View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_high_13 (Length: 405)
Name: NF10163A_high_13
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_high_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Complemental strand, 44706341 - 44705947
Alignment:
| Q |
11 |
tgttgttgcaaaagcagctgaagatgtaaccacaatgaccatggagaaggttgaaatggccgaggttgataagaaagagatcatttacagtgaaaggaaa |
110 |
Q |
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| T |
44706341 |
tgttgttgcaaaagcagctgaagatgtaaccacaatgaccatggagaaggttgaaatggccgaggttgataagaaagagatcatttacagtgaaaggaag |
44706242 |
T |
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| Q |
111 |
gatgtagttgatgaattgtcacatatacactctgagaaaccttcagttggaagtacttctccaaaagagcctgttaaatcaagtgatgatagtaggtttg |
210 |
Q |
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| T |
44706241 |
gatgtagttgatgaattgtcacatatacactctgagaaaccttcagttggaaatacttctccaaaagatcctgttaaatcaagtgatgatagtaggtttg |
44706142 |
T |
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| Q |
211 |
ggattatatgagacttgagttcattctcaaatctcaatccttaacattatgagtacagttgcattgatttagttttgcttagtaatatagtcagtcttca |
310 |
Q |
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| T |
44706141 |
ggattatatgagacttgagttcattctcaaatctcaatccttaacattatgagtacagttgcattgatttagttttgcttagttatatagtcagtcttca |
44706042 |
T |
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| Q |
311 |
ttcaaatctcaattttttgtgtgaggacgattcttgtttattgttatagtgatgtaatgtaaaagttgtctaacagttatgaaacatggatgaac |
405 |
Q |
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| T |
44706041 |
ttcaaatctcaattttttgtgtgaggacgattcttgtttattgttatagtgatgtaatgtaaaagttgtctaacagttatgaaacatggatgaac |
44705947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 11763243 - 11763144
Alignment:
| Q |
12 |
gttgttgcaaaagcagctgaagatgtaaccacaatgaccatggagaaggttgaaatggccgaggttgataagaaagagatcatttacagtgaaaggaaag |
111 |
Q |
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| T |
11763243 |
gttgttgccaaggcagctgaggatgtcagcacgatgaccatggagaaggttgaacaagctgaggtggaaaataaggagatcatttacagtgaaagaaaag |
11763144 |
T |
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