View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10162_low_9 (Length: 396)

Name: NF10162_low_9
Description: NF10162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10162_low_9
NF10162_low_9
[»] chr5 (7 HSPs)
chr5 (19-383)||(34840039-34840403)
chr5 (224-271)||(21157810-21157857)
chr5 (224-271)||(21150669-21150716)
chr5 (224-271)||(11413525-11413572)
chr5 (224-271)||(18392966-18393013)
chr5 (224-268)||(4609204-4609249)
chr5 (224-271)||(18676409-18676457)
[»] chr2 (6 HSPs)
chr2 (219-271)||(45065267-45065319)
chr2 (204-271)||(37077365-37077432)
chr2 (224-271)||(38148037-38148084)
chr2 (219-271)||(37660932-37660984)
chr2 (224-271)||(28967232-28967279)
chr2 (224-265)||(30545484-30545526)
[»] chr4 (10 HSPs)
chr4 (224-271)||(1180900-1180947)
chr4 (224-271)||(1615054-1615101)
chr4 (224-269)||(37551665-37551710)
chr4 (224-271)||(9746426-9746473)
chr4 (219-271)||(3802358-3802410)
chr4 (224-263)||(1146045-1146084)
chr4 (224-271)||(41813843-41813890)
chr4 (224-266)||(20294581-20294623)
chr4 (219-271)||(53855564-53855616)
chr4 (224-257)||(43086615-43086648)
[»] chr3 (4 HSPs)
chr3 (224-271)||(2642897-2642944)
chr3 (224-270)||(53055685-53055731)
chr3 (224-268)||(23771485-23771529)
chr3 (224-261)||(29748734-29748771)
[»] chr7 (7 HSPs)
chr7 (209-269)||(48981365-48981425)
chr7 (224-271)||(8965901-8965948)
chr7 (224-271)||(35684341-35684388)
chr7 (224-271)||(46563124-46563171)
chr7 (224-269)||(3178127-3178172)
chr7 (224-271)||(26803430-26803478)
chr7 (224-266)||(38168789-38168831)
[»] scaffold0006 (1 HSPs)
scaffold0006 (224-271)||(96060-96107)
[»] scaffold0003 (1 HSPs)
scaffold0003 (224-271)||(252789-252836)
[»] chr8 (5 HSPs)
chr8 (224-271)||(8954697-8954744)
chr8 (224-271)||(11163461-11163508)
chr8 (224-263)||(9301541-9301580)
chr8 (220-271)||(38074471-38074521)
chr8 (208-271)||(11727777-11727840)
[»] chr6 (1 HSPs)
chr6 (224-271)||(19812151-19812198)
[»] scaffold0036 (1 HSPs)
scaffold0036 (224-271)||(23331-23379)
[»] chr1 (2 HSPs)
chr1 (219-271)||(11248976-11249028)
chr1 (224-271)||(50152628-50152675)
[»] scaffold0236 (1 HSPs)
scaffold0236 (224-271)||(14249-14296)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 34840039 - 34840403
Alignment:
Q  19 acaattaagcaaggaagagtgtagttcatatatgtttggtttgtgctacttaattggttttgagattggacctttgtcctatttaaatgttgtgcccacc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34840039 acaattaagcaaggaagagtgtagttcatatatgtttggtttgtgctacttaattggttttgagattggacttttgtcctatttaaatgttgtgcccacc 34840138  T
Q  119 ataatctatttctactactgatacactaatcacattttaaggaatcaattacttagtcaccgaaaaaagtgattccaattcttattttagtacttcctat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| || || |    
T  34840139 ataatctatttctactactgatacactaatcacattttaaggaatcaattacttagtcatcgaaaaaagcgattccgattcttattttagtattttctct 34840238  T
Q  219 attcttttttaattgtcacttttaagttttttacacaaaccaagacaacaaattttcttgatttcttctgttcatcaaatttgccaattgtctttttatt 318  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34840239 gttcttttttaattgtcacttttaagttttttacacaaatcaagacaacaaattttcttgatttcttctgttcatcaaatttgccaattgtctttttatt 34840338  T
Q  319 catagatagagcacatcacctccaataccagatatagcgaagaaagaagttgattaccacaggtt 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34840339 catagatagagcacatcacctccaataccagatatagcgaagaaagaagttgattaccacgggtt 34840403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 21157857 - 21157810
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  21157857 tttttaattgtcacttttgagttttttacacaaaccaagacaacaaat 21157810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 21150716 - 21150669
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||    
T  21150716 tttttaactgtcacttttgagttttttacacaaaccaagacaacaaat 21150669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 11413525 - 11413572
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    ||||||||| ||| |||| |||||||||||||||||||||||||||||    
T  11413525 tttttaattatcatttttgagttttttacacaaaccaagacaacaaat 11413572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 18392966 - 18393013
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||    
T  18392966 tttttaattgtcacttttgagatttttacataaaccaagacaacaaat 18393013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 4609249 - 4609204
Alignment:
Q  224 tttttaattgtcacttttaagtttttt-acacaaaccaagacaaca 268  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||    
T  4609249 tttttaattgtcacttttgagtttttttacacaaaccaagacaaca 4609204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 18676409 - 18676457
Alignment:
Q  224 tttttaattgtcactttt-aagttttttacacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| || ||||||||||||| |||||||||||||    
T  18676409 tttttaattgtcacttttgaatttttttacacaaatcaagacaacaaat 18676457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 45065319 - 45065267
Alignment:
Q  219 attcttttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  45065319 attcttttttaattgtcacttttgaattttttacacaaaccaagacaacaaat 45065267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 37077432 - 37077365
Alignment:
Q  204 tttagtacttcctatattcttttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    ||||||||| |||  |||| |||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  37077432 tttagtactccctccattcctttttaattgtcacttttgagtcttttacacaaaccaagataacaaat 37077365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 38148037 - 38148084
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||    
T  38148037 tttttaattgtcacttttgagttttttacacaagccaagacaacaaat 38148084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 37660984 - 37660932
Alignment:
Q  219 attcttttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||| ||||||||| | | ||||||||||||||||||||||||||||||||||    
