |||||||| |||| ||||||||||| |||| |||||| || ||||||| ||| ||||||| || |||||    
T  26657625 tgacatagttcatgttttacagaaagataccgtaagattgatatctatgaacaatttgttattttagctgtaaccatgattttcgctctttatggactta 26657724  T
Q  205 tatatgaacatct 217  Q
    ||||||| |||||    
T  26657725 tatatgatcatct 26657737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 26763496 - 26763708
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    ||||| ||||||| || |||||||| ||||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||| | |||||| |  |    
T  26763496 atgtggcattacacgatttgatagaggacatgggtaaagaaatcgtccgacaagaatcaagtaaagagcccggagaacgtagtaggttatggtgtcacaa 26763595  T
Q  108 tgatatagttcatgttttacaagaaaacacagtaagattaatatatatgaacaattcgttagtttagc-gt-accatgacttt-gctctttttgaactta 204  Q
    ||| |||||||||||||||||  || | || |||||||| |||| ||||||||||| |||| |||||| || ||||||| ||| ||||||| || |||||    
T  26763596 tgacatagttcatgttttacagaaagataccgtaagattgatatctatgaacaatttgttattttagctgtaaccatgattttcgctctttatggactta 26763695  T
Q  205 tatatgaacatct 217  Q
    ||||||| |||||    
T  26763696 tatatgatcatct 26763708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 28787804 - 28787933
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||   |||||||||||||||| | |||||| | |||||| | ||    
T  28787804 atgtgagattacatgacttgatagaagacatgggtaaagaagtcgtccgacaagaatcgcctaaagagcctggagaaagaagtaggttatggtgtcaaga 28787903  T
Q  108 tgatatagttcatgttttacaagaaaacac 137  Q
    |||||||||| |||||||| ||||||||||    
T  28787904 tgatatagttaatgttttaaaagaaaacac 28787933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 28793925 - 28794054
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||   |||||||||||||||| | |||||| | |||||| | ||    
T  28793925 atgtgagattacatgacttgatagaagacatgggtaaagaagtcgtccgacaagaatcgcctaaagagcctggagaaagaagtaggttatggtgtcaaga 28794024  T
Q  108 tgatatagttcatgttttacaagaaaacac 137  Q
    |||||||||| |||||||| ||||||||||    
T  28794025 tgatatagttaatgttttaaaagaaaacac 28794054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 26637193 - 26637311
Alignment:
Q  10 gtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatg 109  Q
    ||||||||||||||||||||||| || ||||||| |||||||||||| |||||||||  |||  |||||||||||||||||||| | |||||| |||| |    
T  26637193 gtgacattacatgacttgatagaggatatgggtatagaaatcgtccgacaagaatcacgtaataagcctggagaacgcagtaggttgtggtgtcatgacg 26637292  T
Q  110 atatagttcatgttttaca 128  Q
    |||||||||||||||||||    
T  26637293 atatagttcatgttttaca 26637311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 26743159 - 26743277
Alignment:
Q  10 gtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatg 109  Q
    ||||||||||||||||||||||| || ||||||| |||||||||||| |||||||||  |||  |||||||||||||||||||| | |||||| |||| |    
T  26743159 gtgacattacatgacttgatagaggatatgggtatagaaatcgtccgacaagaatcacgtaataagcctggagaacgcagtaggttgtggtgtcatgacg 26743258  T
Q  110 atatagttcatgttttaca 128  Q
    |||||||||||||||||||    
T  26743259 atatagttcatgttttaca 26743277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 26624816 - 26624941
Alignment:
Q  11 tgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatga 110  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||||| |||||||||  |||||||||||||||||| |||||  | |||||| | |||||    
T  26624816 tgaccttacatgacttgatagaggacatgggtaaagcaatcgtccgacaagaatcacctaaagagcctggagaacgaagtagattatggtgtcaagatga 26624915  T
Q  111 tatagttcatgttttacaagaaaaca 136  Q
    |||| ||||||||||| |||||||||    
T  26624916 tatatttcatgttttaaaagaaaaca 26624941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 26730793 - 26730918
Alignment:
Q  11 tgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatga 110  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||||| |||||||||  |||||||||||||||||| |||||  | |||||| | |||||    
T  26730793 tgaccttacatgacttgatagaggacatgggtaaagcaatcgtccgacaagaatcacctaaagagcctggagaacgaagtagattatggtgtcaagatga 26730892  T
Q  111 tatagttcatgttttacaagaaaaca 136  Q
    |||| ||||||||||| |||||||||    
T  26730893 tatatttcatgttttaaaagaaaaca 26730918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 27609743 - 27609622
Alignment:
Q  16 ttacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatgatatag 115  Q
    ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |||||| | || ||| | ||||||||||    
T  27609743 ttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatag 27609644  T
Q  116 ttcatgttttacaagaaaacac 137  Q
    ||| |||||||  |||||||||    
T  27609643 ttcgtgttttaagagaaaacac 27609622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 27704894 - 27704765
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    |||||||||||||| |||||||||| || |||||||||||| ||||||| ||||||||||||||||||||||||||| | |||||| | || ||  ||||    
T  27704894 atgtgacattacataacttgatagaggatatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccatga 27704795  T
