View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_high_24 (Length: 319)
Name: NF10163A_high_24
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF10163A_high_24 |
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[»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 5395566 - 5395263
Alignment:
Q |
16 |
atgtagaagtacaacgaacctcacttagagaatttctccaactcgacaccactctccgccaaaatgcacaacttaaagaagctatgaattcaacctactc |
115 |
Q |
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T |
5395566 |
atgtagaagtacaacgaacctcacttagagaatttctccaactcgacaccactctccgccaaaatgcacaacttaaagaagctatgaattcaacctactc |
5395467 |
T |
 |
Q |
116 |
acgtattcaaagccttgagaaagagcttagttgcatgaagaagtttcttcaggatcatcaagctgaggatgaaaaggagaaggagaaagaaaaagagaag |
215 |
Q |
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T |
5395466 |
gcgtattcaaagccttgagaaagagcttagttgcatgaagaagtttcttcaggatcatcaagctgaggatgaaaaggagaaggagaaagaaaaagagaag |
5395367 |
T |
 |
Q |
216 |
gaacaaagcaatagtgtcttgaattcagaacgttccgcaagttttcattttgttccggttgatgaaaacagtaaaatacaaagaggtggaagaggctcta |
315 |
Q |
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T |
5395366 |
gaacaaagcaatagtgtcttgaattcagaacgttccgcgagttttcattttgttccagttgatgaaaacagtaaaatacaaagaggtggaagaggctcta |
5395267 |
T |
 |
Q |
316 |
tttc |
319 |
Q |
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T |
5395266 |
tttc |
5395263 |
T |
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