T  37660984 attcctttttaatttttatttttaagttttttacacaaaccaagacaacaaat 37660932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 28967232 - 28967279
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  28967232 tttttaattgtcatttttgagttttttacacaaaccaaaacaacaaat 28967279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 30545526 - 30545484
Alignment:
Q  224 tttttaattgtcacttttaag-ttttttacacaaaccaagaca 265  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  30545526 tttttaattgtcacttttgagtttttttacacaaaccaagaca 30545484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 1180900 - 1180947
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1180900 tttttaattgtcacttttaggttttttacacaaaccaagacaacaaat 1180947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 1615054 - 1615101
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  1615054 tttttaattgtcacttttgagttttttacacaaaccaagacaacaaat 1615101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 37551665 - 37551710
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaa 269  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  37551665 tttttaattgtcacttttgagttttttacacaaaccaagacaacaa 37551710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 9746473 - 9746426
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  9746473 tttttaattgtcacttttgaattttttacacaaaccaagacaacaaat 9746426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 3802410 - 3802358
Alignment:
Q  219 attcttttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||| |||||||||||||||||| |||||  ||||||||||||||||||||||    
T  3802410 attcctttttaattgtcacttttgagtttcgtacacaaaccaagacaacaaat 3802358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 1146045 - 1146084
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaaga 263  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  1146045 tttttaattgtcacttttgagttttttacacaaaccaaga 1146084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 41813890 - 41813843
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| |||||||||||||||||||| ||| ||||    
T  41813890 tttttaattgtcacttttgagttttttacacaaaccaaggcaaaaaat 41813843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 20294623 - 20294581
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaa 266  Q
    ||||||||||| |||||||||||||||||||||| ||||||||    
T  20294623 tttttaattgttacttttaagttttttacacaaatcaagacaa 20294581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 53855616 - 53855564
Alignment:
Q  219 attcttttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||| ||||||||| |||||||| |||||||| |||||| |||||||||||||    
T  53855616 attcctttttaattatcacttttgagttttttccacaaatcaagacaacaaat 53855564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 43086648 - 43086615
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaa 257  Q
    |||||||||||||||||| |||||||||||||||    
T  43086648 tttttaattgtcacttttgagttttttacacaaa 43086615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 2642944 - 2642897
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  2642944 tttttaattgtcacttttgagttttttacacaaaccaagacaacaaat 2642897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 53055731 - 53055685
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaa 270  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  53055731 tttttaattgtcacttttaagttttttacaaaaatcaagacaacaaa 53055685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 23771529 - 23771485
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaaca 268  Q
    |||||||||||||||||| |||||||||| |||||||||||||||    
T  23771529 tttttaattgtcacttttgagttttttacgcaaaccaagacaaca 23771485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 29748734 - 29748771
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaa 261  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  29748734 ttttcaattgtcacttttgagttttttacacaaaccaa 29748771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 48981365 - 48981425
Alignment:
Q  209 tacttcctatattcttttttaattgtcacttttaagttttttacacaaaccaagacaacaa 269  Q
    |||||||| | ||| |||||||||||||||||| ||||||| |||||||||||||||||||    
T  48981365 tacttcctctgttcctttttaattgtcacttttgagtttttgacacaaaccaagacaacaa 48981425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 8965901 - 8965948
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||    
T  8965901 tttttaattgtcacttttgagttttttacgcaaaccaagacaacaaat 8965948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 35684388 - 35684341
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| | |||||||||||| ||||||||||||||    
T  35684388 tttttaattgtcacttttgaattttttacacaatccaagacaacaaat 35684341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 46563124 - 46563171
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||    
T  46563124 tttttaattgtcacttttatgttttttacacaatacaagacaacaaat 46563171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 3178172 - 3178127
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaa 269  Q
    |||||||||||||||||||  ||||| |||||||||||||||||||    
T  3178172 tttttaattgtcacttttagatttttgacacaaaccaagacaacaa 3178127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 26803430 - 26803478
Alignment:
Q  224 tttttaattgtcacttttaagtttt-ttacacaaaccaagacaacaaat 271  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  26803430 tttttaattgtcacttttgggtttttttacacaaaccaagacaacaaat 26803478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 38168789 - 38168831
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaa 266  Q
    |||||||||||||||||| | | ||||||||||||||||||||    
T  38168789 tttttaattgtcactttttaatattttacacaaaccaagacaa 38168831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 96060 - 96107
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||    
T  96060 tttttaattgtcacttttgagatttttacacaaaccaagacaacaaat 96107  T