Q  108 tgatatagttcatgttttacaagaaaacac 137  Q
    |||||||||| |||| ||| ||||||||||    
T  27704794 tgatatagttaatgtcttaaaagaaaacac 27704765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 27717122 - 27717001
Alignment:
Q  16 ttacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatgatatag 115  Q
    ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |||||| | || ||| | ||||||||||    
T  27717122 ttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatag 27717023  T
Q  116 ttcatgttttacaagaaaacac 137  Q
    ||| |||||||  |||||||||    
T  27717022 ttcgtgttttaagagaaaacac 27717001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 31286114 - 31286236
Alignment:
Q  15 attacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatgatata 114  Q
    |||||||||||||||||| ||||||||||||||| ||||||| |||||||||  ||||||||| |||||| | |||||||| |||||| | |||||||||    
T  31286114 attacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcacctaaagagccaggagaaagaagtaggctatggtgtcaagatgatata 31286213  T
Q  115 gttcatgttttacaagaaaacac 137  Q
    ||||||| |||| | ||||||||    
T  31286214 gttcatgctttaaatgaaaacac 31286236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 27680513 - 27680642
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    |||||| |||||||||||||||| | ||||||||||||||| ||||||| |||||||||  |||||||||||||||||| |||||| | ||| || | ||    
T  27680513 atgtgagattacatgacttgataaaggacatgggtaaagaagtcgtccgacaagaatcacctaaagagcctggagaacgaagtaggttatggcgtcaaga 27680612  T
Q  108 tgatatagttcatgttttacaagaaaacac 137  Q
     |||||| ||||||||||| ||||||||||    
T  27680613 agatataattcatgttttaaaagaaaacac 27680642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 26648028 - 26648185
Alignment:
Q  15 attacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatgatata 114  Q
    |||||||||||||||| | ||||||||||| ||| | ||||| |||||||||  |||||||||||||||||  |||||| | |||||| | ||||| |||    
T  26648028 attacatgacttgataaaggacatgggtaaggaagtagtccgacaagaatcacgtaaagagcctggagaacaaagtaggttatggtgtcaagatgaaata 26648127  T
Q  115 gttcatgttttacaagaaaacac----agtaagattaatatatatgaacaattcgtta 168  Q
    |||||||||||| ||||||||||    |||||||||||||| ||||| ||||| ||||    
T  26648128 gttcatgttttaaaagaaaacactgtgagtaagattaatatctatgatcaatttgtta 26648185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 26753996 - 26754153
Alignment:
Q  15 attacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatgatata 114  Q
    |||||||||||||||| | ||||||||||| ||| | ||||| |||||||||  |||||||||||||||||  |||||| | |||||| | ||||| |||    
T  26753996 attacatgacttgataaaggacatgggtaaggaagtagtccgacaagaatcacgtaaagagcctggagaacaaagtaggttatggtgtcaagatgaaata 26754095  T
Q  115 gttcatgttttacaagaaaacac----agtaagattaatatatatgaacaattcgtta 168  Q
    |||||||||||| ||||||||||    |||||||||||||| ||||| ||||| ||||    
T  26754096 gttcatgttttaaaagaaaacactgtgagtaagattaatatctatgatcaatttgtta 26754153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 26863123 - 26863280
Alignment:
Q  9 tgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgat 108  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||| ||||||||   ||||||||| || ||||| |||||| | |||||| |||||    
T  26863123 tgtgagattacatgacttgatagaggacatgggcaaagaaatcgtccgacaagaatctcctaaagagccgggtgaacgaagtaggttatggtgtcatgat 26863222  T
Q  109 gatatagttcatgttttacaagaaaacac----agtaagattaatatatatgaacaat 162  Q
    |||||| | || |||||| ||||||||||    ||||||||| |||| ||||||||||    
T  26863223 gatataatccacgttttagaagaaaacactgtgagtaagattgatatttatgaacaat 26863280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 27529938 - 27529774
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||    | ||||||||||||||||||||| | |||| | |       
T  27529938 atgtgacattacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcacccgatgagcctggagaacgcagtaggttgtggtttgagcg 27529839  T
Q  108 tgatatagttcatgttttacaagaaaacac----agtaagattaatatatatgaacaattcgtta 168  Q
    ||||||||||||||||||| || |||||||    ||||||||| |||| || |||||||| ||||    
T  27529838 tgatatagttcatgttttaaaaaaaaacactgtgagtaagattgatatctaggaacaatttgtta 27529774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 27591644 - 27591517
Alignment:
Q  10 gtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatg 109  Q
    |||||||||||||| |||||||| | ||||||||||||| ||||||| |||||||||  |||||||||||||||| | || ||| | |||| | | ||||    
T  27591644 gtgacattacatgaattgatagaggtcatgggtaaagaagtcgtccgacaagaatcacctaaagagcctggagaaagaagcaggttatggtctcaagatg 27591545  T
Q  110 atatagttcatgttttacaagaaaacac 137  Q
    ||||||||||||||||| ||||||||||    
T  27591544 atatagttcatgttttaaaagaaaacac 27591517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 26813102 - 26813228
Alignment:
Q  10 gtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatg 109  Q
    |||||||||||||||||||||||  ||| |||||||||||| ||||  |||||||||  | |||| || |||||||| |||||||| |||||| | ||||    
