View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10163A_high_24 (Length: 319)

Name: NF10163A_high_24
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10163A_high_24
NF10163A_high_24
[»] chr5 (1 HSPs)
chr5 (16-319)||(5395263-5395566)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 5395566 - 5395263
Alignment:
16 atgtagaagtacaacgaacctcacttagagaatttctccaactcgacaccactctccgccaaaatgcacaacttaaagaagctatgaattcaacctactc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5395566 atgtagaagtacaacgaacctcacttagagaatttctccaactcgacaccactctccgccaaaatgcacaacttaaagaagctatgaattcaacctactc 5395467  T
116 acgtattcaaagccttgagaaagagcttagttgcatgaagaagtttcttcaggatcatcaagctgaggatgaaaaggagaaggagaaagaaaaagagaag 215  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5395466 gcgtattcaaagccttgagaaagagcttagttgcatgaagaagtttcttcaggatcatcaagctgaggatgaaaaggagaaggagaaagaaaaagagaag 5395367  T
216 gaacaaagcaatagtgtcttgaattcagaacgttccgcaagttttcattttgttccggttgatgaaaacagtaaaatacaaagaggtggaagaggctcta 315  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
5395366 gaacaaagcaatagtgtcttgaattcagaacgttccgcgagttttcattttgttccagttgatgaaaacagtaaaatacaaagaggtggaagaggctcta 5395267  T
316 tttc 319  Q
    ||||    
5395266 tttc 5395263  T

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