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Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 252836 - 252789
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  252836 tttttaattgtcacttttgagttttttacacaaaccaagacaagaaat 252789  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 8954697 - 8954744
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||    
T  8954697 tttttaattgtcacttttgagttttttacacaaactaagacaacaaat 8954744  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 11163508 - 11163461
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||    
T  11163508 tttttaattgtcacttttgagatttttacacaaaccaagacaacaaat 11163461  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 9301541 - 9301580
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaaga 263  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  9301541 tttttaattgtcacttttgagttttttacacaaaccaaga 9301580  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 38074521 - 38074471
Alignment:
Q  220 ttcttttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||||||    
T  38074521 ttcttttttaattgtcacttt-aagttttttatacaaatcaagacaacaaat 38074471  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 11727840 - 11727777
Alignment:
Q  208 gtacttcctatattcttttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    ||||||||| | ||| |||||||||||| | ||| |  ||||||||||||||||||||||||||    
T  11727840 gtacttcctctgttcctttttaattgtcgcattttaactttttacacaaaccaagacaacaaat 11727777  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 19812198 - 19812151
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||    
T  19812198 tttttaattgtcacttttgagttttttacacaaaccaaaacaacaaat 19812151  T

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Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 23379 - 23331
Alignment:
Q  224 tttttaattgtcacttttaagtttttt-acacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||||||    
T  23379 tttttaattgtcacttttgagtttttttacacaaactaagacaacaaat 23331  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 11249028 - 11248976
Alignment:
Q  219 attcttttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||| |||||||| ||||||||| | |||||||||||||| ||||||||||||    
T  11249028 attcctttttaatcgtcacttttgatttttttacacaaactaagacaacaaat 11248976  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 50152675 - 50152628
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| ||||||||| ||||| ||||||| |||||    
T  50152675 tttttaattgtcacttttgagttttttatacaaatcaagacagcaaat 50152628  T

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Target: scaffold0236 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 14249 - 14296
Alignment:
Q  224 tttttaattgtcacttttaagttttttacacaaaccaagacaacaaat 271  Q
    |||||||||||||||||| ||| ||||||| ||| |||||||||||||    
T  14249 tttttaattgtcacttttgagtcttttacagaaatcaagacaacaaat 14296  T

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