T  26813102 gtgacattacatgacttgatagagcacacgggtaaagaaattgtccaacaagaatcacctgaagaaccaggagaacgaagtaggctatggtgtcaagatg 26813201  T
Q  110 atatagttcatgttttacaagaaaaca 136  Q
    ||||||||||||||||| |||||||||    
T  26813202 atatagttcatgttttaaaagaaaaca 26813228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 27697219 - 27697114
Alignment:
Q  9 tgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgat 108  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||||| | |||||| | || ||| | |||    
T  27697219 tgtgacattacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcaactaaagagcctggagaaagaagtaggttatgctgtcaggat 27697120  T
Q  109 gatata 114  Q
    ||||||    
T  27697119 gatata 27697114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 29827541 - 29827666
Alignment:
Q  9 tgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgat 108  Q
    |||||||||||||||||||||||||||||||||||||||||| || || |||||||||   |||||||||||| | || |||||| | ||||  |||||     
T  29827541 tgtgacattacatgacttgatagaagacatgggtaaagaaattgtacgacaagaatcaccgaaagagcctggaaagcgtagtaggttgtggttctatgaa 29827640  T
Q  109 gatatagttcatgttttacaagaaaa 134  Q
    ||||||||||| || ||| |||||||    
T  29827641 gatatagttcaagtcttagaagaaaa 29827666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 2186369 - 2186488
Alignment:
Q  9 tgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgat 108  Q
    |||||||||||||||||||||||| || ||||||||||||||||| || |||||||||   |||||||||||| |||| |||||| | ||||   ||||     
T  2186369 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaa 2186468  T
Q  109 gatatagttcatgttttaca 128  Q
    |||||||||| |||||||||    
T  2186469 gatatagttcctgttttaca 2186488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 27603324 - 27603197
Alignment:
Q  10 gtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatg 109  Q
    |||||| | ||| |||||||||| ||||||||||||||| ||||||| |||||||||  |||||||||||||||| | |||||| | |||||| | || |    
T  27603324 gtgacactgcataacttgatagaggacatgggtaaagaagtcgtccgacaagaatcacctaaagagcctggagaaagaagtaggttatggtgtcaagacg 27603225  T
Q  110 atatagttcatgttttacaagaaaacac 137  Q
    |||||||||||||| ||  |||||||||    
T  27603224 atatagttcatgttctaacagaaaacac 27603197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 27676243 - 27676116
Alignment:
Q  10 gtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatg 109  Q
    |||||||||||||| |||||||| | ||||||||||||| | ||||| |||||||||  |||||||||||||||| | || ||| | |||| | | ||||    
T  27676243 gtgacattacatgaattgatagaggtcatgggtaaagaagtggtccgacaagaatcacctaaagagcctggagaaagaagcaggttatggtctcaagatg 27676144  T
Q  110 atatagttcatgttttacaagaaaacac 137  Q
    |||||||||||||||||  |||||||||    
T  27676143 atatagttcatgttttaacagaaaacac 27676116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 26144416 - 26144551
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||    ||  |||||||||||||||||||| | |||| |   ||    
T  26144416 atgtgaccttacatgacttgatagaggacatgggtaaagaaatcgtccgacaagaatctcccaacaagcctggagaacgcagtaggttgtggtttcccga 26144515  T
Q  108 tgatatagttcatgttttacaagaaaacacagtaag 143  Q
    |||||||||| | ||||||  ||| || ||||||||    
T  26144516 tgatatagttaacgttttaagagataatacagtaag 26144551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 26804018 - 26804137
Alignment:
Q  17 tacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatgatatagt 116  Q
    |||||||||||||| | ||||||||||||||| ||||||| |||||||||  |||||| |||| | |||| |||||| | ||| || |||| ||||||||    
T  26804018 tacatgacttgataaaggacatgggtaaagaagtcgtccgacaagaatcacctaaagatcctgaaaaacgaagtaggttatggcgtcatgaagatatagt 26804117  T
Q  117 tcatgttttacaagaaaaca 136  Q
    ||||||| || |||||||||    
T  26804118 tcatgttataaaagaaaaca 26804137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 26825376 - 26825535
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    ||||||||||||||||||||||| | |||||||| |||||| | ||||| ||| |||||  ||||||||| || |||||||| ||||| |||||| |  |    
T  26825376 atgtgacattacatgacttgataaaggacatgggcaaagaagtagtccgacaacaatcatctaaagagcccggtgaacgcagcaggctgtggtgtcacaa 26825475  T
Q  108 tgatatagttcatgttttacaagaaaacac----agtaagattaatatatatgaacaatt 163  Q
    ||||||  |||||||||| || | ||||||    ||||||||| |||| |||||||||||    
T  26825476 tgatattattcatgttttgcagggaaacacagtgagtaagattgatatttatgaacaatt 26825535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 25491933 - 25491780
Alignment:
Q  13 acattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatgata 112  Q
    ||||||||| ||||||||||  |||||||||||||| |||| || |||||||||  ||| || ||||||||||| |||||| | ||||||   |||||||    
T  25491933 acattacataacttgatagagcacatgggtaaagaagtcgttcgacaagaatcacgtaatgatcctggagaacgtagtaggttgtggtgtcccgatgata 25491834  T
Q  113 tagttcatgttttacaagaaaacac----agtaagattaatatatatgaacaat 162  Q
    | ||||| ||||||  |||||||||    ||||||||| |||| ||||||||||    
