View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_high_33 (Length: 236)
Name: NF10163A_high_33
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_high_33 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 5739480 - 5739708
Alignment:
| Q |
8 |
ttggagtttatgtggcttcttggcgtttttgtttccatctttgtgtnnnnnnnctagctttacttaactattcataattatttcttttttctaacaatgg |
107 |
Q |
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| T |
5739480 |
ttggactttatgtggcttcttggtgtttttgtttccatctttgtgtaaaaaaactagctttacttaactattcataattatttcttttttctaacaatgg |
5739579 |
T |
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| Q |
108 |
cagctgccagagaaactaccacactttccaaaatcaagaggcttcatcaacaaaaacaacaaatacagaggcttcctccttgatgaaaatggaggcagat |
207 |
Q |
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| T |
5739580 |
cagctgccagagaaactaccacactttccaaaatcaagaggcttcatcaacaaaaacaacaaatacagaggcttcctccttgatgaaaatggaggcagat |
5739679 |
T |
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| Q |
208 |
ttgtaaattgaatagccattctcggctga |
236 |
Q |
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| T |
5739680 |
ttgtaaattgaatagccattctcggctga |
5739708 |
T |
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