T  25491833 tggttcaagttttaagagaaaacacggtaagtaagattgatatctatgaacaat 25491780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 26938581 - 26938729
Alignment:
Q  15 attacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatgatata 114  Q
    ||||||||||||||| || ||||||||||||||||| ||  | ||||||||| | |||||| |||||||||||| |||  | |||| | |  | ||||||    
T  26938581 attacatgacttgattgaggacatgggtaaagaaattgttagacaagaatcagtcaaagaggctggagaacgcactagattgtggtttgacaaagatata 26938680  T
Q  115 gttcatgttttacaagaaaacacagtaagattaatatatatgaacaatt 163  Q
    |||||||| ||| ||||||| || |||||||| |||  |||||||||||    
T  26938681 gttcatgtattaaaagaaaatacggtaagattgataagtatgaacaatt 26938729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 26057469 - 26057588
Alignment:
Q  7 catgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatg 106  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||||||    ||  |||||||||||||||||||| | |||| |   |    
T  26057469 catgtgaccttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatctcccaataagcctggagaacgcagtaggttgtggtttcgcg 26057568  T
Q  107 atgatatagttcatgtttta 126  Q
    ||||||||||| | ||||||    
T  26057569 atgatatagttaacgtttta 26057588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 26077439 - 26077558
Alignment:
Q  7 catgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatg 106  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||||||    ||  |||||||||||||||||||| | |||| |   |    
T  26077439 catgtgaccttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatctcccaagaagcctggagaacgcagtaggttgtggtttcgcg 26077538  T
Q  107 atgatatagttcatgtttta 126  Q
    ||||||||||| | ||||||    
T  26077539 atgatatagttaacgtttta 26077558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 411
Target Start/End: Original strand, 26960860 - 26961024
Alignment:
Q  246 tgtacatgttctagctctataagttatttgtattgtggttgattaattttaa--nnnnnnnnngttaaaagggaagtagtaaaattgaaataatatatct 343  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |           |||||||||||| ||||||||||||||| |||||| |    
T  26960860 tgtacatgttctagctctatatgttatttgtattgtggttgattaatttttattttattttttgttaaaagggaactagtaaaattgaaatgatatattt 26960959  T
Q  344 catttatccacgaaggaaccttgtaatagacgtgaatgaaaaggccttcaagaagatgacaaatctca 411  Q
     | || |||   || ||| |  |   ||||| ||||||||||||| ||||||||||||||||||||||    
T  26960960 gaattctccctcaatgaaacccg---tagacatgaatgaaaaggcattcaagaagatgacaaatctca 26961024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 25546531 - 25546649
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    ||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||||||    ||  |||||||||||||||||||| | |||| |   ||    
T  25546531 atgtgaccttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatctcccaacaagcctggagaacgcagtaggttgtggtttcgcga 25546630  T
Q  108 tgatatagttcatgtttta 126  Q
    |||||||||| | ||||||    
T  25546631 tgatatagttaacgtttta 25546649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 25512439 - 25512524
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtagg 93  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||||||    ||  ||||||||||||||||||||    
T  25512439 atgtgaccttacatgacttgatagaggacatgggtaaagaaaccgtccgacaagaatctcccaacaagcctggagaacgcagtagg 25512524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 25581273 - 25581405
Alignment:
Q  11 tgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatga 110  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||    ||  | |||||||||||||||||| | |||| | | |||||    
T  25581273 tgaccttacatgacttgatagaggacatgggtaaagaaatcgtccgacaagaatctcccaagaaccctggagaacgcagtaggttgtggtttcacgatga 25581372  T
Q  111 tatagttcatgttttacaagaaaacacagtaag 143  Q
    |||| || | ||||||  ||| || ||||||||    
T  25581373 tatatttgacgttttaagagataatacagtaag 25581405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 28150726 - 28150798
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctgg 80  Q
    |||| |||||||||||||||||||||||||||||||||||||| || || |||||||||   |||||||||||    
T  28150726 atgtaacattacatgacttgatagaagacatgggtaaagaaattgtacgacaagaatcaccaaaagagcctgg 28150798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 29842619 - 29842547
Alignment:
Q  9 tgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctgga 81  Q
    ||||||| |||||||||||||||||||||||||||||||||| || || | ||||||||  ||||||||||||    
T  29842619 tgtgacactacatgacttgatagaagacatgggtaaagaaattgtacgaccagaatcaacgaaagagcctgga 29842547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 28097079 - 28096944
Alignment:
Q  9 tgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgat 108  Q
    |||||||||||||||||||||||||||||||||||||||||| ||  | |||||||||   ||||| |||||| |||| || ||| | | ||   ||||     
T  28097079 tgtgacattacatgacttgatagaagacatgggtaaagaaattgtaagacaagaatcaccaaaagaacctggaaaacgtagcaggttgtcgttccatgaa 28096980  T
Q  109 gatatagttcatgttttacaagaaaacacagtaaga 144  Q
    |||||| |||| |||||| |||||||  ||||||||    
T  28096979 gatatatttcaagttttagaagaaaattcagtaaga 28096944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 25484607 - 25484713
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    ||||||| ||||||||||||||||| ||||||||||||||| |||| || ||||||||    ||  |||||||||||||||||||| | |||| | | ||    
T  25484607 atgtgaccttacatgacttgatagaggacatgggtaaagaagtcgttcgacaagaatctcccaagaagcctggagaacgcagtaggttgtggtttcacga 25484706  T
Q  108 tgatata 114  Q
    |||||||    
T  25484707 tgatata 25484713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 26850564 - 26850610
Alignment:
Q  365 tgtaatagacgtgaatgaaaaggccttcaagaagatgacaaatctca 411  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  26850564 tgtaatagacatgaatgaaaaggccttcaagaagatgacaaatctca 26850610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 28141089 - 28141161
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctgg 80  Q
    ||||||||||||||||||||||||| || |||||||||||||| || || |||||||||   |||||||||||    
T  28141089 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 28141161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 26979180 - 26979269
Alignment:
Q  256 ctagctctataagttatttgtattgtggttgattaattttaannnnnnnnn--gttaaaagggaagtagtaaaattgaaataatatatct 343  Q
    ||||||||||| |||||||||||||||||||||||||||| |           |||||||||||| ||||||||||||||| ||||||||    
T  26979180 ctagctctatatgttatttgtattgtggttgattaatttttattttattttttgttaaaagggaactagtaaaattgaaatgatatatct 26979269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 411
Target Start/End: Original strand, 26979299 - 26979341
Alignment:
Q  369 atagacgtgaatgaaaaggccttcaagaagatgacaaatctca 411  Q
    |||||| ||||||||||||| ||||||||||||||||||||||    
T  26979299 atagacatgaatgaaaaggcattcaagaagatgacaaatctca 26979341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 29469759 - 29469883
Alignment:
Q  10 gtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatg 109  Q
    |||||||||||||| |||||||| || ||||| |||||||| ||  | |||||||||  | |||| |||||| ||||||||||| | ||||  | | | |    
T  29469759 gtgacattacatgatttgatagaggatatggggaaagaaattgttagacaagaatcacctgaagatcctggaaaacgcagtaggttatggtcctctaaag 29469858  T
Q  110 atatagttcatgttttacaagaaaa 134  Q
    ||||| |||| |||||| |||||||    
T  29469859 atataattcaagttttagaagaaaa 29469883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 27426247 - 27426188
Alignment:
Q  7 catgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatca 66  Q
    |||||| |||||||| ||||||||||  |||||||||||||| ||||||| | |||||||    
T  27426247 catgtgtcattacataacttgatagagaacatgggtaaagaactcgtccgactagaatca 27426188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 26850457 - 26850491
Alignment:
Q  258 agctctataagttatttgtattgtggttgattaat 292  Q
    ||||||| |||||||||||||||||||||||||||    
T  26850457 agctctaaaagttatttgtattgtggttgattaat 26850491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 26813342 - 26813378
Alignment:
Q  307 gttaaaagggaagtagtaaaattgaaataatatatct 343  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  26813342 gttaaaagggaactagtaaaattgaaatgatatatct 26813378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 27663532 - 27663496
Alignment:
Q  307 gttaaaagggaagtagtaaaattgaaataatatatct 343  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  27663532 gttaaaagggaactagtaaaattgaaatgatatatct 27663496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 29673646 - 29673514
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    |||||||||||||||| ||| |||| || ||||| |||||||| ||  | |||||| ||  | |||| |||||| |||| |||||| | |||| ||  ||    
T  29673646 atgtgacattacatgatttggtagaggatatgggaaaagaaattgttagacaagaagcacctgaagatcctggaaaacgtagtaggttatggttttccga 29673547  T
Q  108 tgatatagttcatgttttacaagaaaacacagt 140  Q
     |||||| |||| |||||| ||||||| |||||    
T  29673546 agatataattcaagttttagaagaaaatacagt 29673514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 28126315 - 28126094
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||||| ||||||||  ||||||||||||||||||||  ||| | |||||| |  |    
T  28126315 atgtgacattacatgacttgatagaggatacgggtaaagaaatcgtccggaaagaatcacgtaaagagcctggagaacgcaacaggttatggtgtcacaa 28126216  T
Q  108 tgatatagttcatgttttacaagaaaacacagtaagattaatatatatgaacaattcgttagtttagcgt--accatgactttgctctttttgaacttat 205  Q
    |||||||||||||||| ||||  ||||||| |||||||| |||| ||||||||||| |||| |||||| |  | ||||||||  ||||||||| ||||||    
T  28126215 tgatatagttcatgttctacagaaaaacacggtaagattgatatctatgaacaatttgttattttagctttaatcatgacttcactctttttggacttat 28126116  T
Q  206 atatgaacatctcgttctagtt 227  Q
    |||||| |||||| | ||||||    
T  28126115 atatgaccatctcatgctagtt 28126094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 28132126 - 28131901
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||   |||||||   ||| || |||||||||||||||||| | |||||| |  |    
T  28132126 atgtgacattacatgacttgatagaagacacaggtaaagaaatcgtccataaagaatcgtgtaaggaacctggagaacgcagtaggttatggtgtcacaa 28132027  T
Q  108 tgatatagttcatgttttacaagaaaacacagtaagattaatatatatgaacaattcgttagtttagcgt--accatgactttgctctttttgaacttat 205  Q
    |||||||||||||| | ||||  ||||||| |||||||| |||| ||||||||||| |||| ||| || |  || ||||||| |||||||||| ||||||    
T  28132026 tgatatagttcatg-tctacagaaaaacacggtaagattgatatctatgaacaatttgttatttttgctttaacaatgacttggctctttttggacttat 28131928  T
Q  206 atatgaacatctcgttctagttctttt 232  Q
    |||||| ||||||||||||||| ||||    
T  28131927 atatgaccatctcgttctagttttttt 28131901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 266981 - 266862
Alignment:
Q  7 catgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatg 106  Q
    |||||||||||||||||| ||||||| ||||||||||||||| | ||||| |||||||||  |||||||||||||||||| |||||| | |||||| | |    
T  266981 catgtgacattacatgacatgatagaggacatgggtaaagaagtggtccgccaagaatcacctaaagagcctggagaacgaagtaggttatggtgtcaag 266882  T
Q  107 atgatatagttcatgtttta 126  Q
    ||||||||||||||||||||    
T  266881 atgatatagttcatgtttta 266862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 26137434 - 26137565
Alignment:
Q  9 tgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgat 108  Q
    |||| ||||||||||||||||||| || |||||||||||||| ||||| |||||||||   ||||| |||||| ||||||||||| | |||| | ||||     
T  26137434 tgtggcattacatgacttgatagaggatatgggtaaagaaattgtccgacaagaatcacccaaagaacctggaaaacgcagtaggttgtggtttcatgaa 26137533  T
Q  109 gatatagttcatgttttacaagaaaacacagt 140  Q
    |||||||||||||||||| ||||||| |||||    
T  26137534 gatatagttcatgttttaaaagaaaatacagt 26137565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 5922101 - 5921980
Alignment:
Q  13 acattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatgata 112  Q
    |||||||||||  ||||||| |||||||| |||||||| ||  | |||||||||   |||||||||||| | ||||||||| | |||||   ||| ||||    
T  5922101 acattacatgatgtgatagaggacatgggaaaagaaattgttagacaagaatcaccgaaagagcctggaaagcgcagtaggttatggtgccctgaagata 5922002  T
Q  113 tagttcatgttttacaagaaaa 134  Q
    ||||||| |||||| |||||||    
T  5922001 tagttcaagttttagaagaaaa 5921980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 411
Target Start/End: Complemental strand, 266689 - 266585
Alignment:
Q  307 gttaaaagggaagtagtaaaattgaaataatatatctcatttatccac--gaaggaaccttgtaatagacgtgaatgaaaaggccttcaagaagatgaca 404  Q
    |||||||||||| ||||||| ||||||| |||||| | | || |||||  || ||||||| |||||||||  ||| | ||||||||||||||||||||||    
T  266689 gttaaaagggaactagtaaagttgaaatgatatatatgaatt-tccactcgatggaacct-gtaatagaccagaaaggaaaggccttcaagaagatgaca 266592  T
Q  405 aatctca 411  Q
    |||||||    
T  266591 aatctca 266585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 17991831 - 17991688
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    |||| ||| |||||||||||||||| |||||||||||||||||||| ||||||||||||  |||||||||||||||||| |||||  | ||||||||| |    
T  17991831 atgttacagtacatgacttgatagaggacatgggtaaagaaatcgttcggcaagaatcacctaaagagcctggagaacggagtagattgtggtgttataa 17991732  T
Q  108 tgatatagttcatgttttacaagaaaacacagtaagattaatat 151  Q
    ||| ||||||||||||||||| ||||| ||||||||||| ||||    
T  17991731 tgacatagttcatgttttacaggaaaatacagtaagattcatat 17991688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 3281218 - 3281249
Alignment:
Q  19 catgacttgatagaagacatgggtaaagaaat 50  Q
    ||||||||||||||||||||||||||||||||    
T  3281218 catgacttgatagaagacatgggtaaagaaat 3281249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 2162 - 2041
Alignment:
Q  16 ttacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatgatatag 115  Q
    ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |||||| | || ||| | ||||||||||    
T  2162 ttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatag 2063  T
Q  116 ttcatgttttacaagaaaacac 137  Q
    ||| |||||||  |||||||||    
T  2062 ttcgtgttttaagagaaaacac 2041  T

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Target: scaffold1870 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 331 - 461
Alignment:
Q  7 catgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatg 106  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||| || ||||||||   ||||||||| |||||| | |||||| | |||||| | |    
T  331 catgtgacattacatgactttatagaggacatgggtaaagaagtcgtacgacaagaatcgcctaaagagccaggagaaagaagtaggttatggtgtcaag 430  T
Q  107 atgatatagttcatgttttacaagaaaacac 137  Q
    ||||||||||| |||||||| ||||||||||    
T  431 atgatatagttaatgttttaaaagaaaacac 461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 9049 - 9179
Alignment:
Q  7 catgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatg 106  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||| || ||||||||   ||||||||| |||||| | |||||| | |||||| | |    
T  9049 catgtgacattacatgactttatagaggacatgggtaaagaagtcgtacgacaagaatcgcctaaagagccaggagaaagaagtaggttatggtgtcaag 9148  T
Q  107 atgatatagttcatgttttacaagaaaacac 137  Q
    ||||||||||| |||||||| ||||||||||    
T  9149 atgatatagttaatgttttaaaagaaaacac 9179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 18654111 - 18653960
Alignment:
Q  10 gtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatg 109  Q
    |||||||||||||||||| |||| | |||||||||||||||||||||| ||||||||  |||| |||||| | | || |||||| | ||||||    |||    
T  18654111 gtgacattacatgacttgctagaggtcatgggtaaagaaatcgtccggaaagaatcacctaaacagcctgaaaagcgtagtaggttgtggtgtcgcaatg 18654012  T
Q  110 atatagttcatgttttacaagaaaacacagtaagattaatatatatgaacaa 161  Q
    | ||||||||| ||||||| ||||||| ||||||||| |||| |||||||||    
T  18654011 acatagttcatattttacaggaaaacaaagtaagattgatatctatgaacaa 18653960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 18678191 - 18678040
Alignment:
Q  10 gtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatg 109  Q
    |||||||||||||||||| |||| | |||||||||||||||||||||| ||||||||   |||||||||| | | || |||||| | ||||||    |||    
T  18678191 gtgacattacatgacttgctagaggtcatgggtaaagaaatcgtccggaaagaatcacccaaagagcctgaaaagcgtagtaggttgtggtgtcgcaatg 18678092  T
Q  110 atatagttcatgttttacaagaaaacacagtaagattaatatatatgaacaa 161  Q
    | ||||||||| ||||||| ||||||| ||||||||| |||| |||||||||    
T  18678091 acatagttcatattttacaggaaaacaaagtaagattgatatctatgaacaa 18678040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 18730131 - 18729978
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    |||||||||||||||||||| |||| | |||||||||||||||||||||| ||||||||   |||||||||| | | || ||| || | ||||||   ||    
T  18730131 atgtgacattacatgacttgctagaggtcatgggtaaagaaatcgtccggaaagaatcacccaaagagcctgaaaagcgtagtcggttgtggtgtcgcga 18730032  T
Q  108 tgatatagttcatgttttacaagaaaacacagtaagattaatatatatgaacaa 161  Q
    ||| ||| ||||| ||||||| ||||||| ||||||||| |||| |||||||||    
T  18730031 tgacataattcatattttacaggaaaacaaagtaagattgatatctatgaacaa 18729978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 18722704 - 18722553
Alignment:
Q  10 gtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatg 109  Q
    |||||||||||||||||| |||| | |||||||||||||||| | ||  ||||||||  ||||||||||| | |||| ||| || | ||||||  |||||    
T  18722704 gtgacattacatgacttgctagaggtcatgggtaaagaaatcattcgtaaagaatcacctaaagagcctgaaaaacgtagtcggttgtggtgtcgtgatg 18722605  T
Q  110 atatagttcatgttttacaagaaaacacagtaagattaatatatatgaacaa 161  Q
    | ||||||||| ||||||  ||||||| ||||||||| |||| |||||||||    
T  18722604 acatagttcatattttactggaaaacaaagtaagattgatatctatgaacaa 18722553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 18688248 - 18688097
Alignment:
Q  10 gtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatg 109  Q
    |||||||||||||||||| |||| | ||||||||||||||| |||||| ||||||||  ||||||||||| | | || ||| || | ||||||  || ||    
T  18688248 gtgacattacatgacttgctagaggtcatgggtaaagaaattgtccggaaagaatcacctaaagagcctgaaaagcgtagtcggttgtggtgtcgtggtg 18688149  T
Q  110 atatagttcatgttttacaagaaaacacagtaagattaatatatatgaacaa 161  Q
    | ||| ||||  ||||||| ||||||| ||||||||| |||| |||||||||    
T  18688148 acataattcaaattttacaggaaaacaaagtaagattgatatctatgaacaa 18688097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 18698034 - 18697883
Alignment:
Q  10 gtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatg 109  Q
    |||||||||||||||||| |||| | |||||||||||||||||||||| ||||||||   |||||||||| | | || ||| |  | ||||||   ||||    
T  18698034 gtgacattacatgacttgctagaggccatgggtaaagaaatcgtccggaaagaatcacccaaagagcctgaaaagcgtagtcgattgtggtgtcgcgatg 18697935  T
Q  110 atatagttcatgttttacaagaaaacacagtaagattaatatatatgaacaa 161  Q
    | ||| ||||| ||||||| ||||||| ||||||||| |||| |||||||||    
T  18697934 acataattcatattttacaggaaaacaaagtaagattgatatctatgaacaa 18697883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 411
Target Start/End: Complemental strand, 18653875 - 18653771
Alignment:
Q  307 gttaaaagggaagtagtaaaattgaaataatatatctcatttatccacgaaggaaccttgtaatagacgtgaatgaaaaggccttcaagaagatgacaaa 406  Q
    ||||||||||||  ||||||||||| || |||||||| | || |||   || | | || |||||||||  ||||| ||||||||||||||||||||||||    
T  18653875 gttaaaagggaacaagtaaaattgagatgatatatctgaattctccctcaatggatctggtaatagactggaatggaaaggccttcaagaagatgacaaa 18653776  T
Q  407 tctca 411  Q
    |||||    
T  18653775 tctca 18653771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 18697740 - 18697695
Alignment:
Q  366 gtaatagacgtgaatgaaaaggccttcaagaagatgacaaatctca 411  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||    
T  18697740 gtaatagactggaatggaaaggccttcaagaagatgacaaatctca 18697695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 18722412 - 18722367
Alignment:
Q  366 gtaatagacgtgaatgaaaaggccttcaagaagatgacaaatctca 411  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||    
T  18722412 gtaatagactggaatggaaaggccttcaagaagatgacaaatctca 18722367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 411
Target Start/End: Complemental strand, 18677957 - 18677853
Alignment:
Q  307 gttaaaagggaagtagtaaaattgaaataatatatctcatttatccacgaaggaaccttgtaatagacgtgaatgaaaaggccttcaagaagatgacaaa 406  Q
    ||||||||||||  ||||||||||| || |||||||| | || |||   || | | || |||||||||  ||||| |||| |||||||||||||||||||    
T  18677957 gttaaaagggaacaagtaaaattgagatgatatatctgaattctccctcaatggatctggtaatagactggaatggaaagaccttcaagaagatgacaaa 18677858  T
Q  407 tctca 411  Q
    |||||    
T  18677857 tctca 18677853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 411
Target Start/End: Complemental strand, 18688011 - 18687907
Alignment:
Q  307 gttaaaagggaagtagtaaaattgaaataatatatctcatttatccacgaaggaaccttgtaatagacgtgaatgaaaaggccttcaagaagatgacaaa 406  Q
    ||||||||||||  ||||||||||| || |||||||| | || |||   || | | || |||||||||  ||||| |||||| |||||||||||||||||    
T  18688011 gttaaaagggaacaagtaaaattgagatgatatatctgaattctccctcaatggatctggtaatagactggaatggaaaggctttcaagaagatgacaaa 18687912  T
Q  407 tctca 411  Q
    |||||    
T  18687911 tctca 18687907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 411
Target Start/End: Complemental strand, 18729893 - 18729789
Alignment:
Q  307 gttaaaagggaagtagtaaaattgaaataatatatctcatttatccacgaaggaaccttgtaatagacgtgaatgaaaaggccttcaagaagatgacaaa 406  Q
    ||||||||||||  ||||||||||| || |||||||| | || |||   || | | || |||||||||  ||||| |||||| |||||||||||||||||    
T  18729893 gttaaaagggaacaagtaaaattgagatgatatatctgaattctccctcaatggatctggtaatagactggaatggaaaggctttcaagaagatgacaaa 18729794  T
Q  407 tctca 411  Q
    |||||    
T  18729793 tctca 18729789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 18075308 - 18075367
Alignment:
Q  7 catgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatca 66  Q
    |||||| |||||||| ||||||||||  |||||||||||||| ||||||| | |||||||    
T  18075308 catgtgtcattacataacttgatagagaacatgggtaaagaactcgtccgactagaatca 18075367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 5089589 - 5089548
Alignment:
Q  9 tgtgacattacatgacttgatagaagacatgggtaaagaaat 50  Q
    |||||||||||||||| ||||||||  |||||||||||||||    
T  5089589 tgtgacattacatgacctgatagaaatcatgggtaaagaaat 5089548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 3331 - 3205
Alignment:
Q  11 tgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatga 110  Q
    ||||| |||||||||||||| | ||||||||||||||| ||||||| ||||||||    ||||||||||||||| | |||||  | |||||| | |||||    
T  3331 tgacactacatgacttgataaaggacatgggtaaagaagtcgtccgacaagaatcgcccaaagagcctggagaaagaagtagattatggtgtgaagatga 3232  T
Q  111 tatagttcatgttttacaagaaaacac 137  Q
    ||||||| |||||||| ||||||||||    
T  3231 tatagttaatgttttaaaagaaaacac 3205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 12294 - 12168
Alignment:
Q  11 tgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatga 110  Q
    ||||| |||||||||||||| | ||||||||||||||| ||||||| ||||||||    ||||||||||||||| | |||||  | |||||| | |||||    
T  12294 tgacactacatgacttgataaaggacatgggtaaagaagtcgtccgacaagaatcgcccaaagagcctggagaaagaagtagattatggtgtgaagatga 12195  T
Q  111 tatagttcatgttttacaagaaaacac 137  Q
    ||||||| |||||||| ||||||||||    
T  12194 tatagttaatgttttaaaagaaaacac 12168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 29272458 - 29272340
Alignment:
Q  19 catgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatgatgatatagttc 118  Q
    ||||| |||||||  ||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |||||| | || ||  | |||||| ||||||    
T  29272458 catgatttgataggggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatctagttc 29272359  T
Q  119 atgttttacaagaaaacac 137  Q
     |||||||  |||||||||    
T  29272358 gtgttttaagagaaaacac 29272340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 16371764 - 16371707
Alignment:
Q  9 tgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatca 66  Q
    ||||||||||||| || || |||||||||||||||||||||| ||||| |||||||||    
T  16371764 tgtgacattacataacctggtagaagacatgggtaaagaaattgtccgacaagaatca 16371707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 16692412 - 16692538
Alignment:
Q  8 atgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatcaattaaagagcctggagaacgcagtaggctttggtgttatga 107  Q
    |||||||||| ||| ||||||| || ||||||||||||||||| |||||  |||||||    ||| | |||||  ||||||||||| | |||| | | ||    
T  16692412 atgtgacattgcatcacttgattgaggacatgggtaaagaaattgtccgaaaagaatccccaaaacatcctggtaaacgcagtaggttgtggtttcacga 16692511  T
Q  108 tgatatagttcatgttttacaagaaaa 134  Q
     ||||||||||| |||||| |||||||    
T  16692512 agatatagttcaagttttagaagaaaa 16692538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 61116 - 61175
Alignment:
Q  7 catgtgacattacatgacttgatagaagacatgggtaaagaaatcgtccggcaagaatca 66  Q
    |||||| |||||||| ||||||||||  |||||||||||||| ||||||| | |||||||    
T  61116 catgtgtcattacataacttgatagagaacatgggtaaagaactcgtccgactagaatca 61175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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